-->
Receptor
PDB id Resolution Class Description Source Keywords
1C4Q 1.52 Å NON-ENZYME: TOXIN_VIRAL MUTATED SHIGA-LIKE TOXIN B SUBUNIT (F30A/W34A) COMPLEXED WIT GB3 ANALOGUE ESCHERICHIA COLI TOXIN RECEPTOR BINDING PROTEIN-CARBOHYDRATE RECOGNITION O
Ref.: IDENTIFICATION OF THE PRIMARY RECEPTOR BINDING SITE SHIGA-LIKE TOXIN B SUBUNITS: STRUCTURES OF MUTATED SHIGA-LIKE TOXIN I B-PENTAMER WITH AND WITHOUT BOUN CARBOHYDRATE TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLA GAL BGC A:190;
B:290;
C:390;
D:490;
E:590;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
submit data
504.438 n/a O(C1C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1C4Q 1.52 Å NON-ENZYME: TOXIN_VIRAL MUTATED SHIGA-LIKE TOXIN B SUBUNIT (F30A/W34A) COMPLEXED WIT GB3 ANALOGUE ESCHERICHIA COLI TOXIN RECEPTOR BINDING PROTEIN-CARBOHYDRATE RECOGNITION O
Ref.: IDENTIFICATION OF THE PRIMARY RECEPTOR BINDING SITE SHIGA-LIKE TOXIN B SUBUNITS: STRUCTURES OF MUTATED SHIGA-LIKE TOXIN I B-PENTAMER WITH AND WITHOUT BOUN CARBOHYDRATE TO BE PUBLISHED
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 1QNU - GAL GAL GLC EMB MEC n/a n/a
2 1CQF - GLA GAL BGC n/a n/a
3 1D1I - GLA GAL BGC n/a n/a
4 1D1K - GLA GAL GLC n/a n/a
5 1C4Q - GLA GAL BGC n/a n/a
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 43 families.
1 2BOS - GLA GAL GLC n/a n/a
2 1QNU - GAL GAL GLC EMB MEC n/a n/a
3 1CQF - GLA GAL BGC n/a n/a
4 1D1I - GLA GAL BGC n/a n/a
5 1D1K - GLA GAL GLC n/a n/a
6 1C4Q - GLA GAL BGC n/a n/a
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 35 families.
1 2BOS - GLA GAL GLC n/a n/a
2 1QNU - GAL GAL GLC EMB MEC n/a n/a
3 1CQF - GLA GAL BGC n/a n/a
4 1D1I - GLA GAL BGC n/a n/a
5 1D1K - GLA GAL GLC n/a n/a
6 1C4Q - GLA GAL BGC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLA GAL BGC; Similar ligands found: 322
No: Ligand ECFP6 Tc MDL keys Tc
1 GLC BGC GLC 1 1
2 CE8 1 1
3 BGC GLC GLC GLC 1 1
4 CT3 1 1
5 GLA GAL GLC 1 1
6 MAN MAN BMA BMA BMA BMA 1 1
7 BGC GLC GLC 1 1
8 BGC BGC BGC BGC 1 1
9 GLC BGC BGC BGC BGC BGC 1 1
10 GLC BGC BGC 1 1
11 GLC GLC GLC GLC GLC GLC GLC GLC GLC 1 1
12 BGC GLC GLC GLC GLC 1 1
13 B4G 1 1
14 CEY 1 1
15 GLC GLC BGC 1 1
16 MAN BMA BMA BMA BMA 1 1
17 MLR 1 1
18 GAL GAL GAL 1 1
19 BGC BGC BGC BGC BGC BGC 1 1
20 MAN BMA BMA BMA BMA BMA 1 1
21 GLC BGC BGC BGC 1 1
22 CTT 1 1
23 DXI 1 1
24 CEX 1 1
25 CE5 1 1
26 GLC GLC GLC GLC GLC 1 1
27 BMA MAN BMA 1 1
28 CE6 1 1
29 BGC BGC BGC BGC BGC BGC BGC BGC BGC 1 1
30 GLA GAL BGC 1 1
31 BMA BMA BMA 1 1
32 MTT 1 1
33 MAN BMA BMA 1 1
34 GLC GAL GAL 1 1
35 BGC BGC BGC 1 1
36 BGC BGC BGC BGC BGC 1 1
37 BGC GLC GLC GLC GLC GLC GLC 1 1
38 BGC BGC GLC 1 1
39 BMA BMA BMA BMA BMA BMA 1 1
40 BMA BMA BMA BMA BMA 1 1
41 CTR 1 1
42 GLC BGC BGC BGC BGC 1 1
43 BGC BGC BGC GLC 1 1
44 MT7 1 1
45 LBT 0.909091 1
46 BMA GAL 0.909091 1
47 GLA GLA 0.909091 1
48 CBI 0.909091 1
49 LAT 0.909091 1
50 BGC GAL 0.909091 1
51 BGC BMA 0.909091 1
52 GLC GAL 0.909091 1
53 MAL 0.909091 1
54 GLA GAL 0.909091 1
55 B2G 0.909091 1
56 GAL BGC 0.909091 1
57 CBK 0.909091 1
58 MAB 0.909091 1
59 N9S 0.909091 1
60 BGC BGC BGC BGC BGC BGC BGC BGC 0.830189 1
61 LAT GLA 0.765957 1
62 BMA BMA GLA BMA BMA 0.758621 1
63 GLA GAL GAL 0.754717 1
64 GLC GLC GLC BGC 0.741379 1
65 BMA BMA BMA BMA 0.672414 0.941176
66 MMA MAN 0.653846 0.942857
67 DR5 0.653846 0.942857
68 NGA GAL BGC 0.650794 0.733333
69 GLA EGA 0.648148 0.942857
70 XYS BGC BGC XYS BGC XYS BGC BGC BGC 0.647059 0.942857
71 XYS BGC BGC BGC BGC XYS BGC BGC BGC 0.647059 0.942857
72 BGC BGC BGC XYS BGC BGC 0.647059 0.942857
73 XYT 0.637931 0.767442
74 ABD 0.637681 0.75
75 GAL NGA GLA BGC GAL 0.628571 0.733333
76 GLC GLC XYP 0.622951 1
77 GLA GAL BGC 5VQ 0.62069 0.891892
78 G2F BGC BGC BGC BGC BGC 0.616667 0.868421
79 BGC BGC XYS BGC 0.61194 0.942857
80 MAL EDO 0.607143 0.942857
81 U63 0.6 0.891892
82 BGC BGC BGC XYS GAL 0.6 0.942857
83 NGA GLA GAL BGC 0.591549 0.733333
84 GLA GAL GLC NBU 0.590164 0.846154
85 M3M 0.584906 1
86 LB2 0.584906 1
87 NGR 0.584906 1
88 MAN GLC 0.584906 1
89 BGC BGC BGC FRU 0.580645 0.868421
90 LAT NAG GAL 0.577465 0.733333
91 GLC GAL NAG GAL 0.577465 0.733333
92 BGC GLA GAL FUC 0.573529 0.970588
93 G2I 0.571429 0.767442
94 LAT FUC 0.571429 0.970588
95 GAL FUC 0.571429 0.941176
96 BGC GAL NAG GAL 0.571429 0.733333
97 OXZ BGC BGC 0.571429 0.6875
98 GAL NAG GAL GLC 0.571429 0.733333
99 BGC GAL FUC 0.571429 0.970588
100 FUC GAL GLC 0.571429 0.970588
101 GLC GLC G6D ACI GLC GLC GLC 0.571429 0.733333
102 G3I 0.571429 0.767442
103 GLC GAL FUC 0.571429 0.970588
104 8B7 0.571429 0.970588
105 2M4 0.566038 1
106 BQZ 0.56 0.909091
107 GLC GLC XYS 0.553846 0.970588
108 SOR GLC GLC GLC 0.545455 0.970588
109 GLO GLC GLC GLC 0.545455 0.970588
110 BGC BGC BGC XYS BGC XYS GAL 0.545455 0.942857
111 LAG 0.545455 0.6
112 GAL BGC BGC BGC XYS BGC XYS 0.545455 0.942857
113 GLC GLC DAF BGC 0.54321 0.702128
114 GLC GLC AGL HMC GLC 0.54321 0.702128
115 ARE 0.54321 0.733333
116 ACR GLC GLC GLC 0.54321 0.702128
117 GLC GLC ACI G6D GLC GLC 0.54321 0.702128
118 AAO 0.54321 0.733333
119 GLC BGC BGC XYS BGC XYS XYS 0.541667 0.942857
120 BGC BGC XYS BGC XYS BGC XYS 0.541667 0.942857
121 BGC BGC BGC XYS BGC XYS XYS 0.541667 0.942857
122 GAL NDG 0.540984 0.733333
123 NLC 0.540984 0.733333
124 5GO 0.540984 0.66
125 NDG GAL 0.540984 0.733333
126 GAL BGC BGC XYS 0.536232 0.942857
127 BGC BGC BGC GLC BGC BGC 0.534483 1
128 GLC BGC BGC BGC BGC BGC BGC 0.534483 1
129 DEL 0.534483 0.970588
130 MVP 0.533333 0.733333
131 SGA BGC 0.532258 0.66
132 TRE 0.531915 1
133 BGC BGC 0.526316 0.914286
134 BMA BMA 0.526316 0.914286
135 LMT 0.523077 0.785714
136 LMU 0.523077 0.785714
137 UMQ 0.523077 0.785714
138 DMU 0.523077 0.785714
139 NAG GAL BGC 0.521127 0.733333
140 GLC ACI GLD GLC 0.519481 0.733333
141 GLC G6D ACI GLC 0.519481 0.733333
142 GLC G6D ADH GLC 0.519481 0.733333
143 GLC ACI G6D BGC 0.519481 0.733333
144 GAL XYS XYS BGC BGC BGC XYS GAL BGC 0.518519 0.942857
145 GAL BGC BGC BGC XYS XYS 0.518519 0.942857
146 GLC BGC BGC XYS BGC XYS XYS GAL 0.518519 0.942857
147 GLC BGC BGC XYS BGC XYS XYS GAL GAL 0.518519 0.942857
148 BGC BGC XYS BGC GAL XYS BGC XYS GAL 0.518519 0.942857
149 BMA MAN MAN MAN 0.516129 1
150 FUC BGC GAL 0.515625 0.970588
151 SOR GLC GLC 0.515152 0.970588
152 RCB 0.514286 0.622642
153 GAL BGC NAG GAL 0.513889 0.733333
154 GLA MBG 0.509091 0.942857
155 ACI GLD GLC GAL 0.506667 0.733333
156 DAF GLC GLC 0.506667 0.733333
157 DAF BGC GLC 0.506667 0.733333
158 6UZ 0.5 0.846154
159 TXT 0.5 0.767442
160 GAC 0.5 0.767442
161 BMA BMA MAN 0.5 1
162 MAN MAN BMA 0.5 1
163 GLC ACI GLD GAL 0.493827 0.702128
164 GLC ACI G6D GLC 0.493827 0.702128
165 QV4 0.493827 0.733333
166 GLC GLC GLC PO4 SGC GLC 0.487805 0.66
167 NPJ 0.485714 0.622642
168 MAN BMA MAN 0.484375 1
169 ACR 0.481013 0.733333
170 QPS 0.481013 0.733333
171 4MU BGC BGC BGC BGC 0.480519 0.767442
172 GAL NAG MAN 0.478873 0.733333
173 DOM 0.474576 0.942857
174 GLO GLC GLC 0.472222 0.942857
175 GLA GAL NAG 0.471429 0.733333
176 10M 0.471429 0.733333
177 MAN BMA NAG 0.471429 0.733333
178 GAL GAL SO4 0.469697 0.66
179 8VZ 0.46875 0.673469
180 FMO 0.467742 0.868421
181 4MU BGC BGC 0.467532 0.767442
182 BGC BGC SGC MGL 0.465753 0.868421
183 MGL SGC GLC GLC 0.465753 0.868421
184 CM5 0.465753 0.891892
185 MGL SGC BGC BGC 0.465753 0.868421
186 ACR GLC 0.4625 0.702128
187 ACR GLC GLC GLC GLC 0.4625 0.702128
188 NAG GAL GAL NAG GAL 0.460526 0.6875
189 CGC 0.460317 0.941176
190 MA4 0.459459 0.891892
191 5QP 0.459016 0.885714
192 ACI G6D GLC ACI G6D BGC 0.457831 0.702128
193 ACI GLD GLC GLC GLC ACI GLD GLC GAL 0.457831 0.702128
194 BGC GLC AC1 GLC GLC GLC AC1 0.457831 0.702128
195 AC1 GLC AC1 BGC 0.457831 0.702128
196 DAF GLC DAF GLC GLC 0.457831 0.702128
197 ACI GLD GLC ACI G6D BGC 0.457831 0.702128
198 M13 0.457627 0.942857
199 MDM 0.457627 0.942857
200 GAL MBG 0.457627 0.942857
201 RZM 0.457627 0.688889
202 LSE 0.457143 0.6875
203 GLA GAL NAG FUC GAL GLC 0.454545 0.717391
204 G6D GLC ACI GLD GLC ACI GLD GLC BGC 0.453488 0.653061
205 GTM BGC BGC 0.450704 0.868421
206 MAN MAN MAN MAN 0.449275 1
207 MAN MAN BMA MAN 0.449275 1
208 ACG 0.448276 0.695652
209 NAG BMA 0.447761 0.653061
210 FUC GAL NAG GAL BGC 0.447059 0.717391
211 GAL GLC NAG GAL FUC 0.447059 0.717391
212 GLC NAG GAL GAL FUC 0.447059 0.717391
213 GAL A2G 0.446154 0.733333
214 A2G GAL 0.446154 0.733333
215 GAL NGA 0.446154 0.733333
216 BMA MAN MAN MAN MAN 0.444444 1
217 MAN BMA MAN MAN MAN 0.442857 1
218 M5S 0.442857 1
219 NAG GAL GAL NAG 0.441558 0.6875
220 GAL NAG GAL NAG GAL NAG 0.441558 0.673469
221 MAN MAN MAN GLC 0.441176 1
222 GLA GLC 0.440678 1
223 BGC GLA 0.440678 1
224 MAN BMA 0.440678 1
225 BGC GLC 0.440678 1
226 GLA BGC 0.440678 1
227 MAN MAN 0.440678 1
228 GLC BGC 0.440678 1
229 BMA MAN 0.440678 1
230 LAK 0.440678 1
231 GAL GAL 0.440678 1
232 BMA GLA 0.440678 1
233 GLA BMA 0.440678 1
234 GAL GLC 0.440678 1
235 MLB 0.440678 1
236 GLC GLC 0.440678 1
237 DAF GLC 0.44 0.733333
238 DAF BGC 0.44 0.733333
239 BGC SGC BGC SGC BGC SGC BGC SGC 0.438356 0.916667
240 TM6 0.438356 0.916667
241 ABL 0.4375 0.702128
242 FRU GAL 0.435484 0.842105
243 BMA FRU 0.435484 0.842105
244 FUC GAL GLA 0.432836 0.970588
245 GLA GAL FUC 0.432836 0.970588
246 GLA GLA FUC 0.432836 0.970588
247 GAL GAL FUC 0.432836 0.970588
248 FUC GLA GLA 0.432836 0.970588
249 BMA IFM 0.428571 0.711111
250 A2G GAL BGC FUC 0.428571 0.717391
251 BGC OXZ 0.428571 0.666667
252 IFM BGC 0.428571 0.711111
253 VAM 0.428571 0.868421
254 IFM BMA 0.428571 0.711111
255 GLF B8D 0.428571 0.775
256 9MR 0.428571 0.744186
257 ISX 0.428571 0.761905
258 BGC GAL NAG GAL FUC FUC 0.426966 0.702128
259 7SA 0.426966 0.702128
260 GLC GAL NAG GAL FUC FUC 0.426966 0.702128
261 MAN MAN MAN BMA MAN 0.426667 1
262 GLC GLC GLC GLC GLC BGC 0.42623 1
263 BMA MAN MAN 0.42623 1
264 GLC GLC GLC 0.42623 1
265 MAN MAN MAN 0.42623 1
266 GLC GLC GLC GLC BGC 0.42623 1
267 NOJ GLC 0.421875 0.695652
268 GLC DMJ 0.421875 0.695652
269 NOY BGC 0.421875 0.702128
270 MAN MNM 0.421875 0.702128
271 PA1 GCS 0.419355 0.767442
272 GCS GCS 0.419355 0.767442
273 HMC AGL GLC 0.417722 0.717391
274 3SA 0.417722 0.733333
275 GAL 0.416667 0.848485
276 GXL 0.416667 0.848485
277 ALL 0.416667 0.848485
278 6SA 0.416667 0.733333
279 GLA 0.416667 0.848485
280 GLC 0.416667 0.848485
281 MAN 0.416667 0.848485
282 XZZ BGC BGC 0.416667 0.702128
283 WOO 0.416667 0.848485
284 BMA 0.416667 0.848485
285 BGC 0.416667 0.848485
286 GIV 0.416667 0.848485
287 HSD G6D GLC HSD G6D GLC BGC 0.41573 0.673469
288 ACI G6D GLC ACI G6D GLC GLC 0.41573 0.673469
289 HSD G6D GLC HSD G6D GLC GLC 0.41573 0.673469
290 ACI GLD GLC ACI GLD GLC ACI GLD GLC GLC 0.41573 0.673469
291 GAL NAG GAL 0.415584 0.702128
292 GCS GCS GCS GCS GCS 0.415385 0.767442
293 GCS GCS GCS GCS GCS GCS 0.415385 0.767442
294 GCS GCS GCS 0.415385 0.767442
295 P3M 0.414286 0.767442
296 MAN DGO 0.412698 0.914286
297 AGL GLC HMC AGL GLC BGC 0.411111 0.653061
298 NAG NDG BMA 0.410256 0.634615
299 NAG NAG BMA 0.410256 0.634615
300 T6P 0.409836 0.767442
301 GDQ GLC 0.409091 0.666667
302 MAN G63 0.409091 0.653061
303 FUC BGC GAL NAG GAL 0.409091 0.717391
304 AMG 0.403846 0.857143
305 GYP 0.403846 0.857143
306 MMA 0.403846 0.857143
307 MBG 0.403846 0.857143
308 MAN 7D1 0.403226 0.888889
309 GAL MGC 0.402985 0.702128
310 BGC BGC XYS BGC XYS GAL 0.4 0.916667
311 Z6J 0.4 0.742857
312 RIB 0.4 0.742857
313 FUC NDG GAL 0.4 0.717391
314 A2G MBG 0.4 0.702128
315 A2G GAL NAG FUC GAL GLC 0.4 0.673469
316 AHR 0.4 0.742857
317 GLC GAL NAG GAL FUC A2G 0.4 0.673469
318 MAN MAN MAN MAN MAN MAN MAN 0.4 1
319 GAL NDG FUC 0.4 0.717391
320 FUB 0.4 0.742857
321 32O 0.4 0.742857
322 MBG A2G 0.4 0.702128
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1C4Q; Ligand: GLA GAL BGC; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 1c4q.bio1) has 80 residues
No: Leader PDB Ligand Sequence Similarity
1 4DDY DN6 10.1449
2 1GPM AMP 17.3913
Pocket No.: 2; Query (leader) PDB : 1C4Q; Ligand: GLA GAL BGC; Similar sites found with APoc: 140
This union binding pocket(no: 2) in the query (biounit: 1c4q.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1Q19 APC None
2 2YYY NAP None
3 3BBH SFG None
4 4TM3 FAD None
5 3O7B SAH None
6 3CBG SAH None
7 2JBM SRT None
8 1K97 CIR None
9 1K97 ASP None
10 2FKA BEF None
11 1T57 FMN None
12 4BV6 FAD None
13 1MJH ATP None
14 5O96 SAM None
15 2F1K NAP None
16 1MAI I3P None
17 3BBD SAH None
18 3GE7 AFQ None
19 3RK1 ATP None
20 3AIH BMA MAN MAN None
21 5KJW 53C None
22 3L8G GMB None
23 3ZF8 GDP None
24 4ITH RCM None
25 5AHO TLA None
26 3DMH SAM None
27 3Q87 SAM None
28 3G6K FAD None
29 3G6K POP None
30 3U31 NAD None
31 3FIU AMP None
32 5FOM A2H None
33 3DMH GMP None
34 5AGR A52 None
35 2V0C ANZ None
36 3VYW SAM None
37 2PWY SAH None
38 5LYH 7B8 None
39 6ECW SAH None
40 5AHW CMP None
41 3HGM ATP None
42 3SJ7 NDP None
43 3A4V NAD None
44 3A4V PYR None
45 5Y77 FAD None
46 2HNK SAH None
47 2OQ2 A3P None
48 5BRT FAD None
49 2AJH MET None
50 3HVJ 705 None
51 2P69 PLP 2.89855
52 6EQS BV8 2.89855
53 1N62 FAD 2.89855
54 2ART LPA AMP 2.89855
55 5EIN NAP 4.34783
56 2IV2 MGD 4.34783
57 2RCU BUJ 4.34783
58 4B63 NAP 4.34783
59 4B63 ORN 4.34783
60 4B63 FAD 4.34783
61 2VVM FAD 4.34783
62 1KOR ARG 4.34783
63 1KOR ANP 4.34783
64 1KOR SIN 4.34783
65 1S4P GDP 4.34783
66 5GT9 NAP 4.34783
67 1CT9 AMP 4.34783
68 1S4P MMA 4.34783
69 2X06 NAD 4.34783
70 4AMV F6R 4.34783
71 1MOQ GLP 4.34783
72 4UUG PXG 5.7971
73 5WS9 AMP 5.7971
74 4L2I FAD 5.7971
75 1U8X NAD 7.24638
76 5KVA SAM 7.24638
77 3OII SAH 7.24638
78 5ECP ATP 7.24638
79 5ECP MET 7.24638
80 5ECP JAA 7.24638
81 2C5S AMP 7.24638
82 4TXI FAD 7.24638
83 6EMU SAM 7.24638
84 6CEP OXM 7.24638
85 6CEP NAD 7.24638
86 3GMB FAD 7.24638
87 4YRY NAD 8.69565
88 4YRY FAD 8.69565
89 3S5W FAD 8.69565
90 3ICR FAD 8.69565
91 4CE5 PDG 10.1449
92 1O94 AMP 10.1449
93 4Y9J FAD 10.1449
94 3RGZ BLD 10.1449
95 3AD8 NAD 10.1449
96 5TUK FAD 10.1449
97 2YVJ FAD 11.5942
98 1P9P SAH 11.5942
99 1RLZ NAD 11.5942
100 5KOK SAH 13.0435
101 3QDK QDK 13.0435
102 5KOK S9T 13.0435
103 3DLA NXX 13.0435
104 5F7J ADE 13.0435
105 2VAP GDP 13.0435
106 3C3Y SAH 14.4928
107 1JGT APC 14.4928
108 1JGT CMA 14.4928
109 1EFV AMP 14.4928
110 1EFV FAD 14.4928
111 4D42 NAP 14.4928
112 4D42 W0I 14.4928
113 3GD4 FAD 14.4928
114 2YG3 FAD 14.4928
115 2GAG NAD 14.4928
116 5A07 GDP 14.4928
117 4XFR CIT 14.4928
118 5JCM FAD 15.942
119 5JCM NAD 15.942
120 5JCM ISD 15.942
121 1B63 ANP 15.942
122 1LVL NAD 15.942
123 4K7O EKZ 15.942
124 6B2M COA 17.3913
125 2B5W NAP 17.3913
126 1E6E FAD 17.3913
127 5E72 SAM 18.8406
128 1UP7 NAD 18.8406
129 3OID NDP 18.8406
130 1CF2 NAP 20.2899
131 3NK7 SAM 20.2899
132 4MO2 FDA 21.7391
133 4MO2 FAD 21.7391
134 2WFG ZZB 23.1884
135 5FFF NAP 24.6377
136 5FEU NAP 24.6377
137 3DR4 G4M 27.5362
138 1XNG ATP 30.4348
139 5THQ NDP 31.8841
140 4JDR FAD 33.3333
Pocket No.: 3; Query (leader) PDB : 1C4Q; Ligand: GLA GAL BGC; Similar sites found with APoc: 4
This union binding pocket(no: 3) in the query (biounit: 1c4q.bio1) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 2P0D I3P None
2 4IF4 BEF None
3 4DE3 DN8 10.1449
4 2VDY HCY 21.7391
Pocket No.: 4; Query (leader) PDB : 1C4Q; Ligand: GLA GAL BGC; Similar sites found with APoc: 38
This union binding pocket(no: 4) in the query (biounit: 1c4q.bio1) has 73 residues
No: Leader PDB Ligand Sequence Similarity
1 2HO2 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU None
2 4IAW LIZ None
3 1H3F TYE None
4 6DZN AE3 None
5 6FA4 D1W None
6 4TS1 TYR None
7 1Y42 TYR None
8 4Y24 TD2 None
9 1SDW IYT None
10 1L5Y BEF None
11 4RDN 6MD None
12 4X17 SIA SIA None
13 1F52 ADP None
14 3QRC SCR None
15 6GNO XDI None
16 3FGZ BEF None
17 3M3E GAL A2G NPO None
18 3VV1 GAL FUC 2.5
19 1KJ1 MAN 2.89855
20 5J75 6GQ 5.7971
21 4FFG LBS 5.7971
22 5F6U 5VK 7.24638
23 4LED XXR 8.69565
24 4YVN EBS 8.69565
25 5GLT BGC GAL NAG GAL 8.69565
26 2YMZ LAT 8.69565
27 2J5B TYE 10.1449
28 5OQW A4E 10.1449
29 3CM2 X23 10.1449
30 2D6M LBT 11.5942
31 4MJ0 SIA SIA GAL 13.0435
32 4MJ0 BGC SIA SIA GAL 13.0435
33 3NV3 GAL NAG MAN 13.0435
34 3WV6 GAL BGC 14.4928
35 1XE7 GUN 14.4928
36 1RJW ETF 17.3913
37 4RF7 ARG 17.3913
38 1Y7P RIP 34.7826
Pocket No.: 5; Query (leader) PDB : 1C4Q; Ligand: GLA GAL BGC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1c4q.bio1) has 49 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback