Receptor
PDB id Resolution Class Description Source Keywords
4WKM 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMPR EFFECTOR BINDING DOMAIN FROM CITROBACTER FREUNDII BOUND MURNAC-PENTAPEPTIDE CITROBACTER FREUNDII ATCC 8090 = MTCC ORGANISM_TAXID: 1006003 LYSR-TYPE TRANSCRIPTIONAL REGULATOR LTTR UDP-MURNAC-PENTAPTRANSCRIPTION
Ref.: THE BETA-LACTAMASE GENE REGULATOR AMPR IS A TETRAME RECOGNIZES AND BINDS THE D-ALA-D-ALA MOTIF OF ITS R UDP-N-ACETYLMURAMIC ACID (MURNAC)-PENTAPEPTIDE. J.BIOL.CHEM. V. 290 2630 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:401;
D:401;
E:401;
G:401;
H:401;
F:401;
C:401;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
 submit data
92.094 C3 H8 O3 C(C(C...
ALA FGA API DAL DAL MUB O:1;
P:1;
M:1;
I:1;
J:1;
K:1;
L:1;
N:1;
 Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
none;
none;
none;
none;
 submit data
805.792 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4WKM 2.15 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMPR EFFECTOR BINDING DOMAIN FROM CITROBACTER FREUNDII BOUND MURNAC-PENTAPEPTIDE CITROBACTER FREUNDII ATCC 8090 = MTCC ORGANISM_TAXID: 1006003 LYSR-TYPE TRANSCRIPTIONAL REGULATOR LTTR UDP-MURNAC-PENTAPTRANSCRIPTION
Ref.: THE BETA-LACTAMASE GENE REGULATOR AMPR IS A TETRAME RECOGNIZES AND BINDS THE D-ALA-D-ALA MOTIF OF ITS R UDP-N-ACETYLMURAMIC ACID (MURNAC)-PENTAPEPTIDE. J.BIOL.CHEM. V. 290 2630 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 308 families.
1 4WKM - ALA FGA API DAL DAL MUB n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 266 families.
1 4WKM - ALA FGA API DAL DAL MUB n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 220 families.
1 4WKM - ALA FGA API DAL DAL MUB n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ALA FGA API DAL DAL MUB; Similar ligands found: 17
No: Ligand ECFP6 Tc MDL keys Tc
1 ALA FGA API DAL DAL MUB 1 1
2 AMV ALA FGA LYS DAL DAL 0.675214 0.947368
3 DGN ALA NDG LAC 0.653846 0.962963
4 AMU ALA GMA LYS DAL DAL NH2 0.647059 0.964286
5 MUB ALA ZGL ALY DAL NH2 0.614754 0.931035
6 AMU ALA GMA LYS NH2 0.588235 0.964286
7 ALA FGA LYS DAL DAL AMV NAG 0.575758 0.9
8 3LT 0.559633 0.944444
9 AH0 ALA FGA LYS 0.516129 0.885246
10 NAG AH0 ALA DGL API DAL DAL 0.503401 0.857143
11 UAG API 0.496815 0.710526
12 AMU ALA NAG DGL 0.488 0.894737
13 MUB ALA NAG DGN 0.480315 0.912281
14 MUB ALA NAG GLN 0.446154 0.894737
15 MUB ALA NAG ZGL 0.427481 0.912281
16 MLD 0.426667 0.868852
17 AMU 0.407767 0.796296
Similar Ligands (3D)
Ligand no: 1; Ligand: ALA FGA API DAL DAL MUB; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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