-->
Receptor
PDB id Resolution Class Description Source Keywords
1BDB 2 Å EC: 1.-.-.- CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMO LB400 PSEUDOMONAS SP. NAD-DEPENDENT OXIDOREDUCTASE SHORT-CHAIN ALCOHOL DEHYDROGENDEGRADATION OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM DEGRADER AT 2.0 A RESOLUTION. PROTEIN SCI. V. 7 1286 1998
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAD A:300;
Valid;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1BDB 2 Å EC: 1.-.-.- CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMO LB400 PSEUDOMONAS SP. NAD-DEPENDENT OXIDOREDUCTASE SHORT-CHAIN ALCOHOL DEHYDROGENDEGRADATION OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM DEGRADER AT 2.0 A RESOLUTION. PROTEIN SCI. V. 7 1286 1998
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 318 families.
1 1BDB - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3ZV6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2Y99 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 3ZV5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 1BDB - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3ZV6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2Y99 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 3ZV5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 1BDB - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAD; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NHD 0.821429 0.972222
3 NAP 0.811966 0.986111
4 NFD 0.791304 0.946667
5 NXX 0.765766 0.972603
6 DND 0.765766 0.972603
7 AMP NAD 0.74359 0.972222
8 ZID 0.737705 0.986111
9 NAQ 0.729508 0.934211
10 NAE 0.721311 0.959459
11 NA0 0.712 0.972603
12 TAP 0.704 0.921053
13 NDE 0.689922 0.972603
14 NAJ 0.683333 0.972222
15 NDC 0.679389 0.934211
16 NDO 0.674603 0.958904
17 N01 0.656 0.972222
18 CNA 0.642276 0.972603
19 NBP 0.621212 0.922078
20 8ID 0.609756 0.922078
21 A2D 0.576923 0.958333
22 ADP 0.575472 0.931507
23 NGD 0.574803 0.922078
24 BA3 0.566038 0.958333
25 M33 0.564815 0.918919
26 ADP PO3 0.563636 0.957747
27 B4P 0.560748 0.958333
28 AP5 0.560748 0.958333
29 AN2 0.555556 0.918919
30 AT4 0.555556 0.894737
31 GAP 0.553571 0.932432
32 OOB 0.551724 0.972222
33 CA0 0.550459 0.932432
34 9JJ 0.546053 0.898734
35 HEJ 0.545455 0.931507
36 ACP 0.545455 0.906667
37 ATP 0.545455 0.931507
38 DQV 0.544 0.972222
39 ADP ALF 0.54386 0.883117
40 ALF ADP 0.54386 0.883117
41 DAL AMP 0.543103 0.945205
42 APR 0.540541 0.931507
43 AQP 0.540541 0.931507
44 AR6 0.540541 0.931507
45 5FA 0.540541 0.931507
46 ADP VO4 0.53913 0.945205
47 VO4 ADP 0.53913 0.945205
48 AD9 0.535714 0.906667
49 SAP 0.535714 0.883117
50 AGS 0.535714 0.883117
51 WAQ 0.533333 0.896104
52 ABM 0.53271 0.905405
53 DLL 0.529412 0.972222
54 00A 0.529412 0.921053
55 ACQ 0.526316 0.906667
56 NJP 0.526316 0.959459
57 ANP 0.526316 0.906667
58 OAD 0.525 0.932432
59 ADX 0.522523 0.839506
60 5AL 0.521739 0.945205
61 A1R 0.521008 0.871795
62 9SN 0.520325 0.909091
63 A 0.518868 0.930556
64 AMP 0.518868 0.930556
65 50T 0.517857 0.893333
66 ATF 0.517241 0.894737
67 1ZZ 0.516393 0.851852
68 3OD 0.516393 0.932432
69 SON 0.513514 0.92
70 PRX 0.513274 0.881579
71 6YZ 0.512821 0.906667
72 SRP 0.512821 0.92
73 9X8 0.512397 0.883117
74 ADP BMA 0.512397 0.932432
75 3UK 0.512397 0.958904
76 MYR AMP 0.512195 0.851852
77 NAJ PZO 0.510949 0.909091
78 NMN 0.509434 0.875
79 A3R 0.508333 0.871795
80 B5V 0.508197 0.945946
81 AMP DBH 0.507937 0.906667
82 A22 0.504202 0.945205
83 ATP A A A 0.504 0.971831
84 B5M 0.504 0.933333
85 FA5 0.504 0.945946
86 8QN 0.5 0.945205
87 NAX 0.496183 0.886076
88 TYR AMP 0.496063 0.933333
89 PR8 0.495935 0.8625
90 AMO 0.495868 0.92
91 ADQ 0.495868 0.932432
92 4AD 0.495868 0.933333
93 PAJ 0.495868 0.873418
94 A12 0.495495 0.894737
95 AP2 0.495495 0.894737
96 AHZ 0.492308 0.851852
97 YAP 0.492063 0.933333
98 FYA 0.491935 0.918919
99 AHX 0.491803 0.884615
100 4UU 0.488372 0.933333
101 5SV 0.487603 0.8375
102 TAT 0.487179 0.894737
103 T99 0.487179 0.894737
104 APC 0.486957 0.894737
105 SRA 0.486239 0.881579
106 6V0 0.484848 0.909091
107 NAI 0.484848 0.921053
108 GTA 0.484615 0.898734
109 A A 0.483871 0.958333
110 LAD 0.483871 0.873418
111 AU1 0.482456 0.906667
112 F2R 0.481752 0.831325
113 OMR 0.481203 0.841463
114 TXE 0.481203 0.921053
115 AF3 ADP 3PG 0.481203 0.873418
116 LAQ 0.480916 0.851852
117 G3A 0.48062 0.909091
118 B5Y 0.480315 0.933333
119 NB8 0.48 0.884615
120 TXA 0.48 0.92
121 BIS 0.48 0.871795
122 ME8 0.48 0.851852
123 PTJ 0.48 0.884615
124 139 0.477941 0.886076
125 LPA AMP 0.477273 0.851852
126 AFH 0.476923 0.873418
127 AR6 AR6 0.476923 0.958333
128 G5P 0.476923 0.909091
129 ARG AMP 0.476923 0.841463
130 25L 0.47619 0.945205
131 NAJ PYZ 0.475524 0.864198
132 25A 0.47541 0.958333
133 9ZA 0.47541 0.896104
134 9ZD 0.47541 0.896104
135 DZD 0.47482 0.897436
136 TXD 0.473684 0.921053
137 4UV 0.472868 0.933333
138 TYM 0.470149 0.945946
139 RBY 0.470085 0.894737
140 ADV 0.470085 0.894737
141 4TA 0.467626 0.864198
142 48N 0.466165 0.884615
143 XAH 0.465116 0.851852
144 4UW 0.462687 0.897436
145 M24 0.461538 0.886076
146 80F 0.460993 0.853659
147 IOT 0.459854 0.821429
148 T5A 0.456522 0.853659
149 EAD 0.455782 0.886076
150 MAP 0.455285 0.883117
151 GA7 0.454545 0.894737
152 BT5 0.453901 0.821429
153 A4P 0.452555 0.833333
154 UP5 0.451852 0.933333
155 PAP 0.445378 0.917808
156 4TC 0.445255 0.909091
157 AP0 0.445255 0.884615
158 YLP 0.444444 0.831325
159 P1H 0.443709 0.864198
160 AOC 0.442478 0.810811
161 Z5A 0.439189 0.833333
162 LMS 0.4375 0.817073
163 2A5 0.436975 0.857143
164 A G 0.43662 0.921053
165 G A A A 0.43662 0.909091
166 COD 0.43662 0.802326
167 ADJ 0.435714 0.841463
168 YLB 0.434783 0.831325
169 YLC 0.434783 0.851852
170 U A G G 0.433566 0.921053
171 ATR 0.433333 0.90411
172 7MD 0.432836 0.851852
173 8X1 0.432 0.764045
174 G5A 0.429752 0.790698
175 PO4 PO4 A A A A PO4 0.429688 0.943662
176 TAD 0.42963 0.873418
177 5AS 0.42735 0.770115
178 BTX 0.426573 0.831325
179 YLA 0.425532 0.831325
180 DSZ 0.425197 0.790698
181 NCN 0.424779 0.805556
182 UPA 0.42446 0.921053
183 8PZ 0.424242 0.811765
184 VMS 0.424 0.8
185 54H 0.424 0.8
186 9K8 0.423077 0.744444
187 N0B 0.422819 0.853659
188 6AD 0.422764 0.85
189 AYB 0.422535 0.821429
190 7D3 0.422414 0.844156
191 YLY 0.421769 0.821429
192 TSB 0.420635 0.809524
193 ODP 0.41958 0.922078
194 AV2 0.419355 0.855263
195 FB0 0.419355 0.775281
196 A5A 0.419355 0.819277
197 NNR 0.419048 0.739726
198 A A A 0.418605 0.918919
199 U A 0.417808 0.946667
200 649 0.417266 0.775281
201 NMN AMP PO4 0.416667 0.933333
202 SSA 0.416 0.790698
203 P5A 0.415385 0.755556
204 LSS 0.414062 0.772727
205 A2R 0.412698 0.918919
206 52H 0.412698 0.790698
207 JB6 0.412214 0.896104
208 5N5 0.411215 0.783784
209 YSA 0.410448 0.811765
210 53H 0.409449 0.790698
211 5CA 0.409449 0.790698
212 ITT 0.408333 0.878378
213 7D4 0.408333 0.844156
214 NA7 0.407692 0.894737
215 LEU LMS 0.407692 0.784091
216 5CD 0.407407 0.794521
217 0WD 0.406897 0.909091
218 A3P 0.40678 0.930556
219 HFD 0.406504 0.883117
220 AVV 0.40625 0.860759
221 RAB 0.40566 0.808219
222 XYA 0.40566 0.808219
223 ADN 0.40566 0.808219
224 FDA 0.405063 0.823529
225 GSU 0.40458 0.790698
226 7MC 0.404255 0.831325
227 NSS 0.403101 0.811765
228 6FA 0.402516 0.853659
229 PPS 0.4 0.817073
230 NVA LMS 0.4 0.784091
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1BDB; Ligand: NAD; Similar sites found with APoc: 820
This union binding pocket(no: 1) in the query (biounit: 1bdb.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC None
2 2BOS GLA GAL None
3 1Z0N BCD None
4 1PNO NAP 1.11111
5 5BW4 SAM 1.49813
6 1V35 NAI 1.80505
7 1EQ2 NAP 1.80505
8 1WVG APR 1.80505
9 1PJS NAD 1.80505
10 4ZVV NAD 1.80505
11 4ZVV GN0 1.80505
12 1LDN NAD 1.80505
13 4KRI SAH 1.80505
14 1VJT NAD 1.80505
15 1RJD SAM 1.80505
16 2EFJ SAH 1.80505
17 5UAV TFB 1.80505
18 4YCA NDP 1.80505
19 5UAV NDP 1.80505
20 1C0I FAD 1.80505
21 1C0I BE2 1.80505
22 4N49 SAM 1.80505
23 1HYH NAD 1.80505
24 1NAA ABL 1.80505
25 1NAA 6FA 1.80505
26 2WA2 SAM 1.81159
27 1C3V NDP 2.04082
28 2OOR NAD 2.16606
29 5E9W SAH 2.16606
30 3ABI NAD 2.16606
31 1LDM NAD 2.16606
32 6FDF SAH 2.16606
33 2C29 NAP 2.16606
34 1X87 NAD 2.16606
35 5JGL SAM 2.16606
36 2C29 DQH 2.16606
37 1F8G NAD 2.16606
38 2G5C NAD 2.16606
39 5THY SAH 2.16606
40 5FUB SAH 2.16606
41 4M37 SAH 2.16606
42 4D52 GXL 2.16606
43 4UP3 NDP 2.16606
44 5Z20 NAI 2.16606
45 1TJY PAV 2.16606
46 5JY6 NAD 2.16606
47 4A91 GLU 2.16606
48 5THZ SAH 2.16606
49 2OOR TXP 2.16606
50 5BVA FAD 2.16606
51 4RPL 3UC 2.16606
52 4RPL FAD 2.16606
53 5N6C NAD 2.16606
54 3D91 REM 2.16606
55 1SC6 NAD 2.16606
56 5ME4 HP4 2.18978
57 5N5D SAM 2.21239
58 3K56 IS3 2.25564
59 2FPU HSO 2.27273
60 3DXY SAM 2.29358
61 2WG9 OCA 2.30769
62 4MUS LY0 2.36967
63 4MUS 2D8 2.36967
64 2BKA NDP 2.47934
65 5FA8 SAM 2.48447
66 3GDH SAH 2.48963
67 3A4V NAD 2.52708
68 3A4V PYR 2.52708
69 1RKX NAD 2.52708
70 3GU3 SAH 2.52708
71 4KRG SAH 2.52708
72 1FP2 SAH 2.52708
73 2F1K NAP 2.52708
74 5XNC MTA 2.52708
75 4DMG SAM 2.52708
76 4AZW SAM 2.52708
77 4LWP SAH 2.52708
78 1ZQ9 SAM 2.52708
79 2JLD ALA GLY GLY ALA ALA ALA ALA ALA 2.52708
80 1UXG NAD 2.52708
81 1UXG FUM 2.52708
82 1RM0 D6P 2.52708
83 3OJO NAD 2.52708
84 1RM0 NAI 2.52708
85 1SOW NAD 2.52708
86 3BAZ NAP 2.52708
87 3I53 SAH 2.52708
88 5X9D 80F 2.52708
89 1GAD NAD 2.52708
90 1J49 NAD 2.52708
91 2DPM SAM 2.52708
92 3DMH SAM 2.52708
93 2JHF NAD 2.52708
94 2VUT NAD 2.52708
95 1KOL NAD 2.52708
96 2B4R NAD 2.52708
97 2Y6Q FAD 2.52708
98 2Y6Q I7T 2.52708
99 2B4R AES 2.52708
100 2F2U M77 2.52708
101 1TI7 NAP 2.52708
102 1GTE FAD 2.52708
103 5UR0 NAD 2.52708
104 4I5I NAD 2.52708
105 5KVA SAM 2.52708
106 3TY3 GGG 2.52708
107 5J5Z FAD 2.52708
108 4L9I 8PR 2.52708
109 5T9F TYR 2.58303
110 5T9F NAP 2.58303
111 5T9E NAP 2.58303
112 1NYT NAP 2.58303
113 1I36 NAP 2.65152
114 1W8S FBP 2.6616
115 3P2E SAH 2.66667
116 3TLJ SAH 2.68097
117 3DUW SAH 2.69058
118 3BGD SAH 2.69231
119 3BGD PM6 2.69231
120 3OFK SAH 2.77778
121 1NVT NAP 2.78746
122 2VT3 ATP 2.7907
123 2UYQ SAM 2.88809
124 5DF1 NAP 2.88809
125 5DF1 58X 2.88809
126 2Q28 ADP 2.88809
127 3B20 NAD 2.88809
128 3VYW SAM 2.88809
129 3I6I NDP 2.88809
130 1LTH NAD 2.88809
131 2YX1 SFG 2.88809
132 5DN9 NAD 2.88809
133 2D2I NAP 2.88809
134 6BII NAP 2.88809
135 2AOT SAH 2.88809
136 6C8R SAH 2.88809
137 1RM4 NDP 2.88809
138 5OKU 0L1 2.88809
139 1GV0 NAD 2.88809
140 5EEH SAH 2.88809
141 3TKA SAM 2.88809
142 5A04 BGC 2.88809
143 1NJR XYL 2.88809
144 1J0X NAD 2.88809
145 2X1L ADN 2.88809
146 3FXU TSU 2.88809
147 5A04 NDP 2.88809
148 1OMO NAD 2.88809
149 5HSA FAS 2.88809
150 4YUW 4JU 2.88809
151 4YUW S4M 2.88809
152 1WY7 SAH 2.89855
153 3EGI ADP 2.91262
154 3RIY NAD 2.9304
155 2DC1 NAD 2.9661
156 2ZL4 ALA ALA ALA ALA 3.06122
157 3WV8 ATP 3.21101
158 1M2K APR 3.21285
159 5EES NAP 3.23887
160 1GY8 NAD 3.2491
161 4Q9N NAI 3.2491
162 1N7G GDR 3.2491
163 4U7W NDP 3.2491
164 5MSO NAP 3.2491
165 1N7G NDP 3.2491
166 5JAQ NAI 3.2491
167 5DNK SAH 3.2491
168 4PIV NDP 3.2491
169 2X6T NAP 3.2491
170 4RDH AMP 3.2491
171 5W7M SAH 3.2491
172 3QOX SAH 3.2491
173 2GZ3 NAP 3.2491
174 4GKV NAD 3.2491
175 5KKA 6V0 3.2491
176 6ECT SAM 3.2491
177 4RDI ATP 3.2491
178 4D3F NAP 3.2491
179 4UCI SAM 3.2491
180 1GUZ NAD 3.2491
181 5GM1 SAH 3.2491
182 5YF1 SFG 3.2491
183 5KVS NAP 3.2491
184 1P0F NAP 3.2491
185 2WPB ZZI 3.2491
186 4XQC NAD 3.2491
187 3ULK NDP 3.2491
188 2WKW W22 3.2491
189 3B1F NAD 3.2491
190 1E3I CXF 3.2491
191 4XQC 13D 3.2491
192 1RP0 AHZ 3.2491
193 1NW5 SAM 3.2491
194 5MZI FYK 3.2491
195 5MZI FAD 3.2491
196 5YF1 8V0 3.2491
197 5Y77 FAD 3.2491
198 1GET NAP 3.2491
199 5MW4 5JU 3.2491
200 4J36 1HR 3.2491
201 1GET FAD 3.2491
202 4J36 FAD 3.2491
203 3GCZ SAM 3.2491
204 4D79 ATP 3.26087
205 5HWK BEZ 3.33333
206 1DJL NAP 3.38164
207 5OOH 9ZZ 3.39806
208 5OOH NAP 3.39806
209 3H5N ATP 3.39943
210 4NEC SAH 3.40909
211 3CBG SAH 3.44828
212 4XZ3 COA 3.44828
213 1G60 SAM 3.46154
214 5FTW SAH 3.51562
215 4EUE NAI 3.61011
216 6EL3 NAP 3.61011
217 5W7K SAH 3.61011
218 5X62 SAH 3.61011
219 5MDH NAD 3.61011
220 5HJM MTA 3.61011
221 3VPH NAD 3.61011
222 2GSD NAD 3.61011
223 2ZJ1 ARJ 3.61011
224 2ZJ1 NAD 3.61011
225 4MDH NAD 3.61011
226 3NJ4 NAD 3.61011
227 2ZIF SAM 3.61011
228 3NJ4 AFX 3.61011
229 1F8F NAD 3.61011
230 5DWQ SFG 3.61011
231 5DX0 SFG 3.61011
232 5AOV NAP 3.61011
233 3N75 G4P 3.61011
234 5Y8L NAD 3.61011
235 5Y8L HUI 3.61011
236 1D1T NAD 3.61011
237 1ZK7 FAD 3.61011
238 3VPH OXM 3.61011
239 1X7D NAD 3.61011
240 1OBB NAD 3.61011
241 1R37 NAD 3.61011
242 5Z21 NAI 3.61011
243 1PL6 NAD 3.61011
244 4C4A SAH 3.61011
245 1ZH8 NAP 3.61011
246 1PL6 572 3.61011
247 2E5V FAD 3.61011
248 3LKZ SFG 3.61011
249 4MO2 FDA 3.61011
250 5YJF 8WO 3.61011
251 5WHT SIA GAL GLC 3.62319
252 4HXY NDP 3.65297
253 1D4O NAP 3.80435
254 3I6B KDO 3.88889
255 3MB5 SAM 3.92157
256 1J5P NAD 3.95257
257 1UKG MMA 3.96825
258 2PHU MAN MAN 3.96825
259 2PHT MAN MAN MAN 3.96825
260 2GND MAN 3.96825
261 2PHX MAN MAN 3.96825
262 1Q8V MAN MAN 3.96825
263 9LDT NAD 3.97112
264 3K6V CIT 3.97112
265 1YS4 NAP 3.97112
266 5A1S FLC 3.97112
267 1KYZ SAH 3.97112
268 1MUU NAD 3.97112
269 9LDB NAD 3.97112
270 2JBM SRT 3.97112
271 1MV8 NAD 3.97112
272 2NAD NAD 3.97112
273 3OND NAD 3.97112
274 3OND ADN 3.97112
275 6ECU SAH 3.97112
276 3U31 NAD 3.97112
277 5E72 SAM 3.97112
278 2CVQ NDP 3.97112
279 5NUE NAD 3.97112
280 1W7F ICT 3.97112
281 5NUF NAD 3.97112
282 5EO8 TFU 3.97112
283 3LAD FAD 3.97112
284 5N0J FAD 3.97112
285 6ECW SAH 3.97112
286 4XDY NAI 3.97112
287 5VKT NAP 3.97112
288 1I1N SAH 3.9823
289 3A27 SAM 4.04412
290 1QAN SAH 4.09836
291 3MQ2 SAH 4.12844
292 5XQW 8EU 4.14747
293 5OF1 SAL 4.28571
294 1FP1 SAH 4.33213
295 3GFB NAD 4.33213
296 3TKY SAH 4.33213
297 1WDK NAD 4.33213
298 6GKV SAH 4.33213
299 1E5Q NDP 4.33213
300 5AYV NAP 4.33213
301 2PV7 NAD 4.33213
302 1LUA NAP 4.33213
303 1GPM AMP 4.33213
304 1GPM CIT 4.33213
305 1GR0 NAD 4.33213
306 1DLJ UGA 4.33213
307 1DLJ NAI 4.33213
308 3KB6 NAD 4.33213
309 1H6C SIN 4.33213
310 1H6C NDP 4.33213
311 1RYD NDP 4.33213
312 3GGO NAI 4.33213
313 3GGO ENO 4.33213
314 4AP3 NAP 4.33213
315 4AP3 FAD 4.33213
316 5X68 FAD 4.33213
317 1ONI BEZ 4.34783
318 4EKV BTN 4.40252
319 1KQR MNA 4.46927
320 2VDV SAM 4.47154
321 5ULP KB1 4.47761
322 2FR1 NDP 4.52675
323 1L3I SAH 4.6875
324 3WLE NAD 4.69208
325 1R6D DAU 4.69314
326 1R6D NAD 4.69314
327 5MLR GRQ 4.69314
328 5MLR NAP 4.69314
329 1RPN NDP 4.69314
330 2EG5 SAH 4.69314
331 5A1T NAI 4.69314
332 5A1T OXM 4.69314
333 1P31 EPU 4.69314
334 3PT9 SAH 4.69314
335 1HYE NAP 4.69314
336 3OA2 NAD 4.69314
337 2J5V RGP 4.69314
338 3C1O NAP 4.69314
339 1DSS NAD 4.69314
340 6D6Y SAH 4.69314
341 5KOK SAH 4.69314
342 1Z82 NDP 4.69314
343 5NA1 FAD 4.69314
344 5O9F 9ON 4.69314
345 5O9F NAD 4.69314
346 1CF2 NAP 4.69314
347 2A92 NAI 4.69314
348 1A5Z NAD 4.69314
349 2YYY NAP 4.69314
350 5TOW NAI 4.69314
351 5TOW ADN 4.69314
352 5M58 SAH 4.78261
353 1IM8 SAI 4.91803
354 2A14 SAH 4.94297
355 2P3I MNA 4.96894
356 5E1M SAH 4.97925
357 4YMH SAH 5
358 4JK3 NAD 5.01931
359 3BXO SAM 5.02092
360 5YEC ATP 5.04202
361 1N5D NDP 5.05415
362 1I2B NAD 5.05415
363 1I2B UPG 5.05415
364 1I2B USQ 5.05415
365 5IN4 6CK 5.05415
366 5IN4 GDP 5.05415
367 5IN4 NAP 5.05415
368 5F8F SFG 5.05415
369 4A6D SAM 5.05415
370 5CAE COA 5.05415
371 5ERG SAM 5.05415
372 4RQU NAD 5.05415
373 3CMC NAD 5.05415
374 1U3U NAD 5.05415
375 1U3U BNF 5.05415
376 6AA8 NAD 5.05415
377 4TXI FAD 5.05415
378 3LZW FAD 5.05415
379 6A0S NDP 5.12048
380 6A0S HSE 5.12048
381 5A7Y SAH 5.12821
382 3G89 SAM 5.22088
383 5K4W NAI 5.41516
384 5K4W THR 5.41516
385 3O7W SAM 5.41516
386 1G55 SAH 5.41516
387 5H81 NAP 5.41516
388 4LHD GLY 5.41516
389 1HDG NAD 5.41516
390 1DJN ADP 5.41516
391 2P41 SAH 5.41516
392 5M67 NAD 5.41516
393 1COY FAD 5.41516
394 5M67 3D1 5.41516
395 5M67 ADE 5.41516
396 4FXQ G9L 5.41516
397 4KBA 1QM 5.41516
398 1YQZ FAD 5.41516
399 1PS9 NAP 5.41516
400 3EVG SAH 5.45455
401 1KYQ NAD 5.47445
402 2YVJ NAI 5.50459
403 3FUU ADN 5.53506
404 1VM6 NAD 5.70175
405 4M1U A2G MBG 5.71429
406 1PZG A3D 5.74018
407 1EK6 NAI 5.77617
408 1EK6 UPG 5.77617
409 1UWK URO 5.77617
410 1UWK NAD 5.77617
411 3H8V ATP 5.77617
412 5JE8 NAD 5.77617
413 5X20 NAD 5.77617
414 2TOH HBI 5.77617
415 1A99 PUT 5.77617
416 3L9W AMP 5.77617
417 3L9W GSH 5.77617
418 4DPL NAP 5.77617
419 3TWO NDP 5.77617
420 6GAS FAD 5.77617
421 3EJW PAV 5.77617
422 1E1M FAD 5.77617
423 1E1M NAP 5.77617
424 4AT0 FAD 5.77617
425 2V57 PRL 5.78947
426 1P77 ATR 5.88235
427 2PT9 S4M 5.919
428 2PT9 2MH 5.919
429 2PEL LBT 5.9322
430 1XTT U5P 6.01852
431 1EJ0 SAM 6.11111
432 1KEW TYD 6.13718
433 1KEW NAD 6.13718
434 1V59 NAD 6.13718
435 4FZV SAM 6.13718
436 4KOA NDP 6.13718
437 2IXB NAD 6.13718
438 4L8V NAP 6.13718
439 2NU8 COA 6.13718
440 2I3G NAP 6.13718
441 4W6Z 8ID 6.13718
442 1V59 FAD 6.13718
443 1HKU NAD 6.13718
444 1U2Z SAH 6.13718
445 2IXB A2G 6.13718
446 4YSX FAD 6.13718
447 1ZGA SAH 6.16247
448 4J4H 1J1 6.17761
449 4J4H NAI 6.17761
450 3O5N BR0 6.25
451 2DBZ NAP 6.28743
452 2Q46 NAP 6.32411
453 3T7S SAM 6.34328
454 1CER NAD 6.34441
455 3HY2 ATP 6.36364
456 1L5Y BEF 6.45161
457 3V1Y NAD 6.4982
458 1Y8Q ATP 6.4982
459 2ZWA SAH 6.4982
460 2JHP SAH 6.4982
461 1LVL NAD 6.4982
462 2VHW NAI 6.4982
463 1H9A NAP 6.4982
464 1H2B NAJ 6.4982
465 1WQ1 AF3 6.4982
466 1I9G SAM 6.4982
467 3SQP FAD 6.4982
468 5OC1 FAD 6.4982
469 1O6Z NAD 6.60066
470 1OYF MHN 6.61157
471 1VBO MAN MAN MAN 6.71141
472 6A4R ASP 6.79245
473 5Y1G AKB 6.85921
474 5Y1G NAD 6.85921
475 4ZRN UPG 6.85921
476 4ZRN NAD 6.85921
477 2Q1W NAD 6.85921
478 4KIB SAH 6.85921
479 1EZ4 NAD 6.85921
480 5MPT SAH 6.85921
481 5ZI2 NAD 6.85921
482 5ZI2 ADP 6.85921
483 3SSO SAH 6.85921
484 5LD5 NAD 6.85921
485 4M73 M72 6.85921
486 4M73 SAH 6.85921
487 1NPD NAD 6.85921
488 2XYQ SAH 6.85921
489 4RSL FAD 6.85921
490 1GPJ CIT 6.85921
491 1V8B NAD 6.85921
492 3ITJ CIT 6.85921
493 1GQ2 NAP 6.85921
494 1VI2 NAD 6.85921
495 1V8B ADN 6.85921
496 5D4V SAH 7.08955
497 3RFV NAI 7.11611
498 3RFV 15L 7.11611
499 1LSS NAD 7.14286
500 5K7U SAM 7.16332
501 5BSZ SAH 7.2
502 1SAY PYR 7.20222
503 3KO8 NAD 7.22022
504 1BXK NAD 7.22022
505 1SQF SAM 7.22022
506 1BW9 NAD 7.22022
507 1BXG NAD 7.22022
508 4ONQ SFG 7.22022
509 4DCM SAM 7.22022
510 4PNE SAH 7.22022
511 1C1X NAD 7.22022
512 1EBF NAD 7.22022
513 5JJR SAH 7.22022
514 2VSU ACO 7.24638
515 2VSS ACO 7.24638
516 3JWH SAH 7.37327
517 2HNK SAH 7.53138
518 5IL1 SAM 7.54717
519 6BWL NAD 7.58123
520 1V6A TRE 7.58123
521 2IZ1 ATR 7.58123
522 5WP4 SAH 7.58123
523 2CVZ NDP 7.58123
524 3LST SAH 7.58123
525 6CEP NAD 7.58123
526 6CEP OXM 7.58123
527 3CIF NAD 7.58123
528 4Z0H NAD 7.58123
529 3CIF G3H 7.58123
530 2GLX NDP 7.58123
531 6HLY G9Z 7.58123
532 1JQ3 AAT 7.58123
533 4MOP 2H5 7.58123
534 3C3Y SAH 7.59494
535 2RI1 GLP 7.65957
536 2PWY SAH 7.75194
537 4IWN GEK 7.86026
538 3RET SAL 7.92079
539 1R18 SAH 7.92952
540 2PZM UDP 7.94224
541 2PZM NAD 7.94224
542 5MGZ SAH 7.94224
543 4II2 ATP 7.94224
544 3H9E NAD 7.94224
545 2CDU ADP 7.94224
546 1NVM NAD 7.94224
547 3HWW AKG 7.94224
548 3FPF MTA 7.94224
549 3FPF TNA 7.94224
550 2CDU FAD 7.94224
551 3A25 SAM 7.97342
552 4W9F 3JU 8.02469
553 4GLL NAD 8.30325
554 3GWZ SAH 8.30325
555 1U1I NAD 8.30325
556 3GXO SAH 8.30325
557 3MCT SAH 8.30325
558 2DFV NAD 8.30325
559 2FZW NAD 8.30325
560 3MAG SAH 8.30325
561 2PKA BEN 8.55263
562 1Y1P NMN AMP PO4 8.66426
563 1UP7 NAD 8.66426
564 1GPE FAD 8.66426
565 4BG4 ARG 8.66426
566 1WP4 NDP 8.66426
567 1I8T FAD 8.66426
568 2DT5 NAD 9.00474
569 5BJX NAD 9.02527
570 5BJX UDP 9.02527
571 1F3L SAH 9.02527
572 3A06 NDP 9.02527
573 4OOE FOM 9.02527
574 4OOE NDP 9.02527
575 3VSE SAH 9.02527
576 1GZ4 ATP 9.02527
577 5EIN NAP 9.02527
578 5E8J SAH 9.09091
579 1TE2 PGA 9.29204
580 4OBW SAM 9.33852
581 2C5A GDC 9.38628
582 2C5A NAD 9.38628
583 1E7S NAP 9.38628
584 3G2O SAM 9.38628
585 2EXX NAP 9.38628
586 1T26 NAI 9.38628
587 1T26 GBD 9.38628
588 1LLU NAD 9.38628
589 4BVA NDP 9.38628
590 2DKN NAI 9.41177
591 6DUB SAH 9.45946
592 3A4T SFG 9.48905
593 3L8G GMB 9.62567
594 2Q1S NAI 9.74729
595 2VYN NAD 9.74729
596 6BQ6 TER 9.74729
597 1OFU GDP 9.74729
598 4DO1 ANN 10.1083
599 1O0S NAI 10.1083
600 4PVD NDP 10.4693
601 5ZEC NAP 10.4693
602 2JJQ SAH 10.4693
603 2GCG NDP 10.4693
604 4MUQ LY0 10.5882
605 3LCC SAH 10.6383
606 5N2I NAP 10.7759
607 3VWX GSH 10.8108
608 1OC2 NAD 10.8303
609 1OC2 TDX 10.8303
610 1DL5 SAH 10.8303
611 3UCL NAP 10.8303
612 2HMT NAI 11.1111
613 1SB8 UD2 11.5523
614 1SB8 NAD 11.5523
615 4G5H UD7 11.5523
616 4G5H NAP 11.5523
617 3GRU AMP 11.5523
618 6C5B SAH 11.5523
619 3M6W SAM 11.5523
620 1E6E FAD 11.7188
621 3HP8 SUC 11.8182
622 1JAY NAP 11.9134
623 5ZW3 SAH 12
624 1VKO NAD 12.2744
625 1VE3 SAM 12.3348
626 1Z45 NAD 12.6354
627 3ZG6 APR 12.6354
628 4HZO COA 12.6354
629 4TQG NDP 12.9964
630 6DNT NAD 12.9964
631 4R5M NAP 12.9964
632 4R5M 4NO 12.9964
633 2XVM SAH 13.0653
634 1P1C SAH 13.0653
635 1MID LAP 13.1868
636 1NNU NAD 13.3333
637 1NNU TCT 13.3333
638 2YY7 NAD 13.3574
639 3EWP APR 13.5593
640 1JG3 ADN 13.617
641 4QTU SAM 13.7184
642 5XWV 8H6 13.9113
643 5XWV NDP 13.9113
644 5L4S 6KX 14.0794
645 5L4S NAP 14.0794
646 5L53 NAP 14.0794
647 3A3B FMN 14.2105
648 2BZG SAH 14.2241
649 4OX5 DAL 14.4385
650 3L4S NAD 14.4404
651 3L4S 3PG 14.4404
652 4YEE 4CQ 14.4444
653 1WMA AB3 14.8551
654 1WMA NDP 14.8551
655 1HDR NAD 15.1639
656 4YEF 4CQ 15.7303
657 5DXA SFG 15.7895
658 5DX1 SFG 15.7895
659 5DX8 SFG 15.7895
660 3O26 NDP 15.8845
661 3H2B SAH 16.2562
662 2HK9 ATR 16.3636
663 2HK9 NAP 16.3636
664 1O94 ADP 16.6667
665 3OJF IMJ 17.8988
666 3OJF NDP 17.8988
667 1CDO NAD 18.0505
668 2GN4 UD1 18.7726
669 2GN4 NDP 18.7726
670 5WP5 SAH 18.7726
671 2PD4 NAD 19.2727
672 2PD4 DCN 19.2727
673 4RHE FMN 19.6172
674 5LOG SAH 19.7425
675 3O9Z AKG 19.8556
676 3O9Z NAD 19.8556
677 4MDB RLT 20
678 3WXB NDP 20.5776
679 3LU1 NAD 20.9386
680 4D42 W0I 20.9386
681 4D42 NAP 20.9386
682 4J1Q NDP 22.3827
683 4GQB 0XU 22.7273
684 1UDB UFG 22.7437
685 1UDB NAD 22.7437
686 2PXX SAH 22.7907
687 3OIG NAD 22.9323
688 1ORR NAD 23.4657
689 5ZZ6 ADP 23.5577
690 5ZZ6 NAD 23.5577
691 4M38 SAH 23.8095
692 3B1J NAD 24
693 5FA5 MTA 25
694 2FKA BEF 25.5814
695 3QV1 NAD 25.6098
696 4OHU NAD 25.9928
697 4OHU 2TK 25.9928
698 2RHO GDP 25.9928
699 4K26 SFF 26.4493
700 4K26 NDP 26.4493
701 4KXQ APR 26.6667
702 2EV9 NAP 26.9962
703 2EV9 SKM 26.9962
704 1XSE NDP 27.7978
705 3CH6 NAP 29.2419
706 3CH6 311 29.2419
707 1D7O TCL 30.3249
708 1D7O NAD 30.3249
709 2WYV NAD 30.6513
710 6F5Z SAH 31.1475
711 1YXM ADE 31.4079
712 3RJ5 NAD 31.8898
713 1G0N PHH 32.13
714 1G0N NDP 32.13
715 4J7U YTZ 32.13
716 4J7U NAP 32.13
717 1Z6Z NAP 32.2695
718 3QWI CUE 32.5926
719 3QWI NAP 32.5926
720 1OAA OAA 32.8185
721 3HB5 NAP 33.574
722 1A27 NAP 33.574
723 2GDZ NAD 33.7079
724 1E3W NAD 33.7165
725 2Q2V NAD 33.7255
726 5L95 AMP 33.75
727 1E6W NAD 33.8462
728 1U7T TDT 34.0996
729 1U7T NAD 34.0996
730 4ZA2 NAD 34.3874
731 5EJ2 NAD 34.657
732 1W73 NAP 35.0181
733 1W8D NAP 35.0181
734 1GZ6 NAI 36.1011
735 4O1M NAD 36.1011
736 1W6U NAP 36.4621
737 2BD0 NAP 36.4754
738 3RKR NAP 36.6412
739 1ZBQ NAD 38.2671
740 3V1U NAD 38.9892
741 5CG1 NAD BBN 38.9892
742 3ORF NAD 39.0438
743 2RH4 EMO 39.3502
744 4FC7 NAP 39.3502
745 4FC7 COA 39.3502
746 3O03 NAP 40.0722
747 2B4Q NAP 40.942
748 1H5Q NAP 41.1321
749 3H4V DVP 41.1552
750 3H4V NAP 41.1552
751 1QG6 NAD 41.3793
752 1QG6 TCL 41.3793
753 5I7S E9P 41.5162
754 5I7S NAD 41.5162
755 4CM9 NAP 41.5162
756 3BMN NAP 41.5162
757 4CLR NAP 41.5162
758 4CMI NAP 41.5162
759 3JQ9 NAP 41.5162
760 4CM8 NAP 41.5162
761 4CM4 NAP 41.5162
762 3JQG NAP 41.5162
763 3BMO NAP 41.5162
764 3JQF NAP 41.5162
765 3BMQ NAP 41.5162
766 3JQA NAP 41.5162
767 3JQ7 NAP 41.5162
768 4CLO NAP 41.5162
769 4CME NAP 41.5162
770 3JQB NAP 41.5162
771 3JQ8 NAP 41.5162
772 5O42 BGC 41.6058
773 5O42 9JW 41.6058
774 5O42 NAD 41.6058
775 3VZS CAA 41.6342
776 1FK8 NAD 41.6342
777 3VZS NAP 41.6342
778 5OVL NAP 42.5993
779 2VZ0 NAP 42.9104
780 2VZ0 D64 42.9104
781 2WD7 NAP 42.9104
782 5B4T NAD 43.0769
783 5B4T 3HR 43.0769
784 1ZEM NAD 43.1298
785 3OID NDP 43.4109
786 1VL8 NAP 43.4457
787 1NFQ NAI 43.4615
788 3NUG NAD 43.7247
789 3D3W NAP 44.2623
790 1PR9 NAP 44.2623
791 1XHL NDP 44.4043
792 1X1T NAD 44.6154
793 1HDC CBO 44.8819
794 1O5I NAD 45.3815
795 2AE2 PTO 45.3846
796 2AE2 NAP 45.3846
797 1ZK4 NAP 45.4183
798 1ZK4 AC0 45.4183
799 1AE1 NAP 45.4212
800 2ZAT NAP 45.7692
801 1XKQ NDP 45.8484
802 2CFC NAD 46
803 5OVK NDP 46.0938
804 3ICC NAP 46.2745
805 3SJ7 NDP 46.4286
806 1GEG NAD 46.4844
807 4CQM NAP 46.7433
808 4QED NAP 46.7742
809 3AY6 BGC 46.8401
810 3AY6 NAI 46.8401
811 2WSB NAD 46.8504
812 3AFN NAP 47.2868
813 2DTX BMA 47.7273
814 6F9Q NAD 47.7941
815 1UZN NAP 48.1781
816 5OJI NAP 48.4615
817 5OJI ISN 48.4615
818 5Z2L NDP 49.3878
819 1GEE NAD 49.4253
820 4URF NAD 49.5968
Pocket No.: 2; Query (leader) PDB : 1BDB; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1bdb.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1BDB; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1bdb.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1BDB; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1bdb.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback