Receptor
PDB id Resolution Class Description Source Keywords
5B2D 2.18 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE 3-SIALYLLACTOSE MUMPS VIRUS GLYCOPROTEIN VIRAL PROTEIN BETA-PROPELLER RECEPTOR BINDIN
Ref.: TRISACCHARIDE CONTAINING ALPHA 2,3-LINKED SIALIC AC RECEPTOR FOR MUMPS VIRUS PROC.NATL.ACAD.SCI.USA V. 113 11579 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG A:605;
B:603;
B:601;
A:604;
B:604;
A:601;
B:605;
A:602;
B:602;
A:603;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
221.208 C8 H15 N O6 CC(=O...
SO4 B:607;
 Invalid;
 none;
 submit data
96.063 O4 S [O-]S...
GLC GAL SIA C:1;
D:1;
 Valid;
Valid;
 none;
none;
 Kd = 56 uM
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5B2D 2.18 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE 3-SIALYLLACTOSE MUMPS VIRUS GLYCOPROTEIN VIRAL PROTEIN BETA-PROPELLER RECEPTOR BINDIN
Ref.: TRISACCHARIDE CONTAINING ALPHA 2,3-LINKED SIALIC AC RECEPTOR FOR MUMPS VIRUS PROC.NATL.ACAD.SCI.USA V. 113 11579 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6JJM - BGC GAL SIA NAG n/a n/a
2 5B2D Kd = 56 uM GLC GAL SIA n/a n/a
3 6JJN - GAL NAG FUC GAL SIA n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6JJM - BGC GAL SIA NAG n/a n/a
2 5B2D Kd = 56 uM GLC GAL SIA n/a n/a
3 6JJN - GAL NAG FUC GAL SIA n/a n/a
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 18 families.
1 1Z4V - DAN C11 H17 N O8 CC(=O)N[C@....
2 1Z4X - GLC GAL SIA n/a n/a
3 1Z4Z - DAN C11 H17 N O8 CC(=O)N[C@....
4 6JJM - BGC GAL SIA NAG n/a n/a
5 5B2D Kd = 56 uM GLC GAL SIA n/a n/a
6 6JJN - GAL NAG FUC GAL SIA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GLC GAL SIA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: GLC GAL SIA; Similar ligands found: 9
No: Ligand Similarity coefficient
1 GLC GAL SIA 1.0000
2 BGC GAL SIA 0.9887
3 NAG GAL SIA 0.9303
4 NAG 2FG SIA 0.9284
5 GLC GAL NGC 0.9282
6 GAL BGC SIA 0.9156
7 NGA GAL SIA 0.8915
8 NAG GAL NGC 0.8628
9 A2G GAL SIA 0.8614
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5B2D; Ligand: GLC GAL SIA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5b2d.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5B2D; Ligand: GLC GAL SIA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5b2d.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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