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Receptor
PDB id Resolution Class Description Source Keywords
1DEL 2.2 Å EC: 2.7.4.13 DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GM ENTEROBACTERIA PHAGE T4 TRANSFERASE PHOSPHOTRANSFERASE
Ref.: CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 DEOXYNUCLEOTI WITH ITS SUBSTRATES DGMP AND ATP. EMBO J. V. 15 3487 1996
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AMP B:302;
Valid;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
DGP A:301;
B:301;
Valid;
Valid;
none;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc2...
MG A:300;
B:300;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1DEK 2 Å EC: 2.7.4.13 DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GM ENTEROBACTERIA PHAGE T4 TRANSFERASE PHOSPHOTRANSFERASE
Ref.: CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 DEOXYNUCLEOTI WITH ITS SUBSTRATES DGMP AND ATP. EMBO J. V. 15 3487 1996
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1DEL - DGP C10 H14 N5 O7 P c1nc2c(n1[....
2 1DEK - DGP C10 H14 N5 O7 P c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1DEL - DGP C10 H14 N5 O7 P c1nc2c(n1[....
2 1DEK - DGP C10 H14 N5 O7 P c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1DEL - DGP C10 H14 N5 O7 P c1nc2c(n1[....
2 1DEK - DGP C10 H14 N5 O7 P c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AMP; Similar ligands found: 395
No: Ligand ECFP6 Tc MDL keys Tc
1 A 1 1
2 AMP 1 1
3 A2D 0.833333 0.943662
4 ABM 0.833333 0.943662
5 ADP 0.823529 0.971429
6 A12 0.808824 0.931507
7 AP2 0.808824 0.931507
8 BA3 0.808824 0.943662
9 SRA 0.80303 0.944444
10 AP5 0.797101 0.943662
11 B4P 0.797101 0.943662
12 HEJ 0.788732 0.971429
13 ATP 0.788732 0.971429
14 AT4 0.785714 0.931507
15 AN2 0.785714 0.957747
16 5FA 0.777778 0.971429
17 AQP 0.777778 0.971429
18 APC 0.777778 0.931507
19 CA0 0.774648 0.917808
20 M33 0.774648 0.930556
21 AU1 0.774648 0.944444
22 ADX 0.774648 0.848101
23 ACP 0.763889 0.944444
24 50T 0.763889 0.957747
25 25A 0.75641 0.971429
26 AR6 0.753425 0.943662
27 PRX 0.753425 0.917808
28 APR 0.753425 0.943662
29 ACQ 0.746667 0.944444
30 T99 0.746667 0.931507
31 TAT 0.746667 0.931507
32 SAP 0.743243 0.918919
33 AD9 0.743243 0.944444
34 AGS 0.743243 0.918919
35 RBY 0.743243 0.905405
36 ADV 0.743243 0.905405
37 ANP 0.723684 0.944444
38 ADP PO3 0.72 0.942857
39 6YZ 0.717949 0.944444
40 5AL 0.714286 0.930556
41 SON 0.712329 0.931507
42 LMS 0.710145 0.825
43 RAB 0.709677 0.842857
44 XYA 0.709677 0.842857
45 ADN 0.709677 0.842857
46 ATF 0.705128 0.931507
47 GAP 0.701299 0.891892
48 A22 0.7 0.957747
49 SRP 0.696203 0.905405
50 7D5 0.691176 0.902778
51 A3P 0.684932 0.971014
52 A2P 0.684932 0.956522
53 ADP ALF 0.683544 0.868421
54 ALF ADP 0.683544 0.868421
55 ADQ 0.682927 0.917808
56 MAP 0.679012 0.918919
57 ADP VO4 0.675 0.930556
58 VO4 ADP 0.675 0.930556
59 OOB 0.670732 0.930556
60 9ZA 0.670732 0.906667
61 8QN 0.670732 0.930556
62 5SV 0.670732 0.87013
63 9ZD 0.670732 0.906667
64 PTJ 0.670588 0.894737
65 AOC 0.666667 0.84507
66 PAJ 0.662651 0.858974
67 4AD 0.662651 0.893333
68 A3R 0.662651 0.881579
69 A1R 0.662651 0.881579
70 AMO 0.662651 0.905405
71 5N5 0.661538 0.816901
72 DAL AMP 0.658537 0.90411
73 IMO 0.657534 0.928571
74 AHX 0.654762 0.87013
75 00A 0.654762 0.881579
76 DLL 0.654762 0.930556
77 5AS 0.653333 0.776471
78 A4D 0.651515 0.816901
79 5CD 0.651515 0.828571
80 9X8 0.647059 0.893333
81 OAD 0.647059 0.917808
82 3UK 0.647059 0.917808
83 ADP BMA 0.647059 0.891892
84 25L 0.643678 0.957747
85 PR8 0.639535 0.848101
86 WAQ 0.639535 0.881579
87 LAD 0.639535 0.858974
88 B5V 0.639535 0.905405
89 DTA 0.637681 0.808219
90 V3L 0.6375 0.971429
91 3DH 0.633803 0.794521
92 BIS 0.632184 0.906667
93 ME8 0.632184 0.8375
94 3OD 0.632184 0.917808
95 FYA 0.632184 0.930556
96 NB8 0.632184 0.87013
97 1ZZ 0.632184 0.8375
98 TXA 0.632184 0.905405
99 MTA 0.628571 0.794521
100 3AM 0.625 0.956522
101 EP4 0.623188 0.773333
102 A A 0.62069 0.971429
103 9SN 0.617977 0.87013
104 M2T 0.614286 0.753247
105 JB6 0.613636 0.881579
106 YAP 0.611111 0.893333
107 B5Y 0.611111 0.893333
108 FA5 0.611111 0.905405
109 B5M 0.611111 0.893333
110 MYR AMP 0.606742 0.814815
111 G5A 0.604938 0.776471
112 XAH 0.604396 0.8375
113 4UV 0.597826 0.893333
114 71V 0.597403 0.906667
115 ATP A A A 0.593407 0.929577
116 PAP 0.592593 0.957143
117 G3A 0.591398 0.894737
118 2AM 0.589041 0.942857
119 5X8 0.5875 0.783784
120 6RE 0.586667 0.779221
121 6C6 0.585366 0.905405
122 AFH 0.585106 0.858974
123 4UU 0.585106 0.893333
124 G5P 0.585106 0.894737
125 GA7 0.585106 0.905405
126 7D3 0.584416 0.878378
127 A5A 0.583333 0.804878
128 TSB 0.581395 0.795181
129 AMP DBH 0.580645 0.891892
130 TYR AMP 0.580645 0.868421
131 2A5 0.580247 0.891892
132 DQV 0.578947 0.930556
133 DSH 0.578947 0.74359
134 GTA 0.578947 0.860759
135 TAD 0.578947 0.858974
136 6IA 0.578313 0.858974
137 SSA 0.576471 0.776471
138 AMZ 0.575342 0.888889
139 C2R 0.575342 0.876712
140 PGS 0.575 0.857143
141 7D4 0.575 0.878378
142 ZAS 0.573333 0.786667
143 ATR 0.573171 0.942857
144 LAQ 0.572917 0.8375
145 AAM 0.571429 1
146 J7C 0.571429 0.789474
147 A3N 0.571429 0.783784
148 PPS 0.571429 0.848101
149 AIR 0.571429 0.927536
150 52H 0.569767 0.776471
151 54H 0.569767 0.785714
152 VMS 0.569767 0.785714
153 AR6 AR6 0.568421 0.916667
154 ARG AMP 0.568421 0.82716
155 7MD 0.568421 0.8375
156 YLP 0.56701 0.817073
157 48N 0.56701 0.87013
158 OVE 0.565789 0.90411
159 UPA 0.565657 0.881579
160 2SA 0.564706 0.905405
161 S4M 0.564103 0.682353
162 5CA 0.563218 0.776471
163 53H 0.563218 0.776471
164 8X1 0.563218 0.75
165 UP5 0.561224 0.893333
166 NAI 0.561224 0.881579
167 6V0 0.561224 0.87013
168 NAX 0.561224 0.848101
169 4UW 0.561224 0.858974
170 DND 0.561224 0.905405
171 TXD 0.561224 0.881579
172 NXX 0.561224 0.905405
173 NIA 0.56 0.820513
174 D5M 0.558442 0.902778
175 DA 0.558442 0.902778
176 MAO 0.556962 0.777778
177 AHZ 0.556701 0.814815
178 OMR 0.555556 0.82716
179 ITT 0.555556 0.915493
180 TYM 0.555556 0.905405
181 TXE 0.555556 0.881579
182 5AD 0.552239 0.768116
183 A2R 0.551724 0.957747
184 LPA AMP 0.55102 0.814815
185 DSZ 0.550562 0.776471
186 NSS 0.550562 0.776471
187 LSS 0.550562 0.758621
188 AP0 0.55 0.87013
189 YLC 0.55 0.8375
190 4TC 0.55 0.87013
191 YLB 0.55 0.817073
192 P5A 0.549451 0.741573
193 139 0.54902 0.848101
194 A4P 0.544554 0.819277
195 NVA LMS 0.544444 0.75
196 GJV 0.544304 0.769231
197 7D7 0.544118 0.763889
198 9K8 0.543478 0.711111
199 A7D 0.54321 0.797297
200 AF3 ADP 3PG 0.54 0.835443
201 6K6 0.539326 0.957143
202 IOT 0.539216 0.829268
203 A3G 0.538462 0.797297
204 LEU LMS 0.538462 0.75
205 A5D 0.535714 0.808219
206 7MC 0.534653 0.817073
207 T5A 0.533981 0.817073
208 ADJ 0.533981 0.82716
209 YLA 0.533981 0.817073
210 GSU 0.532609 0.776471
211 KAA 0.532609 0.75
212 7RA 0.531646 0.985507
213 SFG 0.53012 0.77027
214 SAH 0.529412 0.763158
215 HFD 0.529412 0.918919
216 AYB 0.528846 0.807229
217 CNA 0.528846 0.905405
218 N6P 0.527473 0.942029
219 8BR 0.525 0.931507
220 F2R 0.52381 0.839506
221 80F 0.523364 0.817073
222 Y3J 0.521127 0.746479
223 YSA 0.520833 0.776471
224 7RP 0.518987 0.955882
225 BTX 0.518868 0.839506
226 NAD 0.518868 0.930556
227 COD 0.518868 0.788235
228 G A A A 0.518868 0.87013
229 MHZ 0.518072 0.714286
230 SA8 0.517647 0.725
231 6AD 0.517241 0.883117
232 DZD 0.514019 0.858974
233 BT5 0.514019 0.829268
234 RMB 0.5125 0.898551
235 SAI 0.511628 0.753247
236 AV2 0.511364 0.890411
237 8PZ 0.510417 0.776471
238 A3D 0.509259 0.917808
239 A3S 0.506024 0.808219
240 3AT 0.505747 0.943662
241 SAM 0.505747 0.707317
242 SMM 0.505618 0.702381
243 NA7 0.505376 0.931507
244 4TA 0.504673 0.804878
245 AMP NAD 0.504673 0.90411
246 EEM 0.5 0.707317
247 G 0.5 0.905405
248 NEC 0.5 0.743243
249 5GP 0.5 0.905405
250 AAT 0.5 0.725
251 YLY 0.495495 0.807229
252 M24 0.495495 0.848101
253 7C5 0.494949 0.815789
254 DAT 0.494118 0.878378
255 A3T 0.494118 0.819444
256 P2P 0.493827 0.928571
257 FAI 0.493827 0.888889
258 1RB 0.493671 0.911765
259 NAE 0.491071 0.893333
260 U A 0.490909 0.906667
261 NAJ PZO 0.490909 0.846154
262 A G 0.490741 0.881579
263 TM1 0.489583 0.771084
264 A A A 0.489362 0.90411
265 A6D 0.489362 0.740741
266 PO4 PO4 A A A A PO4 0.489362 0.901408
267 S7M 0.488889 0.707317
268 DTP 0.488636 0.878378
269 RBZ 0.4875 0.873239
270 101 0.4875 0.902778
271 EAD 0.486957 0.848101
272 NAQ 0.486726 0.87013
273 U A G G 0.486239 0.881579
274 4YB 0.485149 0.758621
275 NDE 0.483051 0.931507
276 ZID 0.482456 0.917808
277 N0B 0.482456 0.817073
278 WSA 0.480769 0.785714
279 RGT 0.479592 0.931507
280 ARU 0.478723 0.835443
281 GGZ 0.478261 0.8
282 JLN 0.47561 0.863014
283 ANZ 0.475248 0.820513
284 QQY 0.475 0.837838
285 ACK 0.475 0.885714
286 NAJ PYZ 0.473684 0.804878
287 S8M 0.473118 0.779221
288 GEK 0.473118 0.734177
289 AVV 0.473118 0.87013
290 3AD 0.472973 0.828571
291 A U 0.471698 0.868421
292 P1H 0.470588 0.82716
293 0UM 0.468085 0.716049
294 RVP 0.467532 0.847222
295 649 0.466667 0.741573
296 Z5A 0.465517 0.776471
297 PMO 0.464286 0.873239
298 SXZ 0.463918 0.707317
299 62X 0.463158 0.682353
300 QQX 0.4625 0.826667
301 8Q2 0.462264 0.75
302 2VA 0.45977 0.797297
303 IMP 0.458824 0.90411
304 K15 0.458333 0.698795
305 CC5 0.458333 0.84058
306 AS 0.457831 0.855263
307 DDS 0.455556 0.851351
308 V1N 0.455446 0.943662
309 NJP 0.454545 0.918919
310 7DD 0.453488 0.957143
311 93A 0.453488 0.804878
312 G7M 0.453488 0.87013
313 3L1 0.453333 0.77027
314 3D1 0.453333 0.77027
315 EO7 0.452381 0.785714
316 NDC 0.45082 0.87013
317 FB0 0.45082 0.781609
318 0WD 0.45045 0.894737
319 NVA 2AD 0.449438 0.75641
320 26A 0.447368 0.76
321 2FA 0.447368 0.810811
322 2BA 0.447059 0.914286
323 CMP 0.447059 0.927536
324 D3Y 0.446809 0.786667
325 KB1 0.444444 0.716049
326 APU 0.444444 0.893333
327 VRT 0.444444 0.766234
328 SO8 0.444444 0.786667
329 FDA 0.443548 0.809524
330 PUA 0.443478 0.858974
331 ODP 0.441441 0.883117
332 6FA 0.44 0.817073
333 103 0.439024 0.861111
334 RP1 0.439024 0.864865
335 SP1 0.439024 0.864865
336 3NZ 0.438776 0.779221
337 A C A C 0.438596 0.846154
338 7DT 0.438202 0.957143
339 NDP 0.436364 0.894737
340 NPW 0.436364 0.860759
341 MTP 0.434211 0.727273
342 FAS 0.433071 0.82716
343 SFD 0.433071 0.712766
344 FAD 0.433071 0.82716
345 IRN 0.432432 0.867647
346 ZZB 0.432432 0.792683
347 TXP 0.432432 0.894737
348 NZQ 0.432432 0.883117
349 62F 0.430769 0.8375
350 FNK 0.430769 0.781609
351 128 0.429907 0.752941
352 1DA 0.428571 0.842857
353 6MD 0.428571 0.805556
354 PAX 0.428571 0.82716
355 SLU 0.426087 0.767442
356 XNP 0.424779 0.848101
357 12D 0.424528 0.761905
358 5F1 0.423077 0.72973
359 ETB 0.422414 0.809524
360 DCA 0.422414 0.8
361 F0P 0.422018 0.725
362 WMP 0.421053 0.864865
363 GUO 0.421053 0.864865
364 FAY 0.416667 0.8375
365 38Y 0.415929 0.804878
366 5J9 0.415842 0.728395
367 COA 0.415254 0.8
368 0T1 0.415254 0.8
369 KH3 0.415094 0.690476
370 U A C C 0.413793 0.857143
371 N01 0.413793 0.90411
372 FMP 0.413793 0.871429
373 RFL 0.413534 0.797619
374 NMN AMP PO4 0.412281 0.868421
375 GP2 0.408602 0.858974
376 GDP 0.408602 0.893333
377 NAP 0.408333 0.944444
378 NOC 0.407895 0.760563
379 2ER 0.405941 0.831169
380 1PR 0.405941 0.820513
381 P5F 0.405797 0.8
382 CAO 0.404959 0.772727
383 TAP 0.404959 0.906667
384 30N 0.404959 0.731183
385 COS 0.404959 0.781609
386 AMX 0.404959 0.809524
387 XMP 0.402299 0.891892
388 G2P 0.402062 0.858974
389 APC G U 0.401709 0.833333
390 U A A U 0.401639 0.906667
391 CMX 0.401639 0.8
392 NA0 0.401639 0.931507
393 SCO 0.401639 0.8
394 9JJ 0.40146 0.8375
395 F2N 0.4 0.790698
Ligand no: 2; Ligand: DGP; Similar ligands found: 85
No: Ligand ECFP6 Tc MDL keys Tc
1 DGP 1 1
2 DG 1 1
3 DGI 0.815789 0.986842
4 DGT 0.775 0.986842
5 DG DG 0.693182 0.925
6 DI 0.62963 0.973333
7 5GP 0.60241 0.922078
8 G 0.60241 0.922078
9 CGP 0.596154 0.925926
10 DC DG 0.575472 0.902439
11 GDP 0.516484 0.910256
12 GH3 0.515789 0.935065
13 DA 0.511905 0.894737
14 D5M 0.511905 0.894737
15 3GP 0.505747 0.909091
16 2GP 0.505747 0.922078
17 GP3 0.505495 0.8875
18 G3D 0.505263 0.922078
19 GTP 0.5 0.910256
20 GP2 0.5 0.924051
21 G4P 0.494845 0.922078
22 GNH 0.494624 0.898734
23 P2G 0.494382 0.871795
24 G2P 0.489583 0.924051
25 GMP 0.487805 0.797468
26 ALF 5GP 0.484211 0.833333
27 GMV 0.484211 0.8875
28 P1G 0.483516 0.884615
29 G2R 0.48 0.948718
30 GAV 0.479592 0.876543
31 GCP 0.479167 0.911392
32 G1R 0.479167 0.898734
33 6OG 0.477778 0.886076
34 0O2 0.475248 0.922078
35 GNP 0.474227 0.8875
36 9GM 0.474227 0.8875
37 GSP 0.474227 0.865854
38 3PD UM3 0.473214 0.878049
39 DOI 0.47191 0.87013
40 DG DA DC DG 0.469697 0.891566
41 DG DC 0.466667 0.9375
42 GPG 0.460784 0.876543
43 GPX 0.46 0.909091
44 GDP ALF 0.455446 0.833333
45 ALF GDP 0.455446 0.833333
46 CF2 0.451613 0.811765
47 3ZE 0.451613 0.897436
48 DA DU DG DA 0.451327 0.845238
49 GPD 0.449541 0.890244
50 GDC 0.443396 0.876543
51 Y9Z 0.443396 0.869048
52 GKE 0.443396 0.876543
53 GDD 0.443396 0.876543
54 GCP G 0.442308 0.884615
55 DA DC DG DA 0.442029 0.925926
56 GDP AF3 0.441176 0.833333
57 G3A 0.435185 0.8875
58 YGP 0.433962 0.845238
59 DC DG DA DC 0.431818 0.91358
60 G5P 0.431193 0.8875
61 SGP 0.430108 0.817073
62 JB2 0.427273 0.876543
63 GDR 0.425926 0.876543
64 G G 0.425926 0.8875
65 GFB 0.425926 0.876543
66 GTG 0.425926 0.855422
67 DAT 0.425532 0.896104
68 6CK 0.422018 0.855422
69 DT DA DC DG 0.42069 0.870588
70 DC DG DT DA 0.417808 0.870588
71 GKD 0.414414 0.876543
72 DU DU DU DU BRU DG DU 0.414062 0.827586
73 BGO 0.413793 0.865854
74 U2G 0.413793 0.855422
75 GDX 0.410714 0.8875
76 DTP 0.408163 0.896104
77 CG2 0.40678 0.855422
78 AS 0.406593 0.85
79 GDP 7MG 0.405405 0.853659
80 JB3 0.405172 0.865854
81 UCG 0.404762 0.876543
82 8OG 0.404255 0.855422
83 FEG 0.401709 0.869048
84 NGD 0.401709 0.876543
85 G A A A 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1DEK; Ligand: DGP; Similar sites found with APoc: 91
This union binding pocket(no: 1) in the query (biounit: 1dek.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 1SQL GUN None
2 4F06 PHB 1.65975
3 3CQL NAG 1.65975
4 3PMA SCR 2.07469
5 3B6C SDN 2.13675
6 1KDO C 2.20264
7 1JA9 PYQ 2.48963
8 4OKD GLC GLC GLC 2.48963
9 5EO8 TFU 2.48963
10 6CI9 F3V 2.48963
11 4FN4 NAD 2.48963
12 3KP6 SAL 2.64901
13 3BU1 HSM 2.7027
14 3KIF GDL 2.83019
15 6CB2 OLC 2.90456
16 3K4Z CBI 2.90456
17 6DND PLP 2.90456
18 6DAW ARG 2.90456
19 2E3N 6CM 2.90456
20 5CHR 4NC 2.91971
21 5X3R 7Y3 2.92683
22 3KO0 TFP 2.9703
23 5KZV HCD 3.14961
24 5V3Y 5V8 3.3195
25 4Q86 AMP 3.3195
26 1OKE BOG 3.3195
27 6BTN E8M 3.46535
28 2GMP NAG MAN 3.73444
29 2V95 HCY 3.73444
30 3PD6 PMP 3.73444
31 5W6Y TRP 3.73444
32 1X1T NAD 3.73444
33 2PHU MAN MAN 3.73444
34 4F4S EFO 3.94737
35 3WUR O4B 4.09357
36 5WX3 COA 4.14938
37 3HP9 CF1 4.14938
38 2VK2 GZL 4.56432
39 1G0N NDP 4.56432
40 1G0N PHH 4.56432
41 5E58 CPZ 4.56432
42 4RQL SNE 4.97925
43 4NMC 2OP 4.97925
44 2ZFZ ARG 5.06329
45 4H6Q TFB 5.39419
46 2JFZ DGL 5.39419
47 2JFZ 003 5.39419
48 4URX FK1 5.39419
49 4OGQ 7PH 5.58659
50 1MZC SUC 5.80913
51 5DY5 5GR 5.80913
52 4WGF HX2 5.85366
53 1OYJ GSH 6.06061
54 3I6B KDO 6.11111
55 5OF1 SAL 6.19048
56 6FK6 DOK 6.22407
57 4UCC ZKW 6.43777
58 5CX6 CDP 6.639
59 2Q89 6CS 6.639
60 1QMG DMV 6.639
61 5TQZ GLC 6.66667
62 3E81 SLB 6.70732
63 4COL DTP 7.05394
64 4BNU 9KQ 7.0632
65 5LX9 OLB 7.46888
66 1Y4Z PCI 7.55556
67 3SQP 3J8 7.88382
68 3KXC PLM 8.86076
69 4XDY HIO 9.12863
70 5K7K 6RJ 9.12863
71 1NXJ TLA 9.28962
72 3RUG DB6 9.31373
73 5DCH 1YO 9.375
74 3NUG NAD 9.7166
75 6BYM HC3 9.85222
76 4TV1 36M 10.3734
77 2Y69 CHD 10.4651
78 5Z84 CHD 10.5882
79 5ZCO CHD 10.5882
80 5W97 CHD 10.5882
81 2DYR TGL 10.5882
82 2DYS TGL 10.5882
83 3A70 NPO 12.4481
84 4ZDM GLY 12.4481
85 6C0B PAM 12.8205
86 3ZZL TRP 12.8571
87 2V5E SCR 14.8515
88 4DE3 DN8 17.0124
89 4YMU ARG 18.3333
90 5MWE TCE 24.2857
91 1T0S BML 26.7442
Pocket No.: 2; Query (leader) PDB : 1DEK; Ligand: DGP; Similar sites found with APoc: 66
This union binding pocket(no: 2) in the query (biounit: 1dek.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 4B4Q A2G GAL NAG FUC GAL GLC None
2 2BO4 FLC 1.65975
3 3ZUY TCH 1.65975
4 1FDJ 13P 2.07469
5 3HQP FDP 2.07469
6 5HCY 60D 2.07469
7 4PYW ACE THR THR ALA ILE NH2 2.07469
8 2BII MTV 2.48963
9 3HDY FAD 2.48963
10 4D52 GXL 2.48963
11 2BHZ MAL 2.90456
12 5N0O HSE 2.90456
13 4RPL 3UC 2.90456
14 4RPL FAD 2.90456
15 5EYY MDM 2.90456
16 1XG5 NAP 2.90456
17 3OKI OKI 3.00429
18 5UC9 MYR 3.3195
19 1TIW TFB 3.3195
20 1TIW FAD 3.3195
21 4N14 WR7 3.3195
22 1Q8V MAN MAN 3.73444
23 2HZL PYR 3.73444
24 2GND MAN MMA 3.73444
25 2PHW MAN MAN 3.73444
26 2GNM MAN 3.73444
27 2PHR MAN MAN 3.73444
28 2PHT MAN MAN MAN 3.73444
29 2PHF MAN MAN 3.73444
30 1Q8O MAN MMA 3.73444
31 5X20 AOT 3.73444
32 2BIF BOG 3.73444
33 2GND MAN 3.73444
34 3PDB PMP 3.73444
35 5E9G GLV 3.73444
36 2PHX MAN MAN MAN MAN 3.73444
37 1Q8P MAN MMA 3.73444
38 3EZ2 ADP 3.73444
39 1Q8V MAN MAN MAN 3.73444
40 1TL2 NDG 3.81356
41 5OSW DIU 4.56432
42 5GUD NDP 4.56432
43 5GUD CIT 4.56432
44 5WHU SIA GAL GLC 4.69799
45 2GL0 ADN 4.79042
46 4NMC FAD 4.97925
47 2Q1A 2KT 4.97925
48 2QES ADE 5.39419
49 1VAY AZA 5.39419
50 3VRV YSD 5.80913
51 3W9F I3P 5.80913
52 2ZCQ B65 6.22407
53 4XT8 NAP 7.05394
54 4XT8 TMQ 7.05394
55 3JQ7 DX2 7.05394
56 3BRN SRO 7.64331
57 1C1L GAL BGC 10.219
58 4MGA 27L 10.3734
59 2QE4 JJ3 10.3734
60 5ZCO TGL 10.5882
61 1NX0 ALA LYS ALA ILE ALA 10.9827
62 4KP7 NAP 11.2033
63 4KP7 1UQ 11.2033
64 3H78 BE2 12.8631
65 3R3V FAH 18.6722
66 1DCP HBI 19.2308
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