Receptor
PDB id Resolution Class Description Source Keywords
1D2E 1.94 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP BOS TAURUS G-PROTEIN BETA-BARREL RNA BINDING PROTEIN
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP. J.MOL.BIOL. V. 297 421 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:1301;
B:1302;
C:1303;
D:1304;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
Kd = 1 uM
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:501;
B:502;
C:503;
D:504;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1D2E 1.94 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP BOS TAURUS G-PROTEIN BETA-BARREL RNA BINDING PROTEIN
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP. J.MOL.BIOL. V. 297 421 2000
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 257 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
6 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 4LC0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 1EXM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 2C78 - PUL C47 H66 O13 C[C@@H]1[C....
10 1EFT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 4LBV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 4LBW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
13 1HA3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (17)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
6 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 4LC0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 1EXM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 2C78 - PUL C47 H66 O13 C[C@@H]1[C....
10 1EFT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 4LBV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 4LBW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
13 1HA3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 1SKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 1JNY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 3WYA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1d2e.bio1) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found: 509
This union binding pocket(no: 2) in the query (biounit: 1d2e.bio1) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4WZ6 ATP 0.00001677 0.56346 0.689655
2 3N5C GDP 0.0000000002054 0.77396 1.23457
3 1D5C GDP 0.000000005873 0.67615 1.23457
4 1AZT GSP 0.000000005595 0.53962 1.25945
5 2J5V PCA 0.03882 0.40699 1.3624
6 1S3G AP5 0.001931 0.45918 1.38249
7 1R0X ATP 0.0001309 0.44609 1.3986
8 2VVG ADP 0.0000001569 0.4887 1.42857
9 2BIF ANP 0.0004344 0.4827 1.51134
10 2BIF SIN 0.0007416 0.4827 1.51134
11 3P4X ADP 0.0001088 0.45238 1.51134
12 5GJC ATP 0.000157 0.44978 1.51134
13 1Z6T ADP 0.0004571 0.44588 1.51134
14 3EWA ANP 0.0001367 0.45185 1.5528
15 3FKQ ATP 0.00005216 0.48675 1.60858
16 3AQ4 GDP 0.0000000003206 0.75186 1.63043
17 2Y65 ADP 0.0000003737 0.49539 1.64384
18 4KBF AMP 0.002343 0.40273 1.64384
19 1R6B ADP 0.0001544 0.46073 1.76322
20 4IOK ADP 0.000947 0.45922 1.76322
21 4IOK XPO 0.000935 0.45436 1.76322
22 2XAU ADP 0.001581 0.42549 1.76322
23 1K6M AGS 0.0003563 0.4182 1.76322
24 1O3Y GTP 0.00000001152 0.58317 1.80723
25 1J2J GTP 0.00000003055 0.56818 1.80723
26 4FRZ ADP 0.000003223 0.48081 1.81347
27 5MEX PAP 0.007628 0.40554 1.86335
28 3PCR GTP 0.00000001574 0.57929 1.96078
29 5TIV A3P 0.00767 0.43307 1.97628
30 2ODE ALF GDP 0.000000007537 0.69898 2
31 5GOE GDP 0.0000000001811 0.75095 2.01511
32 1M2O GNP 0.00000001746 0.67404 2.01511
33 4LYA ATP 0.00001088 0.54153 2.01511
34 2FAH GDP 0.0001078 0.48351 2.01511
35 5VGR GDP 0.0001721 0.46427 2.01511
36 1YQT ADP 0.00001142 0.4597 2.01511
37 2XVF FAD 0.04708 0.41508 2.01511
38 1OYY AGS 0.008619 0.41103 2.01511
39 4OHY ANP 0.0005861 0.40492 2.01511
40 3B7G ANP 0.0005878 0.46108 2.17391
41 2ZFI ADP 0.00001377 0.54423 2.18579
42 4ZNL BEF ADP 0.00004105 0.48328 2.18978
43 4M9Q GNP 0.0000000008726 0.6361 2.20264
44 1ZCB GDP 0.000000008036 0.68957 2.20994
45 5CK5 GDP 0.00000005207 0.58662 2.21519
46 1G41 ADP 0.0001433 0.48364 2.267
47 5XDR ADP 0.001359 0.44418 2.267
48 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 0.009642 0.40561 2.267
49 1SQ5 ADP 0.00003608 0.51735 2.27273
50 4LHW GNP 0.00000002765 0.54497 2.29885
51 3FIU POP 0.01793 0.40419 2.40964
52 3TK1 GDP 0.00000000004315 0.67486 2.42424
53 2GCN GDP 0.000000105 0.62981 2.48756
54 2GCO GNP 0.00000006675 0.6291 2.48756
55 5WRI A3P 0.001498 0.44131 2.5
56 5KSZ GCP 0.0000003876 0.58103 2.51889
57 5I34 GDP 0.00001207 0.50948 2.51889
58 5IRN ADP 0.00007101 0.49155 2.51889
59 1YTM ATP 0.00007019 0.46182 2.51889
60 2IS6 ADP 0.00009999 0.45716 2.51889
61 4PJ3 ANP 0.002726 0.42138 2.51889
62 4YS0 ADP 0.002311 0.41756 2.51889
63 1LVG ADP 0.000001325 0.50943 2.52525
64 3LRE ADP 0.0000004226 0.65944 2.53521
65 1FNN ADP 0.0007181 0.42995 2.57069
66 2OBM ADP 0.0007297 0.48154 2.59366
67 3DC4 ADP 0.00002306 0.45969 2.61628
68 5WRJ A3P 0.001575 0.44398 2.64026
69 1Z06 GNP 0.000000005768 0.57991 2.6455
70 4H1V GNP 0.0000007604 0.56534 2.71003
71 2ZPT A3P 0.03163 0.41051 2.71186
72 1G6H ADP 0.000004478 0.60479 2.72374
73 1G6O ADP 0.0002046 0.47663 2.72727
74 1XP8 AGS 0.00006399 0.45595 2.73224
75 1NST A3P 0.002893 0.42241 2.76923
76 1V8K ANP 0.00002841 0.52926 2.77078
77 4ZG4 VO4 ADP 0.0004668 0.46629 2.77078
78 2VF7 ADP 0.0003423 0.44568 2.77078
79 1NHX PEP 0.007274 0.4342 2.77078
80 1NHX FTB 0.007602 0.4342 2.77078
81 4DKX GDP 0.00000000007752 0.79409 2.77778
82 2ZTS ADP 0.0007276 0.42817 2.78884
83 1VKJ A3P 0.0092 0.40371 2.80702
84 4TMK T5A 0.01611 0.40807 2.8169
85 1XTQ GDP 0.000000004538 0.69494 2.82486
86 4BQS ADP 0.00003481 0.52506 2.84091
87 4BQS K2Q 0.0008401 0.47177 2.84091
88 5K5Z ANP 0.0004133 0.47063 2.86624
89 4E03 ADP 0.00002972 0.49129 2.91262
90 1GWN GTP 0.00000003925 0.64608 2.92683
91 4LJ9 ACP 0.0003814 0.43824 2.94985
92 1RYH GNP 0.00000001801 0.6374 2.95567
93 2F9L GDP 0.000000003347 0.60063 3.01508
94 5JCP GDP ALF 0.00000008227 0.6049 3.02267
95 4WZA ADP 0.0001116 0.53829 3.02267
96 4WZA ACP 0.0001891 0.52669 3.02267
97 1IHU ADP 0.000006084 0.48364 3.02267
98 1IHU AF3 0.00001316 0.47912 3.02267
99 2IXE ATP 0.0007766 0.45426 3.02267
100 5LB3 ADP 0.0001356 0.44899 3.02267
101 5MZN ADP 0.0007365 0.41247 3.02267
102 4RZ3 ADP 0.0001055 0.48654 3.05085
103 4YDS ATP 0.00002289 0.54958 3.07018
104 2HF9 GSP 0.000000487 0.57367 3.09735
105 1OW3 GDP 0.0000001521 0.61316 3.10881
106 4D81 ADP 0.0002575 0.46678 3.18021
107 2XT3 ADP 0.0000007921 0.63845 3.19767
108 3SBD GNP 0.0000002445 0.51386 3.20856
109 3BD9 A3P 0.008762 0.40652 3.21429
110 4FCW ADP 0.0002149 0.4556 3.21543
111 1MH1 GNP 0.00000009196 0.64337 3.22581
112 5IRC GDP 0.0000004744 0.57663 3.22581
113 3LXR GDP 0.00000004259 0.64347 3.24324
114 4WEI GLC GAL 0.005204 0.43356 3.2491
115 1KMQ GNP 0.0000001671 0.6235 3.26087
116 1M7B GTP 0.00000002396 0.59615 3.26087
117 1TQ4 GDP 0.000000005214 0.62308 3.27456
118 4HSE ADP 0.0001037 0.49606 3.27456
119 2UUU FAD 0.02642 0.41518 3.27456
120 2UUU PL3 0.02642 0.41518 3.27456
121 3T5G GDP 0.000000001132 0.68845 3.28947
122 2WKQ GTP 0.0000001329 0.54317 3.31325
123 4YC7 GNP 0.00000007444 0.6366 3.31492
124 1H65 GDP 0.00001111 0.53796 3.33333
125 4JLV ADP 0.0002478 0.43813 3.34572
126 4XSH GSP 0.0000001038 0.62386 3.35196
127 2Y8E GNP 0.000000008054 0.56362 3.35196
128 2Z5F A3P 0.005169 0.41505 3.3557
129 1AQU A3P 0.004472 0.41396 3.367
130 2FJU GSP 0.00000007993 0.63215 3.37079
131 4U5X GNP 0.00000008255 0.62833 3.37079
132 3MD0 GDP 0.00000000004139 0.69229 3.38028
133 1TX4 ALF GDP 0.0000002911 0.53281 3.38983
134 1JJV ATP 0.00002386 0.45415 3.39806
135 1G3M PCQ 0.0108 0.42188 3.40136
136 1G3M A3P 0.0108 0.42188 3.40136
137 5X40 ACP 0.001252 0.44674 3.42466
138 4PPF FLC 0.00000359 0.60284 3.42857
139 3DEF GDP 0.000004109 0.54634 3.43511
140 2QZ4 ADP 0.00009271 0.478 3.43511
141 2ZR9 DTP 0.00007016 0.51057 3.4384
142 3UIE ANP 0.0000724 0.48278 3.5
143 1XKV ATP 0.0002717 0.45935 3.52645
144 4XGU ADP 0.0002783 0.45588 3.52645
145 1G16 GDP 0.0000000366 0.65059 3.52941
146 1YVD GNP 0.00000002052 0.55053 3.5503
147 1U8Z GDP 0.000000008252 0.58677 3.57143
148 4Q1A 2XZ 0.003649 0.49471 3.57143
149 4Q1A UDP 0.003649 0.49471 3.57143
150 3CPJ GDP 0.00000001506 0.65419 3.58744
151 3NHB ADP 0.00001798 0.56191 3.59477
152 3REF GDP 0.00000009493 0.55899 3.60825
153 5M04 GDP 0.0000000001257 0.68086 3.61111
154 4P4T GDP 0.0000002638 0.57033 3.61111
155 3T34 GDP 0.000003923 0.49223 3.61111
156 4P32 ADP 0.001076 0.44783 3.61446
157 3BFX A3P 0.001885 0.41414 3.71622
158 4D0N GDP 0.000000004857 0.63078 3.75335
159 2ZPA ADP 0.0004521 0.46065 3.77834
160 4IHQ ADP 0.0001407 0.44538 3.77834
161 2ZEJ GDP 0.0000000391 0.66056 3.80435
162 2PL3 ADP 0.0004088 0.48023 3.81356
163 5HCN GCP 0.00000003904 0.61388 3.83142
164 3QKT ANP 0.001313 0.4476 3.83481
165 3SFV GDP 0.00000001705 0.66242 3.8674
166 2PZE ATP 0.000006467 0.45508 3.93013
167 1GOJ ADP 0.0000001777 0.68188 3.94366
168 2XTZ GSP 0.000000005015 0.69901 3.9548
169 1SVK ALF GDP 0.000000006767 0.7037 3.96601
170 3NKV GNP 0.00000001788 0.55104 4
171 3QF7 ANP 0.0007583 0.45058 4
172 2G77 GDP 0.000000001003 0.68543 4.03023
173 5FTB ANP 0.0002962 0.46935 4.03023
174 4PFO ADP 0.0004984 0.46873 4.03023
175 5I0H ADP BEF 0.0003426 0.46827 4.03023
176 2VB6 ADP BEF 0.0005149 0.46435 4.03023
177 5LTJ ADP 0.0003645 0.44473 4.03023
178 5FHD ADP ALF 0.0004186 0.42985 4.03023
179 2G77 AF3 0.007579 0.4277 4.03023
180 1UAD GNP 0.00000001588 0.67593 4.0404
181 4AG5 ADP 0.00002292 0.55562 4.08163
182 3PQC GDP 0.00000005368 0.63892 4.10256
183 1YZQ GNP 0.000000006726 0.69595 4.11765
184 1FP6 ADP 0.00001723 0.51878 4.15225
185 4LC1 GDP 0.0000000004784 0.75648 4.1543
186 2A5J GDP 0.000000001786 0.7059 4.18848
187 3A4M ADP 0.000008046 0.47823 4.23077
188 1Y3A GDP 0.0000000123 0.67519 4.25532
189 5IFS ADP 0.0002126 0.4626 4.28212
190 3RC3 ANP 0.003128 0.43704 4.28212
191 1F5N GNP 0.0003228 0.40224 4.28212
192 1BG2 ADP 0.00000009439 0.49505 4.30769
193 1YZN GNP 0.00000002658 0.53498 4.32432
194 2ZE7 DST 0.01138 0.40748 4.34783
195 2ZE7 AMP 0.01084 0.407 4.34783
196 1GXU 2HP 0.001829 0.42897 4.3956
197 1FZQ GDP 0.00000000003709 0.71708 4.41989
198 1UKZ ADP 0.001579 0.45608 4.4335
199 1BH2 GSP 0.00000002122 0.67799 4.44444
200 3IIJ ADP 0.00002127 0.48599 4.44444
201 2AWN ADP 0.000001517 0.63283 4.46194
202 1Z0F GDP 0.0000000005491 0.68643 4.46927
203 1XMV ADP 0.00007002 0.47277 4.49438
204 2GDJ ANP 0.000248 0.48447 4.54545
205 4D0G GTP 0.000000003677 0.69587 4.57143
206 1Z0A GDP 0.000000001135 0.68844 4.5977
207 1JJ7 ADP 0.000002458 0.62118 4.61538
208 4NON GDP 0.00000000971 0.53911 4.61538
209 4DID GDP 0.00000001267 0.67772 4.66321
210 4V03 ADP 0.00002773 0.50085 4.66926
211 2FFQ GSP 0.000000007122 0.6948 4.67836
212 1UPT GTP 0.00000003113 0.65377 4.67836
213 3MGB PAP 0.009121 0.40388 4.70219
214 1R2Q GNP 0.000000008362 0.70868 4.70588
215 1EK0 GNP 0.00000002645 0.54519 4.70588
216 1CS4 GSP 0.00000001847 0.53397 4.71698
217 1CR1 TTP 0.0003409 0.46837 4.72973
218 2WMO GTP 0.00000003388 0.64798 4.73684
219 5KSP GDP 0.0000000405 0.60855 4.73684
220 4DSU GDP 0.00000000947 0.68907 4.7619
221 5UQW GDP 0.00000001022 0.68186 4.7619
222 5BQ5 ADP BEF 0.0002449 0.47308 4.7619
223 1IWE IMP 0.0002041 0.54682 4.78589
224 2WHX ADP 0.00003672 0.44519 4.78589
225 2JLR ANP 0.000834 0.44417 4.78589
226 1VG8 GNP 0.000000008936 0.69024 4.83092
227 1VG0 GDP 0.000000004565 0.67714 4.83092
228 2RGX AP5 0.002607 0.45499 4.85437
229 5TAR GDP 0.000000004956 0.67556 4.86486
230 5TB5 GDP 0.000000002862 0.67155 4.86486
231 3TKL GTP 0.00000001891 0.56196 4.86891
232 1T5C ADP 0.0000004644 0.47489 4.87106
233 5J1S ATP 0.0005873 0.46363 4.87805
234 1ION ADP 0.00002165 0.50651 4.93827
235 2W58 ADP 0.000004943 0.60309 4.9505
236 2C9O ADP 0.0002655 0.43797 5.03778
237 2FNA ADP 0.00006813 0.45165 5.04202
238 1VHT BA3 0.0005675 0.45654 5.04587
239 1G3Q ADP 0.00001718 0.53231 5.06329
240 1KO8 6PG 0.0007794 0.45004 5.14286
241 1OFH ADP 0.000201 0.46388 5.16129
242 5HPY GDP 0.00000007189 0.62767 5.17241
243 2B8W ALF 5GP 0.0005159 0.46621 5.18293
244 4ZI2 GNP 0.0000000009247 0.72307 5.18518
245 4YLG GDP 0.000000002885 0.68991 5.20231
246 4CVN ADP 0.00001203 0.56359 5.2356
247 1XX6 ADP 0.0006536 0.42377 5.2356
248 5XCO GDP 0.000000006799 0.66948 5.26316
249 3RLF ANP 0.0006573 0.40801 5.26316
250 3EZ2 ADP 0.0001614 0.49995 5.28967
251 1RRC ADP 0.00001103 0.44663 5.31561
252 5O2T GSP 0.00000001634 0.54197 5.32544
253 3CNL GNP 0.0000000007814 0.75957 5.34351
254 1YRB GDP 0.000000003913 0.6801 5.34351
255 1GUA GNP 0.00000003664 0.53031 5.38922
256 1VG1 GDP 0.0000000004368 0.6903 5.40541
257 1VG9 GDP 0.0000000008231 0.6793 5.40541
258 1E96 GTP 0.0000001377 0.52081 5.41872
259 1RE0 GDP 0.00000000007237 0.68781 5.42986
260 1Y63 ADP 0.00001821 0.53846 5.43478
261 1G4U GDP 0.0000001599 0.57848 5.48303
262 4BAS GNP 0.000000013 0.67098 5.52764
263 5M7P ADP 0.000263 0.47121 5.54156
264 1W7J ADP BEF 0.0003902 0.44879 5.54156
265 1NJF AGS 0.0001191 0.49122 5.6
266 1NJF ADP 0.0001037 0.48933 5.6
267 3E5H GNP 0.0000001124 0.63678 5.61798
268 1QF9 ADP 0.001947 0.45553 5.6701
269 1QF9 ALF 0.001947 0.45553 5.6701
270 1QF9 C5P 0.001947 0.45553 5.6701
271 2EW1 GNP 0.00000002628 0.66015 5.79345
272 2GJ8 ALF GDP 0.000000002363 0.56879 5.81395
273 5G41 AP5 0.002464 0.45919 5.8296
274 5WDR GNP 0.00000001818 0.67596 5.84795
275 5SZH GNP 0.00000002014 0.6739 5.88235
276 1KAO GDP 0.00000001239 0.6617 5.98802
277 2QEN ADP 0.00006849 0.49489 6
278 1JWY GDP 0.0000001549 0.60938 6.04534
279 1JWY ADP 0.000114 0.49415 6.04534
280 3FWY ADP 0.000002997 0.55546 6.05096
281 3E70 GDP 0.000004134 0.52942 6.09756
282 2QTV GNP 0.00000008645 0.63935 6.12245
283 3Q9L ATP 0.00019 0.46322 6.15385
284 4KAX GTP 0.000000004379 0.69242 6.21118
285 1OXV ANP 0.00006543 0.45447 6.23229
286 2OFW ADX 0.0005707 0.48361 6.25
287 1ZD9 GDP 0.000000026 0.61117 6.29723
288 2NCD ADP 0.000003879 0.59567 6.29723
289 1P9B GDP 0.00006909 0.48481 6.29723
290 1P9B HDA 0.01069 0.41821 6.29723
291 4MKF AP5 0.001347 0.46788 6.45161
292 1J99 AND 0.02033 0.40323 6.48464
293 4V0K GDP 0.000000006676 0.58005 6.50888
294 1NN5 ANP 0.000302 0.48719 6.51163
295 4TTQ ATP 0.000115 0.46183 6.51163
296 3DKP ADP 0.0002786 0.44352 6.53061
297 3ZIA ADP 0.00004265 0.50135 6.55738
298 3ZIA ATP 0.00002116 0.49559 6.55738
299 1F6B GDP 0.000000001047 0.67791 6.56566
300 3IO3 ADP 0.00007623 0.49533 6.6092
301 3QXC ATP 0.00009062 0.42035 6.61157
302 5L3R GCP 0.000004643 0.48299 6.64452
303 5H56 ADP 0.000381 0.48089 6.66667
304 5H56 TYD 0.000381 0.48089 6.66667
305 4WOP CTP 0.00132 0.44183 6.66667
306 3FVQ ATP 0.0007933 0.41954 6.68524
307 2B8T THM 0.007683 0.40903 6.72646
308 2WOJ ADP ALF 0.00005603 0.51444 6.77966
309 4XVU ATP 0.0001112 0.49471 6.77966
310 3ZS9 ADP ALF 0.00005033 0.42934 6.77966
311 1OS1 ATP 0.0005949 0.47024 6.80101
312 1OS1 PYR 0.0006425 0.47024 6.80101
313 3TBK ANP 0.001174 0.40763 6.80101
314 3CX8 GSP 0.000000006022 0.54037 6.89655
315 3BFV ADP 0.000006584 0.55948 7.01107
316 5EE5 GTP 0.00000002066 0.66185 7.01754
317 1Z08 GNP 0.00000004653 0.56162 7.05882
318 1M7G ADX 0.0001543 0.50093 7.109
319 1M7G AV2 0.000005849 0.49968 7.109
320 1M7G ADP 0.0002923 0.48465 7.109
321 2A9K GDP 0.00000001173 0.66276 7.17489
322 2PEZ GGZ 0.0003136 0.48794 7.26257
323 2PEZ DAT 0.0003136 0.48794 7.26257
324 1R4A GNP 0.00000000598 0.69254 7.27273
325 4IDN GNP 0.0002511 0.43096 7.30479
326 5L3V GDP 0.00000178 0.55315 7.35786
327 4U00 ADP 0.000006764 0.44116 7.37705
328 4XOI GTP 0.0000002749 0.61631 7.40741
329 3H4S ADP 0.0000008015 0.48512 7.40741
330 1JI0 ATP 0.00003913 0.5379 7.5
331 2FH5 GTP 0.000000008832 0.61495 7.56757
332 3COB ADP 0.0000005437 0.48999 7.58808
333 4QM7 GTP 0.00016 0.45075 7.60234
334 4GOX A3P 0.0001584 0.43228 7.66773
335 1B7T ADP 0.0002072 0.47638 7.69231
336 2A5F GTP 0.000000004293 0.69914 7.77202
337 2W83 GTP 0.00000000747 0.58936 7.79221
338 5IRR GSP 0.000002314 0.51212 7.79221
339 2OG2 MLI 0.0000281 0.57472 7.79944
340 1W0J ADP 0.00002351 0.51281 7.80856
341 1W0J ADP BEF 0.0005785 0.45585 7.80856
342 1NF3 GNP 0.0000001454 0.63163 7.8125
343 1YZG GDP 0.0000000001098 0.7168 7.82123
344 4OI4 ATP 0.0005003 0.41198 7.82609
345 1A4R GNH 0.00000002595 0.64739 7.8534
346 1A4R GDP 0.00000003462 0.64525 7.8534
347 2NGR GDP 0.00000001102 0.63144 7.8534
348 4ITR GDP 0.00000007229 0.63091 7.8534
349 1GRN GDP 0.00000006609 0.60859 7.8534
350 1S8F GDP 0.00000001118 0.6884 7.9096
351 1UJ2 ADP 0.000255 0.48397 7.93651
352 1UJ2 C5P 0.000405 0.47466 7.93651
353 1ZC3 GNP 0.000000009792 0.6884 7.9646
354 5N69 ADP 0.0002432 0.46788 8.0402
355 2GK6 ADP 0.001769 0.45482 8.06045
356 4A4Z ANP 0.001586 0.4461 8.06045
357 3T1O GDP 0.0000000006478 0.70023 8.08081
358 3T12 GDP ALF 0.000000003354 0.61653 8.08081
359 1T8U A3P 0.006136 0.41168 8.08823
360 1T8U UAP SGN IDS SGN 0.0201 0.40973 8.08823
361 4XTR ATP 0.00008993 0.49892 8.10811
362 4XTR ADP 0.00007157 0.49656 8.10811
363 1CXZ GSP 0.00000008028 0.63511 8.13953
364 4LPS GDP 0.00000006925 0.64348 8.26446
365 4HI0 GDP 0.0000001587 0.56913 8.26772
366 2CE7 ADP 0.0001065 0.47484 8.31234
367 5HR5 ADP 0.0002747 0.46801 8.31234
368 4GOJ GNP 0.0000000006451 0.73016 8.33333
369 1TAD GDP 0.000000007774 0.69835 8.33333
370 1TAD ALF 0.000000007774 0.69835 8.33333
371 3ZQ6 ADP ALF 0.00002511 0.53058 8.33333
372 3FB4 AP5 0.001906 0.45945 8.33333
373 1BO4 COA 0.006002 0.41854 8.33333
374 3X1Z GNP 0.00000003186 0.66726 8.38323
375 4HDQ GNP 0.00000006401 0.65065 8.38323
376 4HDO GNP 0.00000004118 0.52922 8.38323
377 1B0U ATP 0.0009439 0.44179 8.39695
378 1ZJ6 G3D 0.00000000009997 0.77535 8.55615
379 1KK8 BEF ADP 0.0003604 0.45037 8.63309
380 2C5L GTP 0.00000001605 0.67846 8.67052
381 4K81 GTP 0.00000005362 0.65674 8.77193
382 1MKY GDP 0.000000000002935 0.75746 8.81612
383 1TU3 GNP 0.000000008386 0.68872 8.86076
384 1PUJ GNP 0.0000000002364 0.73407 8.86525
385 5E95 GDP 0.00000001299 0.63938 8.92857
386 2J59 GTP 0.000000006583 0.59065 8.92857
387 1Z2A GDP 0.00000002686 0.56988 8.92857
388 1ZUI SKM 0.0009627 0.46895 8.92857
389 1LFD GNP 0.00000001808 0.67335 8.98204
390 1CLU DBG 0.00000005643 0.68219 9.03614
391 2UZI GTP 0.00000001689 0.6747 9.03614
392 1NVV GNP 0.00000003171 0.66477 9.03614
393 1NVU GTP 0.00000003339 0.66374 9.03614
394 3KUD GDP 0.00000001089 0.6087 9.03614
395 1WQ1 GDP 0.00000004835 0.55919 9.03614
396 1WQ1 AF3 0.02967 0.40036 9.03614
397 4DCT GDP 0.00000000005274 0.78825 9.06801
398 2IYL GDP 0.000003519 0.57243 9.15493
399 3TNF GNP 0.00000002474 0.67236 9.1954
400 3QBT GNP 0.0000000117 0.55697 9.1954
401 4PX9 ADP 0.0001016 0.4493 9.24658
402 3B9Q MLI 0.00003782 0.55746 9.27152
403 2OZE AGS 0.000328 0.4669 9.39597
404 2C04 GCP 0.00004659 0.49053 9.42761
405 5KUT GDP 0.00000001367 0.6278 9.52381
406 1OE0 TTP 0.008846 0.41258 9.56522
407 2EFE GNH 0.0000000166 0.65231 9.73783
408 3AB3 GDP 0.000000003538 0.69323 9.7561
409 2Q2Y ADP 0.0004119 0.49167 9.80926
410 2Q2Y MKR 0.000407 0.4907 9.80926
411 2XTN GTP 0.000005745 0.48715 9.82906
412 3KJI ADP 0.00005303 0.49716 9.84252
413 5MVR ADP 0.00001174 0.49655 9.87654
414 2J0V GDP 0.00000002186 0.62026 9.90566
415 2KIN ADP 0.0000001385 0.49034 10
416 2RCN GDP 0.0000000005285 0.67057 10.0559
417 1X1R GDP 0.00000004073 0.65974 10.0756
418 4R43 GDP 0.00004286 0.52076 10.0756
419 3VX3 ADP 0.0001587 0.45856 10.0806
420 1NRJ GTP 0.0000005441 0.59456 10.0917
421 2CBZ ATP 0.0000009155 0.64449 10.1266
422 3Q72 GNP 0.000000000123 0.67548 10.241
423 1SVI GDP 0.0000000009131 0.64682 10.2564
424 3B5J 12D 0.00008418 0.5212 10.2881
425 5TSH ANP 0.00004165 0.47376 10.3275
426 5TSH ADP 0.00006572 0.43954 10.3275
427 4KFU ACP 0.000005473 0.47661 10.3774
428 4YMU ATP 0.0001094 0.4468 10.4167
429 4R2I ANP 0.001334 0.4102 10.4762
430 2W2X GSP 0.00000003721 0.64713 10.4839
431 3RWO GDP 0.000000005338 0.69776 10.8108
432 5KDO GDP 0.00000001074 0.61226 10.8108
433 2CJW GDP 0.0000000002189 0.77264 10.9375
434 1GOT GDP 0.000000009217 0.67776 10.9589
435 2DPY ADP 0.0001074 0.51589 11.0831
436 3ZFD ANP 0.0000558 0.48729 11.396
437 3H86 AP5 0.000791 0.4717 11.4583
438 4GDX GLU 0.007785 0.42899 11.4973
439 1F9V ADP 0.000004298 0.47862 11.5274
440 1Z0J GTP 0.00000002129 0.5388 11.8644
441 5DI3 GNP 0.000000001568 0.62777 11.8919
442 4MKG AP5 0.001316 0.46724 11.9816
443 5L3W GDP 0.00001259 0.51663 12.0915
444 2X77 GDP 0.000000006421 0.69143 12.1693
445 4R98 GNH 0.000000000808 0.66748 12.1771
446 1FQK GDP 0.00000001199 0.58487 12.2449
447 4GBM A3P 0.001113 0.40155 12.3839
448 5L3S GNP 0.000007772 0.54976 12.5
449 5JCZ GDP 0.00000001609 0.61778 12.8492
450 4LX0 BEF GDP 0.00000001435 0.68072 12.9944
451 3RAB GNP 0.000000003801 0.70455 13.0178
452 2WIC GNP 0.0000000008056 0.73328 13.1086
453 4C4P GNP 0.00000001072 0.68658 13.2948
454 1S9D GDP 0.0000000003439 0.75044 13.3005
455 1HE1 GDP 0.00000008544 0.57516 13.3333
456 1HE1 AF3 0.02482 0.40091 13.3333
457 1WDT GTP 0.000000176 0.57755 13.3501
458 2HT6 GDP 0.00000000002267 0.70405 13.7931
459 1DS6 GDP 0.000000003943 0.63476 13.8889
460 3DDC GNP 0.00000004099 0.52873 14.1104
461 1OIV GDP 0.000000006737 0.6931 14.1361
462 1FQJ GDP 0.000000005739 0.59476 14.2857
463 1FQJ ALF 0.02224 0.403 14.2857
464 2BCG GDP 0.00000001155 0.62462 14.3577
465 3BER AMP 0.01211 0.40397 14.4578
466 1OIX GDP 0.00000001133 0.68269 14.6597
467 2D7D ADP 0.001626 0.4132 15
468 3KTA AP5 0.0004218 0.45729 15.6069
469 1HTW ADP 0.00002068 0.49712 15.8228
470 4TMZ GSP 0.000000002265 0.60867 15.942
471 5J1J ANP 0.00001428 0.53538 16.1404
472 3WYF GTP 0.000000101 0.64396 16.4384
473 3M1I GTP 0.00000009319 0.6431 16.4384
474 4KVG GTP 0.00000001697 0.67461 16.9231
475 3EC1 GDP 0.0000000008742 0.67909 17.0732
476 1WF3 GNP 0.000000002511 0.71576 17.608
477 2HV8 GTP 0.00000001371 0.67888 18.0233
478 5UFQ GNP 0.00000001053 0.68417 18.0328
479 3A1S GDP 0.00000006392 0.6451 18.2171
480 2D7C GTP 0.00000001134 0.68268 18.5629
481 4ZKD GDP 0.0000000006948 0.74159 19.1436
482 1GP2 GDP 0.000000008694 0.58977 19.7183
483 3WYG GTP 0.0000001051 0.51045 19.7802
484 1KY3 GDP 0.0000000109 0.6604 20.3297
485 1WA5 GTP 0.00000009186 0.48646 20.4545
486 3GJ0 GDP 0.0000000008676 0.74417 21.267
487 1MR3 G3D 0.000000001246 0.67362 21.547
488 5BXQ GDP 0.000000001452 0.66999 21.7593
489 3CH5 GDP 0.000000001486 0.66955 21.7593
490 3GJX GTP 0.0000001562 0.63271 21.7593
491 1IBR GNP 0.00000009109 0.52133 21.7593
492 3BC1 GNP 0.0000000118 0.68188 22.0339
493 1D2N ANP 0.002351 0.40293 22.0588
494 2OM2 GDP 0.000000005149 0.62502 22.2222
495 3DOE GTP 0.0000000005701 0.73604 22.3958
496 1KSH GDP 0.0000000004778 0.73246 22.5806
497 2BME GNP 0.00000001452 0.67773 24.1935
498 2WJG GDP 0.000000000009401 0.83771 25.5319
499 2WJH GDP 0.0000000002078 0.70444 28.9157
500 2WJH FLC 0.0000005009 0.57667 28.9157
501 1Z0K GTP 0.00000001226 0.58124 29.6512
502 3Q85 GNP 0.00000000003319 0.71601 30.7692
503 1I4D GDP 0.000000003731 0.72641 31.6964
504 3W5J GDP 0.0000002316 0.66252 35.2941
505 2V7Q ATP 0.00001895 0.52345 36
506 2V7Q ADP 0.0001826 0.4908 36
507 2CK3 ANP 0.0006763 0.43053 36
508 2CK3 ADP 0.0007803 0.40576 36
509 3MJH GTP 0.000000006713 0.56481 38.2353
Pocket No.: 3; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1d2e.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1d2e.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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