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Receptor
PDB id Resolution Class Description Source Keywords
1D7Y 2.1 Å EC: 1.18.1.2 CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BP PSEUDOMONAS SP. FLAVOPROTEIN ROSSMANN FOLD OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDU COMPONENT IN BIPHENYL DIOXYGENASE. J.MOL.BIOL. V. 304 397 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FAD A:449;
Valid;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2YVF 1.6 Å EC: 1.18.1.2 CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE BPHA4 (HYDROQUINON PSEUDOMONAS SP. FLAVOPROTEIN OXIDOREDUCTASE
Ref.: MOLECULAR MECHANISM OF THE REDOX-DEPENDENT INTERACT BETWEEN NADH-DEPENDENT FERREDOXIN REDUCTASE AND RIE [2FE-2S] FERREDOXIN J.MOL.BIOL. V. 373 382 2007
Members (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 25 families.
1 1F3P - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1D7Y - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 2GQW - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 2YVF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 2GR0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
6 2YVG - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1F3P - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1D7Y - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 2GQW - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 2YVF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 2GR0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
6 2YVG - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 1Q1R - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3FG2 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 3EF6 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 4EMI Kd = 41 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 3LXD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
6 1F3P - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 1D7Y - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
8 2GQW - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
9 2YVF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 2GR0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
11 2YVG - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2YVF; Ligand: FAD; Similar sites found with APoc: 960
This union binding pocket(no: 1) in the query (biounit: 2yvf.bio1) has 59 residues
No: Leader PDB Ligand Sequence Similarity
1 5A1T NAI 1.17302
2 5A1T OXM 1.17302
3 5DNK SAH 1.22549
4 2IXB NAD 1.22549
5 2IXB A2G 1.22549
6 4BJZ FAD 1.22549
7 4BJZ P3A 1.22549
8 1Q0H FOM 1.23153
9 5OCM NAP 1.37457
10 1KGZ PRP 1.44928
11 1PJS NAD 1.47059
12 1ZGS XMM 1.47059
13 5JAQ NAI 1.47783
14 4IDC 1XX 1.50602
15 4IDC NDP 1.50602
16 1PZG A3D 1.51057
17 4CNK FAD 1.53453
18 4XYB NDP 1.53453
19 1A5Z NAD 1.5674
20 1EZ4 NAD 1.57233
21 1TB4 PEJ 1.61725
22 1HKU NAD 1.67598
23 3H8V ATP 1.71233
24 2GVC FAD 1.71569
25 1VQW FAD 1.71569
26 2GV8 FAD 1.71569
27 1MUU NAD 1.71569
28 2GV8 NDP 1.71569
29 3T3Z 9PL 1.71569
30 3K5I AIR 1.71569
31 3PT9 SAH 1.71569
32 3WQQ IB3 1.71569
33 3WQQ NDP 1.71569
34 4EDF UPG 1.71569
35 4KRG SAH 1.71569
36 4KP7 1UQ 1.71569
37 4KP7 NAP 1.71569
38 3K5I ADP 1.71569
39 5X62 SAH 1.72414
40 5AOV NAP 1.78571
41 4PLT NAI 1.81269
42 4PLT OXM 1.81269
43 5KVS NAP 1.81818
44 5KVS 6XR 1.81818
45 2O4C NAD 1.84211
46 4DCM SAM 1.86667
47 1I36 NAP 1.89394
48 4LWP SAH 1.90217
49 1GR0 NAD 1.90736
50 3ABI NAD 1.91781
51 4JK3 NAD 1.9305
52 4J4H 1J1 1.9305
53 4J4H NAI 1.9305
54 3VYW SAM 1.94805
55 1MV8 NAD 1.96078
56 5HSA FAS 1.96078
57 1FUR MLT 1.96078
58 1PN0 IPH 1.96078
59 1PN0 FAD 1.96078
60 4J1Q NDP 1.96078
61 1O6Z NAD 1.9802
62 1WPQ NAD 2.00573
63 3TWO NDP 2.01149
64 6DNT NAD 2.03488
65 6GNC FAD 2.04082
66 3U31 NAD 2.06897
67 3BMO AX4 2.08333
68 3JQ8 DX3 2.08333
69 3JQG AX6 2.08333
70 3BMQ AX5 2.08333
71 3JQA NAP 2.08333
72 5JDC NAP 2.08333
73 5JDI NAP 2.08333
74 4CM4 NAP 2.08333
75 5K6A NAP 2.08333
76 4CLR NAP 2.08333
77 3BMO NAP 2.08333
78 3BMQ NAP 2.08333
79 3JQG NAP 2.08333
80 3JQ7 NAP 2.08333
81 3JQF NAP 2.08333
82 3JQ9 NAP 2.08333
83 4CM8 NAP 2.08333
84 3JQ8 NAP 2.08333
85 5JCJ NAP 2.08333
86 3BMN NAP 2.08333
87 4CMI NAP 2.08333
88 2EJU SAH 2.1164
89 5GZ6 NDP 2.14724
90 5GZ6 7C3 2.14724
91 4JBI NDP 2.16216
92 1OMO NAD 2.17391
93 2PT9 S4M 2.18069
94 2PT9 2MH 2.18069
95 3EVG SAH 2.18182
96 6H3O FAD 2.20588
97 5OC1 FAD 2.20588
98 1GQ2 NAP 2.20588
99 2JHP SAH 2.20588
100 2R68 SUP 2.20588
101 1VKO NAD 2.20588
102 5LD5 NAD 2.23464
103 1DLJ NAI 2.23881
104 1DLJ UGA 2.23881
105 2WD7 NAP 2.23881
106 2B5W NAP 2.2409
107 6DUB SAH 2.25225
108 6FHO FAD 2.25564
109 5KOK SAH 2.267
110 4B4U NAP 2.31023
111 3DMH SAM 2.3622
112 3DMH GMP 2.3622
113 4XDY NAI 2.36686
114 1RM4 NDP 2.37389
115 1E3I CXF 2.39362
116 3MMH SME 2.39521
117 1VL0 NAI 2.39726
118 2EG5 SAH 2.41935
119 1M2W NAD 2.43408
120 1LJ8 NAD 2.43408
121 6BWL NAD 2.43902
122 5Z75 NAD 2.44648
123 5TUF FAD 2.45098
124 3ULK NDP 2.45098
125 5TUF TDC 2.45098
126 4U8P FDA 2.45098
127 4U8P UDP 2.45098
128 2V6G NAP 2.47253
129 2I7C AAT 2.4735
130 3GDH SAH 2.48963
131 1VBJ CIT 2.4911
132 1F3L SAH 2.49221
133 3C1O NAP 2.49221
134 3CIF NAD 2.50696
135 3CIF G3H 2.50696
136 1K3T BRZ 2.50696
137 3DAG FEG 2.51397
138 3WMX NAD 2.51397
139 1PL6 NAD 2.52809
140 1PL6 572 2.52809
141 4DMG SAM 2.54453
142 1U1I NAD 2.55102
143 5X68 FAD 2.55754
144 2YY7 NAD 2.5641
145 1GV0 NAD 2.58065
146 1GUZ NAD 2.58065
147 1EQ2 NAP 2.58065
148 3FUU ADN 2.58303
149 2EUG URA 2.62009
150 5NM7 GLY 2.63158
151 2O07 MTA 2.63158
152 2O07 SPD 2.63158
153 5Z2F NAP 2.64151
154 5G48 1FL 2.6738
155 3TLJ SAH 2.68097
156 6FDF SAH 2.69461
157 3GMB FAD 2.69608
158 4HA6 FAD 2.69608
159 4J36 FAD 2.69608
160 3L9W GSH 2.69608
161 3L9W AMP 2.69608
162 3QVP FAD 2.69608
163 5EB4 FAD 2.69608
164 4RSL FAD 2.69608
165 5Y8L NAD 2.69608
166 5Y8L HUI 2.69608
167 4J36 1HR 2.69608
168 5MBX FAD 2.69608
169 5MBX SP5 2.69608
170 2DBZ NAP 2.69608
171 4KRI SAH 2.69608
172 4RQL SNE 2.69608
173 5JJR SAH 2.69608
174 2XKO AKG 2.7027
175 2C2A ADP 2.71318
176 3NKS FAD 2.72537
177 3QF7 ANP 2.73973
178 3FPZ AHZ 2.76074
179 3VSE SAH 2.76382
180 1GY8 NAD 2.77078
181 2D5A COA 2.77778
182 5UAV NDP 2.79503
183 5UAV TFB 2.79503
184 5G4L NDP 2.7972
185 1BW9 NAD 2.80899
186 1BXG NAD 2.80899
187 1C1X NAD 2.8169
188 4CJX NAP 2.82132
189 1JAY NAP 2.83019
190 3GEG NAD 2.83401
191 1YKF NAP 2.84091
192 2DT5 NAD 2.8436
193 3C6K SPD 2.88714
194 3C6K MTA 2.88714
195 2D2I NAP 2.89474
196 1WY7 SAH 2.89855
197 5HXI 5HN 2.90237
198 5HXI FAD 2.90237
199 2HK9 ATR 2.90909
200 2HK9 NAP 2.90909
201 3EGI ADP 2.91262
202 3N9R TD3 2.9316
203 4FWE FAD 2.94118
204 5BVA FAD 2.94118
205 1V8B NAD 2.94118
206 2B9W FAD 2.94118
207 1P31 EPU 2.94118
208 1U8X NAD 2.94118
209 2AEL SAZ 2.94118
210 1E5Q NDP 2.94118
211 1D1G NDP 2.97619
212 1W6U NAP 2.98013
213 4MDH NAD 2.99401
214 5BW4 SAM 2.99625
215 1VI2 NAD 3
216 4POO SAM 3
217 5MDH NAD 3.003
218 5LOG SAH 3.00429
219 6A0S NDP 3.01205
220 6A0S HSE 3.01205
221 2GLX NDP 3.01205
222 1SOW NAD 3.04878
223 5Z21 NAI 3.07263
224 3BGD SAH 3.07692
225 4R6W SAH 3.10078
226 2JBH 5GP 3.11111
227 2CVZ NDP 3.11419
228 1NPD NAD 3.125
229 4TSK NDP 3.14286
230 2NXE SAM 3.14961
231 1EJH M7G 3.15789
232 5TC4 NAD 3.16456
233 4MIG G3F 3.18627
234 5MZI FAD 3.18627
235 5MZI FYK 3.18627
236 4XQC NAD 3.18627
237 5Y77 FAD 3.18627
238 4XQC 13D 3.18627
239 1GPE FAD 3.18627
240 5M67 ADE 3.18627
241 5M67 NAD 3.18627
242 6D6Y SAH 3.18627
243 2JJQ SAH 3.18627
244 5M67 3D1 3.18627
245 4JJF FE9 3.19767
246 4JJF N2I 3.19767
247 2YYY NAP 3.207
248 4XDZ NDP 3.207
249 1G55 SAH 3.207
250 3DXY SAM 3.21101
251 1Y1P NMN AMP PO4 3.21637
252 3JWH SAH 3.22581
253 4REP FAD 3.23232
254 3B20 NAD 3.24484
255 3B1J NAD 3.24484
256 1IZC PYR 3.24484
257 3NGL NAP 3.26087
258 2GZ3 NAP 3.27869
259 2Q1W NAD 3.3033
260 1N2X SAM 3.32226
261 4FZV SAM 3.34728
262 5D4V SAH 3.35821
263 5ULP KB1 3.35821
264 1JQ3 AAT 3.37838
265 4NTO 1PW 3.38164
266 4BGB ADP 3.38462
267 3LKZ SFG 3.42679
268 5K4W NAI 3.42679
269 5K4W THR 3.42679
270 4EIP FAD 3.43137
271 4EIP K2C 3.43137
272 4YNU FAD 3.43137
273 4YNU LGC 3.43137
274 4C4A SAH 3.43137
275 4EUE NAI 3.43137
276 5E4R NAP 3.43137
277 4HXY NDP 3.43137
278 3RKR NAP 3.43511
279 5DX1 SFG 3.4384
280 5DX8 SFG 3.4384
281 5DXA SFG 3.4384
282 5DX0 SFG 3.4384
283 5DWQ SFG 3.4384
284 2BZG SAH 3.44828
285 3WGT FAD 3.45821
286 3WGT QSC 3.45821
287 3ZNN 4WL 3.45821
288 3ZNN FAD 3.45821
289 4RQU NAD 3.46667
290 6GNA FAD 3.47222
291 4I9A NCN 3.47222
292 5Z20 NAI 3.47826
293 3ESS 18N 3.47826
294 1LUA NAP 3.48432
295 1NVT NAP 3.48432
296 1Q9I TEO 3.50263
297 1Q9I FAD 3.50263
298 3WGC PLG 3.51906
299 1NV8 MEQ 3.52113
300 1NV8 SAM 3.52113
301 5N5D SAM 3.53982
302 4BVA NDP 3.58209
303 4BVA T3 3.58209
304 5YF1 SFG 3.59116
305 4KOA NDP 3.6036
306 1J49 NAD 3.6036
307 3BAZ NAP 3.6036
308 1VDC FAD 3.6036
309 1HDG NAD 3.61446
310 5A96 GTP 3.61446
311 1EBF NAD 3.63128
312 4E5N NAD 3.63636
313 4KIB SAH 3.64146
314 5JE8 NAD 3.64238
315 2HJR APR 3.65854
316 5TUK FAD 3.67647
317 4B63 NAP 3.67647
318 4B63 ORN 3.67647
319 4B63 FAD 3.67647
320 5ZYN FAD 3.67647
321 6F97 FAD 3.67647
322 4D04 NAP 3.67647
323 4D04 FAD 3.67647
324 5WP5 SAH 3.67647
325 2HHP FLC 3.67647
326 4AT0 FAD 3.67647
327 4DSG FAD 3.67647
328 4DSG UDP 3.67647
329 2IZ1 ATR 3.67647
330 4A0S NAP 3.67647
331 3G2O SAM 3.67893
332 5YAP NAI 3.68421
333 5YAP 8S0 3.68421
334 5T9E NAP 3.69004
335 5T9F NAP 3.69004
336 5T9F TYR 3.69004
337 2PV7 NAD 3.69128
338 5EOW FAD 3.7037
339 1SC6 NAD 3.71287
340 1UAY ADN 3.71901
341 3GRU AMP 3.72881
342 2A92 NAI 3.73832
343 4YCA NDP 3.7415
344 4W6Z 8ID 3.7464
345 2FZW NAD 3.75335
346 5E72 SAM 3.75723
347 5XNC MTA 3.77358
348 2R4J FAD 3.79242
349 2R4J 13P 3.79242
350 3WLE NAD 3.81232
351 3ITJ FAD 3.84615
352 5ZI9 FLC 3.84615
353 3ITJ CIT 3.84615
354 5E9W SAH 3.84615
355 5TTJ FAD 3.87755
356 6CEP NAD 3.89222
357 6CEP OXM 3.89222
358 4PLG OXM 3.89222
359 4PLG NAI 3.89222
360 3MAG SAH 3.90879
361 9LDT NAD 3.91566
362 9LDB NAD 3.91566
363 4K5S FAD 3.92157
364 1REO FAD 3.92157
365 2JB2 FAD 3.92157
366 2E5V FAD 3.92157
367 2JB2 PHE 3.92157
368 5TS5 FAD 3.92157
369 4K5S PM0 3.92157
370 1O0S NAI 3.92157
371 5YB7 FAD 3.92157
372 5YB7 ORN 3.92157
373 6A3J NAI 3.92157
374 1UP7 NAD 3.92157
375 3SSO SAH 3.92157
376 6A3J SOE 3.92157
377 1Z45 NAD 3.92157
378 4DPL NAP 3.92157
379 2VYN NAD 3.92749
380 1GAD NAD 3.93939
381 1LDM NAD 3.95137
382 5BSH PRO 3.97112
383 5HJM MTA 3.97727
384 3A06 NDP 3.98936
385 3A06 FOM 3.98936
386 4YT4 FE9 4
387 4O0L NDP 4
388 3P2E SAH 4
389 5UR0 NAD 4.01146
390 5OJL TXP 4.02685
391 3MCT SAH 4.0404
392 1EYQ NAR 4.05405
393 4MO2 FDA 4.07609
394 4MO2 FAD 4.07609
395 1IM8 SAI 4.09836
396 3GF4 FAD 4.10256
397 3GF4 UPG 4.10256
398 2NU8 COA 4.12371
399 1RJW ETF 4.12979
400 1YUM NCN 4.13223
401 4UP3 FAD 4.14013
402 4UP3 NDP 4.14013
403 5VKT NAP 4.14365
404 3V1Y NAD 4.1543
405 4USQ FAD 4.15512
406 3X0V FAD 4.16667
407 4KVL PLM 4.16667
408 3UOY FAD 4.16667
409 3UOY NAP 4.16667
410 5ERG SAM 4.16667
411 3X0D SAH 4.16667
412 5X20 NAD 4.16667
413 4C3Y FAD 4.16667
414 4C3Y ANB 4.16667
415 4ZRN NAD 4.16667
416 5MSD AMP 4.16667
417 3O9Z AKG 4.16667
418 4AZW SAM 4.16667
419 3O9Z NAD 4.16667
420 4XB2 NDP 4.1791
421 4XB2 HSE 4.1791
422 4Z0H NAD 4.19162
423 1J0X NAD 4.21687
424 3C3Y SAH 4.21941
425 1B8U NAD 4.25532
426 4R5M NAP 4.25532
427 1B8U OAA 4.25532
428 4R5M 4NO 4.25532
429 2Y6Q FAD 4.27136
430 2Y6Q I7T 4.27136
431 1U3U NAD 4.27807
432 1U3U BNF 4.27807
433 5MIT NAP 4.28135
434 5MIT FAD 4.28135
435 1D1T NAD 4.28954
436 4PNE SAH 4.30464
437 5ZI2 NAD 4.34783
438 5ZI2 ADP 4.34783
439 1I8T FAD 4.35967
440 1HSR BHO 4.36047
441 1DRV A3D 4.3956
442 4ZGS NAD 4.40415
443 2DKH FAD 4.41176
444 2GMH FAD 4.41176
445 5NMX FAD 4.41176
446 2DKH 3HB 4.41176
447 1H82 FAD 4.41176
448 5NMX NAP 4.41176
449 1H82 GZZ 4.41176
450 1EJ0 SAM 4.44444
451 2VDV SAM 4.47154
452 3KB6 NAD 4.49102
453 1HDR NAD 4.5082
454 5E5U MLI 4.52261
455 5E5U MLT 4.52261
456 3OZ2 FAD 4.53401
457 3HDY FAD 4.53401
458 3HDY FDA 4.53401
459 3HDY GDU 4.53401
460 1ZQ9 SAM 4.5614
461 1RP0 AHZ 4.57746
462 2NAD NAD 4.58015
463 2RGO FAD 4.61285
464 1WDK NAD 4.61538
465 1YJQ NAP 4.62046
466 2J5V PCA 4.63215
467 6AA8 NAD 4.63576
468 5BJX UDP 4.64481
469 5BJX NAD 4.64481
470 2VT3 ATP 4.65116
471 5YU3 NAD 4.65116
472 5YU3 PRO 4.65116
473 3OJO NAD 4.65686
474 1GTE FAD 4.65686
475 6F7L FAD 4.65686
476 1KNR FAD 4.65686
477 2XVF FAD 4.65686
478 2WET FAD 4.65686
479 6ER9 NAP 4.65686
480 6ER9 FAD 4.65686
481 3UCL FAD 4.65686
482 3UCL CYH 4.65686
483 6C4M NAP 4.65686
484 3UCL NAP 4.65686
485 1GZ4 ATP 4.65686
486 2XVE FAD 4.65686
487 3NJ4 NAD 4.65686
488 5WP4 SAH 4.65686
489 2FR1 NDP 4.65686
490 1DJN ADP 4.65686
491 3S1S SAH 4.65686
492 2RI1 GLP 4.68085
493 3Q3C NAD 4.68227
494 1GZ6 NAI 4.70219
495 2RGJ FAD 4.72637
496 1H2B NAJ 4.73538
497 5N2I NAP 4.74138
498 3L4S NAD 4.7619
499 3L4S 3PG 4.7619
500 6AIN FAD 4.78469
501 1BXK NAD 4.78873
502 6BII NAP 4.8048
503 4L8F MTX 4.80769
504 5FJN FAD 4.82456
505 5FJN BE2 4.82456
506 5EZ7 FAD 4.84694
507 4RDH AMP 4.86111
508 4RDI ATP 4.86111
509 3RFV 15L 4.86891
510 3RFV NAI 4.86891
511 3QV1 NAD 4.87805
512 5BUK FAD 4.90196
513 4X9M FAD 4.90196
514 6C4N NAP 4.90196
515 5GSN NAP 4.90196
516 5GSN FAD 4.90196
517 6C4T NA7 4.90196
518 5GSN MMZ 4.90196
519 3K7M FAD 4.90196
520 5XVH NAP 4.90196
521 6F3M NAD 4.90196
522 2AQJ TRP 4.90196
523 2AQJ FAD 4.90196
524 2RGH FAD 4.90368
525 3WBF API 4.91803
526 3WBF NAP 4.91803
527 1O94 ADP 4.92424
528 5YRG BGC GLC 4.92958
529 3GU3 SAH 4.92958
530 1F8G NAD 4.94792
531 1NM5 NAD 4.94792
532 1L7E NAI 4.94792
533 1C0I BE2 4.95868
534 1C0I FAD 4.95868
535 3DUV KDO 4.96183
536 5E1M SAH 4.97925
537 5G6U TRP 4.98084
538 3A25 SAM 4.98339
539 1LSS NAD 5
540 5W3K 9TY 5
541 5W3K NDP 5
542 3OA2 NAD 5.03145
543 5AHO TLA 5.05952
544 1TDF FAD 5.06329
545 1LDN NAD 5.06329
546 1TDF NAP 5.06329
547 1Z82 NDP 5.07463
548 3LCC SAH 5.10638
549 5W7M SAH 5.12821
550 2GAG NAD 5.14706
551 5MQ6 NDP 5.14706
552 2VVL FAD 5.14706
553 3A27 SAM 5.14706
554 1V6A TRE 5.14706
555 2GAG FAD 5.14706
556 2GAG FOA 5.14706
557 2VVM FAD 5.14706
558 5I39 FAD 5.14706
559 4MOP 2H5 5.14706
560 1WP4 NDP 5.19031
561 1NE7 AGP 5.19031
562 1L3I SAH 5.20833
563 2GSD NAD 5.22388
564 1GVF PGH 5.24476
565 5EES NAP 5.26316
566 1LLU NAD 5.26316
567 5GWX SAM 5.28169
568 5GWX SAR 5.28169
569 4MP8 NAD 5.30973
570 4MP8 MLI 5.30973
571 1JNR FAD 5.33333
572 4L8V NAP 5.34125
573 5FUB SAH 5.34125
574 4CQM NAP 5.36398
575 1P9P SAH 5.36398
576 5NA1 FAD 5.39216
577 5EVY FAD 5.39216
578 5X7Q GLC GLC GLC 5.39216
579 5X7Q GLC GLC GLC GLC 5.39216
580 3ETG NDP 5.39216
581 3ETG GLU 5.39216
582 1U2Z SAH 5.39216
583 1ELI PYC 5.39846
584 3GGO ENO 5.41401
585 3GGO NAI 5.41401
586 6ACS CIT 5.42636
587 1X7D NAD 5.42857
588 1X7D ORN 5.42857
589 5CAE COA 5.43131
590 5CAE SIN 5.43131
591 4D79 ATP 5.43478
592 2HNK SAH 5.43933
593 3G5K BB2 5.46448
594 1R37 NAD 5.4755
595 5AYV NAP 5.50162
596 5AYV KPL 5.50162
597 4F8L AES 5.51724
598 1KOL NAD 5.52764
599 2XVM SAH 5.52764
600 1J5P NAD 5.5336
601 1NYT NAP 5.53506
602 3QJ4 FAD 5.55556
603 5EIN NAP 5.55556
604 1DIG NAP 5.55556
605 5F8F SFG 5.57029
606 2QA1 FAD 5.6
607 5YRJ BGC GLC 5.6338
608 5YRL GLC GLC 5.6338
609 5YRM BGC GLC 5.6338
610 2IVD FAD 5.63725
611 5ZBC FAD 5.63725
612 1X87 NAD 5.63725
613 1COY FAD 5.63725
614 4XZ3 COA 5.63725
615 1COY AND 5.63725
616 2YX1 SFG 5.65476
617 1F8F NAD 5.66038
618 4NTC FAD 5.67164
619 4OOE NDP 5.69307
620 4OOE FOM 5.69307
621 2AG8 NAP 5.70342
622 1RYI FAD 5.75916
623 1RYI GOA 5.75916
624 1DCP HBI 5.76923
625 5W7K SAH 5.76923
626 3NYC IAR 5.77428
627 3NYC FAD 5.77428
628 1LC3 NAD 5.78231
629 3VPH NAD 5.80645
630 3VPH OXM 5.80645
631 1KYQ NAD 5.83942
632 1QO8 FAD 5.88235
633 2YG3 FAD 5.88235
634 3RYC GTP 5.88235
635 4JLS 3ZE 5.92105
636 5THY SAH 5.92593
637 1YS4 NAP 5.9322
638 3H5N ATP 5.94901
639 1FWV SGA MAG FUC 5.97015
640 5FA5 MTA 5.99455
641 3GFB NAD 6
642 1CER NAD 6.0423
643 2PXX SAH 6.04651
644 2G5C NAD 6.04982
645 1ORR NAD 6.05187
646 1NVM NAD 6.08974
647 5KVA SAM 6.11511
648 3E1T FAD 6.12745
649 1YY5 FAD 6.12745
650 1RSG FAD 6.12745
651 4D7E FAD 6.12745
652 4OPC PGT 6.12745
653 5J7X FAD 6.12745
654 4OPC FDA 6.12745
655 2IID PHE 6.12745
656 2IID FAD 6.12745
657 1QMG APX 6.12745
658 1UXG FUM 6.14887
659 1UXG NAD 6.14887
660 3LA3 2FT 6.17284
661 2FKA BEF 6.20155
662 3A4T SFG 6.20438
663 4OBW SAM 6.22568
664 4Y9D NAI 6.22951
665 5J60 FAD 6.25
666 4GKV NAD 6.25
667 5X9D 80F 6.25
668 3DUW SAH 6.27803
669 3QWI NAP 6.2963
670 5NUF NAD 6.3253
671 5NUE NAD 6.3253
672 1Y8Q ATP 6.35838
673 3H9E NAD 6.35838
674 5G3U FDA 6.37255
675 5G3U ITW 6.37255
676 5ZW3 SAH 6.37255
677 1AMU AMP 6.37255
678 6H45 QEI 6.37755
679 1XCL SAH 6.38298
680 4GQB 0XU 6.39535
681 2BQP GLC 6.41026
682 3WV8 ATP 6.42202
683 5U5G NAP 6.44068
684 4GUT FAD 6.45161
685 2UYQ SAM 6.45161
686 2EV9 SKM 6.46388
687 2EV9 NAP 6.46388
688 2CUL FAD 6.46552
689 1ONI BEZ 6.52174
690 3B1F NAD 6.55172
691 2HYQ MAN MAN 6.55738
692 2NUO BGC 6.55738
693 2GUE NAG 6.55738
694 2NU5 NAG 6.55738
695 1N1G BCP 6.55738
696 2HYR BGC GLC 6.55738
697 2GUD MAN 6.55738
698 2GUD BMA 6.55738
699 5JWC FAD 6.61765
700 5UAO FAD 6.61765
701 3AYI FAD 6.61765
702 3AYI HCI 6.61765
703 2QRK AMP 6.61765
704 2B4R AES 6.66667
705 2B4R NAD 6.66667
706 5N6C NAD 6.66667
707 4M37 SAH 6.70554
708 4M38 SAH 6.70554
709 2Q3M MLA 6.74847
710 2F1K NAP 6.81004
711 2PK3 A2R 6.85358
712 4Y1B NAP 6.86275
713 4YRY FAD 6.88406
714 4YRY NAD 6.88406
715 2Q1S NAI 6.89655
716 2DFV NAD 6.91643
717 5N0L ILE 6.91824
718 2AHR NAP 6.94981
719 1WVG APR 6.96379
720 1QAN SAH 6.96721
721 1P0F NAP 6.97051
722 2PWY SAH 6.97674
723 1P77 ATR 6.98529
724 5FI3 NAP 7.0028
725 1VM6 NAD 7.01754
726 1HYE NAP 7.02875
727 1R18 SAH 7.04846
728 2ZIF SAM 7.07071
729 3AD8 NAD 7.10784
730 3Q9T FAY 7.10784
731 5KOX FAD 7.10784
732 5KOX RFP 7.10784
733 3AD8 PYC 7.10784
734 3AD8 FAD 7.10784
735 3HAD NAD 7.14286
736 5N53 8NB 7.17949
737 3GCM 5GP 7.31707
738 4TM3 FAD 7.35294
739 5A04 NDP 7.37463
740 5A04 BGC 7.37463
741 2XYQ SAH 7.37705
742 4D3F NAP 7.41935
743 3F8D FAD 7.43034
744 3BXF 13P 7.45098
745 3T7S SAM 7.46269
746 5L95 AMP 7.5
747 1DSS NAD 7.50751
748 2AOT SAH 7.53425
749 1P1C SAH 7.53769
750 6BQ6 TER 7.55287
751 1SAY PYR 7.59804
752 4AP3 NAP 7.59804
753 4AP3 FAD 7.59804
754 3AXB PRO 7.59804
755 3AXB FAD 7.59804
756 2ZJ1 NAD 7.59804
757 2ZJ1 ARJ 7.59804
758 5GT9 NAP 7.60456
759 3G89 SAM 7.63052
760 2HMT NAI 7.63889
761 4NTD FAD 7.64706
762 5KKA 6V0 7.69231
763 3LU1 NAD 7.69231
764 1CF2 NAP 7.71513
765 1CDO NAD 7.75401
766 2BRY FAD 7.84314
767 4TXI FAD 7.84314
768 4MCC 21X 7.84314
769 4IV9 FAD 7.84314
770 1UWK URO 7.84314
771 1UWK NAD 7.84314
772 5MPT SAH 7.84314
773 1I9G SAM 7.85714
774 2QZZ NAP 7.86164
775 6EL3 NAP 7.87402
776 5O4J PJL 8.0292
777 5O4J SAH 8.0292
778 5O4J 9KH 8.0292
779 4YAC NAI 8.08081
780 5L4L NAP 8.08823
781 1F06 NDP 8.125
782 1F06 2NP 8.125
783 3HVJ 705 8.1448
784 5ZZ6 ADP 8.17308
785 5ZZ6 NAD 8.17308
786 5HS2 CTP 8.18966
787 4EI7 GDP 8.22622
788 3G5S FAD 8.33333
789 2I3G NAP 8.52273
790 1NW5 SAM 8.77743
791 1GPM CIT 8.82353
792 1C3V NDP 8.97959
793 1YQD NAP 9.01639
794 1HYH NAD 9.06149
795 5H9O OXM 9.09091
796 3T1O GDP 9.09091
797 4JNA FAD 9.11765
798 4IF4 BEF 9.13461
799 1YKJ PHB 9.13706
800 1YKJ FAD 9.13706
801 4YMH SAH 9.16667
802 4XUC 43G 9.17431
803 4XUC SAM 9.17431
804 4ZCC NAI 9.22619
805 4ZCC FAD 9.22619
806 2DC1 NAD 9.32203
807 2CVQ NDP 9.48012
808 5WGR FAD 9.80392
809 5U5N NAD 10.0358
810 4YSX FAD 10.1064
811 5DN9 NAD 10.1648
812 1X14 NAD 10.2244
813 1KJ8 GAR 10.2302
814 1XTP SAI 10.2362
815 5GUD NDP 10.2941
816 5GUD CIT 10.2941
817 3CBG SAH 10.3448
818 2Z3Y F2N 10.5392
819 3OND NAD 10.5392
820 3OND ADN 10.5392
821 5N0J FAD 10.5413
822 1XXR MAN 10.559
823 4KQW NAP 10.5714
824 2Q46 NAP 10.6719
825 4RPL FAD 10.7769
826 4RPL 3UC 10.7769
827 2OOR NAD 10.9195
828 4E13 NAD 10.9541
829 1Q0S SAH 11.1969
830 3IHG FAD 11.2745
831 5BRT FAD 11.2745
832 5BRT CH9 11.2745
833 3QH2 3NM 11.3122
834 2FWP ICR 11.4754
835 2FWP CIT 11.4754
836 4USR FAD 11.6343
837 5ODQ FAD 11.7057
838 2CDC XYS 11.7486
839 2CDC XYP 11.7486
840 2CDC NAP 11.7486
841 3S5W FAD 12.0098
842 2ZXI FAD 12.0098
843 3S5W NAP 12.0098
844 3MB5 SAM 12.1569
845 1LTH NAD 12.2257
846 3GDN FAD 12.2549
847 3GDN HBX 12.2549
848 4II2 ATP 12.2699
849 4EA7 JB2 12.2727
850 4EA7 COA 12.2727
851 1FS5 TLA 12.406
852 2BGM NAJ 12.5899
853 5TQZ GLC 12.6667
854 3ORF NAD 12.749
855 1ZEM NAD 12.9771
856 1NAA 6FA 12.9902
857 1NAA ABL 12.9902
858 4Z24 FAD 13.2353
859 1D4D FAD 13.2353
860 1WG8 SAM 13.6842
861 2VHW NAI 13.7931
862 4OM8 NAD 13.9159
863 1DL5 SAH 14.1956
864 3QFA FAD 14.2157
865 2GCG NDP 14.2424
866 1C3M MAN MAN 14.2857
867 4USI AKG 14.2857
868 1OBB NAD 14.4608
869 1JG3 ADN 14.4681
870 5H81 NAP 15.4412
871 5K0A FAD 15.4545
872 2JKY 5GP 15.493
873 4QTU SAM 16.2963
874 3FPF MTA 16.443
875 3FPF TNA 16.443
876 1PS9 FAD 16.6667
877 1PS9 NAP 16.6667
878 1KEV NDP 16.8091
879 3T31 FAD 17.1569
880 3T31 DCQ 17.1569
881 1ZH8 NAP 17.3529
882 2XWL CTP 17.4888
883 1V59 NAD 17.6471
884 1V59 FAD 17.6471
885 5YEC ATP 17.6471
886 2BOS GLA GAL GLC NBU 17.6471
887 2HQM FAD 18.3824
888 1YQZ FAD 18.3824
889 4J56 FAD 18.8725
890 4YKG FAD 19.6078
891 4YKG NAD 19.6078
892 5NII FAD 19.7411
893 1GET FAD 19.8529
894 1GET NAP 19.8529
895 1BZL FAD 21.0784
896 1BZL GCG 21.0784
897 3CTY FAD 21.3166
898 3CGB FAD 21.5686
899 1LVL NAD 21.5686
900 1LVL FAD 21.5686
901 2WPF FAD 21.5686
902 2WPF WPF 21.5686
903 6FP4 FAD 21.8137
904 6FP4 E1T 21.8137
905 4JDR FAD 22.549
906 3LAD FAD 22.549
907 1FEC FAD 22.549
908 5E8J SAH 22.7273
909 5U8U FAD 22.7941
910 2A8X FAD 22.7941
911 6F5Z SAH 22.9508
912 4M52 FAD 23.0392
913 4M52 M52 23.0392
914 2Q7V FAD 23.0769
915 3OFK SAH 23.1481
916 3CGD NAD 23.5294
917 3CGD FAD 23.5294
918 3CGD COA 23.5294
919 2RAB NAD 23.5294
920 3SQP FAD 23.5294
921 2RAB FAD 23.5294
922 5JCA FAD 23.8397
923 5JCA NDP 23.8397
924 2NVK NAP 24.0196
925 2NVK FAD 24.0196
926 3NT6 FAD 24.7549
927 3NTA FAD 24.7549
928 3ICT ADP 25.2451
929 3ICS ADP 25.2451
930 3ICT FAD 25.2451
931 3ICS FAD 25.2451
932 3ICR FAD 25.2451
933 2WA2 SAM 25.7246
934 1FL2 FAD 25.8065
935 2NPX NAD 25.9804
936 2NPX FAD 25.9804
937 2Q0L NAP 26.045
938 2Q0L FAD 26.045
939 2CDU ADP 26.7157
940 5J5Z FAD 26.7157
941 2CDU FAD 26.7157
942 3RNM FAD 26.9608
943 1ZK7 FAD 27.9412
944 1MO9 FAD 28.6765
945 1MO9 KPC 28.6765
946 5KMS NAD 28.8889
947 5KMS FAD 28.8889
948 3NTD FAD 29.6569
949 2F5Z FAD 29.6875
950 3KLJ FAD 30.6494
951 5VN0 FAD 30.8824
952 5VN0 NAI 30.8824
953 4BV6 FAD 32.598
954 3GD4 NAD 33.5784
955 3GD4 FAD 33.5784
956 4HSU FAD 40
957 5JCM NAD 41.9118
958 5JCM FAD 41.9118
959 5JCM ISD 41.9118
960 1XHC FAD 44.4142
961 2VOH CIT 50
Pocket No.: 2; Query (leader) PDB : 2YVF; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2yvf.bio1) has 59 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2YVF; Ligand: NAD; Similar sites found with APoc: 961
This union binding pocket(no: 3) in the query (biounit: 2yvf.bio1) has 60 residues
No: Leader PDB Ligand Sequence Similarity
1 6APL C5P 1.06952
2 5A1T NAI 1.17302
3 5A1T OXM 1.17302
4 5DNK SAH 1.22549
5 2IXB NAD 1.22549
6 2IXB A2G 1.22549
7 4BJZ FAD 1.22549
8 4BJZ P3A 1.22549
9 1Q0H FOM 1.23153
10 5OCM NAP 1.37457
11 1KGZ PRP 1.44928
12 1PJS NAD 1.47059
13 1ZGS XMM 1.47059
14 5JAQ NAI 1.47783
15 4IDC NDP 1.50602
16 4IDC 1XX 1.50602
17 1PZG A3D 1.51057
18 4CNK FAD 1.53453
19 4XYB NDP 1.53453
20 1A5Z NAD 1.5674
21 1EZ4 NAD 1.57233
22 1TB4 PEJ 1.61725
23 1HKU NAD 1.67598
24 3H8V ATP 1.71233
25 2GVC FAD 1.71569
26 1VQW FAD 1.71569
27 2GV8 FAD 1.71569
28 1MUU NAD 1.71569
29 2GV8 NDP 1.71569
30 3T3Z 9PL 1.71569
31 3K5I AIR 1.71569
32 3PT9 SAH 1.71569
33 3WQQ IB3 1.71569
34 3WQQ NDP 1.71569
35 4KRG SAH 1.71569
36 4EDF UPG 1.71569
37 4KP7 1UQ 1.71569
38 4KP7 NAP 1.71569
39 3K5I ADP 1.71569
40 5X62 SAH 1.72414
41 5AOV NAP 1.78571
42 4PLT NAI 1.81269
43 4PLT OXM 1.81269
44 5KVS 6XR 1.81818
45 5KVS NAP 1.81818
46 2O4C NAD 1.84211
47 4DCM SAM 1.86667
48 1I36 NAP 1.89394
49 4LWP SAH 1.90217
50 1GR0 NAD 1.90736
51 3ABI NAD 1.91781
52 4JK3 NAD 1.9305
53 4J4H 1J1 1.9305
54 4J4H NAI 1.9305
55 3VYW SAM 1.94805
56 1MV8 NAD 1.96078
57 5HSA FAS 1.96078
58 1FUR MLT 1.96078
59 1PN0 IPH 1.96078
60 1PN0 FAD 1.96078