Receptor
PDB id Resolution Class Description Source Keywords
1DL5 1.8 Å EC: 2.1.1.77 PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE THERMOTOGA MARITIMA METHYLTRANSFERASE ISOASPARTYL RESIDUES PROTEIN REPAIR DEAMIDATION POST-TRANSLATIONAL MODIFICATION
Ref.: CRYSTAL STRUCTURE OF PROTEIN ISOASPARTYL METHYLTRANSFERASE: A CATALYST FOR PROTEIN REPAIR. STRUCTURE FOLD.DES. V. 8 1189 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CD A:601;
A:621;
A:641;
A:650;
A:651;
B:701;
B:721;
B:741;
B:761;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
112.411 Cd [Cd+2...
CL A:603;
A:604;
A:622;
A:623;
B:702;
B:703;
B:722;
B:723;
B:742;
B:743;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
SAH A:699;
B:1699;
Valid;
Valid;
none;
none;
submit data
384.411 C14 H20 N6 O5 S c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1DL5 1.8 Å EC: 2.1.1.77 PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE THERMOTOGA MARITIMA METHYLTRANSFERASE ISOASPARTYL RESIDUES PROTEIN REPAIR DEAMIDATION POST-TRANSLATIONAL MODIFICATION
Ref.: CRYSTAL STRUCTURE OF PROTEIN ISOASPARTYL METHYLTRANSFERASE: A CATALYST FOR PROTEIN REPAIR. STRUCTURE FOLD.DES. V. 8 1189 2000
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1DL5 - SAH C14 H20 N6 O5 S c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1DL5 - SAH C14 H20 N6 O5 S c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1DL5 - SAH C14 H20 N6 O5 S c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAH; Similar ligands found: 197
No: Ligand ECFP6 Tc MDL keys Tc
1 SAH 1 1
2 5X8 0.759494 0.969697
3 A7D 0.734177 0.926471
4 TT8 0.709302 0.970588
5 SXZ 0.692308 0.916667
6 DSH 0.692308 0.914286
7 DTA 0.666667 0.857143
8 3DH 0.662338 0.869565
9 S8M 0.655556 0.901408
10 SFG 0.635294 0.954545
11 SA8 0.62069 0.915493
12 EEM 0.617977 0.890411
13 MTA 0.615385 0.869565
14 SAI 0.613636 0.955882
15 S7M 0.586957 0.916667
16 36A 0.586538 0.90411
17 K15 0.583333 0.878378
18 RAB 0.573333 0.84058
19 ADN 0.573333 0.84058
20 XYA 0.573333 0.84058
21 62X 0.572917 0.855263
22 5CD 0.571429 0.852941
23 0UM 0.5625 0.876712
24 5N5 0.558442 0.84058
25 A4D 0.551282 0.867647
26 SAM 0.537634 0.916667
27 SSA 0.536842 0.712644
28 SMM 0.536842 0.88
29 KB1 0.534653 0.902778
30 A5D 0.532609 0.857143
31 SIB 0.53125 0.928571
32 EP4 0.530864 0.819444
33 DSZ 0.530612 0.732558
34 GSU 0.53 0.752941
35 AMP 0.529412 0.763158
36 A 0.529412 0.763158
37 5CA 0.525773 0.712644
38 ME8 0.524752 0.8125
39 M2T 0.52439 0.821918
40 6RE 0.523256 0.824324
41 GJV 0.522727 0.813333
42 AAT 0.515789 0.863014
43 LSS 0.515152 0.696629
44 KAA 0.514852 0.727273
45 J7C 0.511364 0.835616
46 A5A 0.510417 0.697674
47 SON 0.505495 0.805195
48 SRP 0.505155 0.805195
49 5AL 0.5 0.779221
50 VMS 0.5 0.681818
51 KH3 0.5 0.866667
52 ADX 0.5 0.694118
53 CA0 0.5 0.769231
54 AMP MG 0.5 0.74359
55 AMO 0.5 0.805195
56 54H 0.5 0.681818
57 AHX 0.49505 0.753086
58 TSB 0.494949 0.689655
59 53H 0.494949 0.674157
60 G5A 0.494737 0.712644
61 A2D 0.494382 0.74359
62 ABM 0.494382 0.74359
63 ZAS 0.494253 0.808219
64 A6D 0.490196 0.759494
65 8QN 0.49 0.779221
66 GEK 0.49 0.956522
67 GAP 0.489583 0.769231
68 A3S 0.48913 0.884058
69 AN2 0.48913 0.734177
70 S4M 0.488889 0.831169
71 SRA 0.488636 0.746835
72 LAD 0.485437 0.810127
73 52H 0.484848 0.674157
74 A12 0.483516 0.759494
75 BA3 0.483516 0.74359
76 AP2 0.483516 0.759494
77 AOC 0.483146 0.842857
78 NEC 0.483146 0.788732
79 Y3J 0.481481 0.768116
80 NVA LMS 0.480392 0.696629
81 VRT 0.479167 0.861111
82 50T 0.478723 0.734177
83 5AS 0.478261 0.655556
84 B4P 0.478261 0.74359
85 ADP 0.478261 0.74359
86 AP5 0.478261 0.74359
87 A3N 0.477778 0.830986
88 YSA 0.476636 0.712644
89 XAH 0.476636 0.768293
90 0XU 0.473684 0.897059
91 WAQ 0.471154 0.807692
92 NSS 0.470588 0.712644
93 5AD 0.468354 0.791045
94 ADP MG 0.468085 0.734177
95 AU1 0.468085 0.725
96 M33 0.468085 0.734177
97 MAO 0.467391 0.797468
98 TXA 0.466667 0.759494
99 A3G 0.466667 0.871429
100 NB8 0.466667 0.775
101 3AM 0.465909 0.727273
102 DAL AMP 0.465347 0.779221
103 ATP 0.463158 0.74359
104 ADP BEF 0.463158 0.716049
105 A3T 0.463158 0.842857
106 BEF ADP 0.463158 0.716049
107 ACP 0.463158 0.746835
108 7D7 0.4625 0.785714
109 LEU LMS 0.461538 0.677778
110 APC 0.458333 0.759494
111 AQP 0.458333 0.74359
112 APR 0.458333 0.766234
113 PRX 0.458333 0.746835
114 AR6 0.458333 0.766234
115 5FA 0.458333 0.74359
116 IOT 0.456897 0.761905
117 4AD 0.456311 0.794872
118 PAJ 0.456311 0.722892
119 WSA 0.45614 0.72093
120 FA5 0.453704 0.805195
121 YAP 0.453704 0.794872
122 RBY 0.453608 0.782051
123 ADV 0.453608 0.782051
124 ADP PO3 0.453608 0.763158
125 AD9 0.453608 0.725
126 SAP 0.453608 0.728395
127 AGS 0.453608 0.728395
128 PTJ 0.45283 0.731707
129 MHZ 0.452632 0.797468
130 00A 0.451923 0.740741
131 A3P 0.451613 0.74026
132 YLP 0.451327 0.771084
133 7MD 0.45045 0.768293
134 ALF ADP 0.45 0.707317
135 ADP ALF 0.45 0.707317
136 ATP MG 0.44898 0.734177
137 2VA 0.447917 0.819444
138 OOB 0.446602 0.779221
139 ANP 0.444444 0.725
140 ACQ 0.444444 0.746835
141 TAT 0.444444 0.7375
142 P5A 0.443396 0.719101
143 7D5 0.443182 0.708861
144 ARG AMP 0.442478 0.759036
145 A1R 0.442308 0.7625
146 YLC 0.439655 0.790123
147 2AM 0.438202 0.717949
148 DLL 0.438095 0.779221
149 A22 0.436893 0.734177
150 D3Y 0.436893 0.859155
151 TYR AMP 0.436364 0.782051
152 ATF 0.435644 0.716049
153 MYR AMP 0.435185 0.746988
154 SO8 0.434343 0.808219
155 3UK 0.433962 0.769231
156 OAD 0.433962 0.769231
157 TAD 0.433628 0.765432
158 25A 0.432692 0.74359
159 ANP MG 0.431373 0.707317
160 VO4 ADP 0.431373 0.734177
161 ADP VO4 0.431373 0.734177
162 9SN 0.431193 0.731707
163 TYM 0.431034 0.805195
164 PR8 0.429907 0.8
165 ADQ 0.428571 0.746835
166 YLB 0.42735 0.771084
167 3OD 0.425926 0.769231
168 FYA 0.425926 0.779221
169 1ZZ 0.425926 0.746988
170 PPS 0.425743 0.674419
171 NVA 2AD 0.424242 0.808219
172 MAP 0.423077 0.707317
173 A2P 0.421053 0.727273
174 4YB 0.421053 0.735632
175 ADP BMA 0.420561 0.746835
176 5SV 0.419048 0.731707
177 3NZ 0.416667 0.824324
178 YLA 0.416667 0.771084
179 48N 0.413793 0.753086
180 LPA AMP 0.413793 0.768293
181 AYB 0.413223 0.761905
182 QQY 0.413043 0.696203
183 ACK 0.413043 0.710526
184 JB6 0.412844 0.7625
185 BIS 0.412844 0.719512
186 PAP 0.41 0.730769
187 OVE 0.408602 0.7125
188 4UV 0.40708 0.75
189 AMP DBH 0.40708 0.746835
190 3AD 0.406977 0.852941
191 AF3 ADP 3PG 0.40678 0.743902
192 OMR 0.40678 0.738095
193 LAQ 0.405172 0.768293
194 A A 0.40367 0.74359
195 7C5 0.403509 0.789474
196 7MC 0.403361 0.75
197 4UU 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1DL5; Ligand: SAH; Similar sites found: 448
This union binding pocket(no: 1) in the query (biounit: 1dl5.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4RDH AMP 0.005186 0.42484 1.04167
2 3ITJ CIT 0.000436 0.51027 1.26183
3 1DQN IMU 0.01121 0.42497 1.30435
4 4U60 SIA 0.01782 0.4177 1.42857
5 2D2F ADP 0.005315 0.46478 1.6
6 3MAN BMA BMA MAN 0.0312 0.41149 1.65563
7 3U31 NAD 0.006408 0.40387 1.72414
8 5XVK SAH 0.0001874 0.4411 1.76056
9 1NJR XYL 0.002445 0.40479 1.76056
10 2WK1 SAH 0.003806 0.41662 1.77305
11 3DMH SAM 0.000002548 0.55255 1.89274
12 3DMH GMP 0.00001473 0.48849 1.89274
13 1V8K ANP 0.0164 0.41237 1.89274
14 4OPC FDA 0.03421 0.40599 1.89274
15 3B6O TMP 0.03269 0.40495 2.02429
16 3H8V ATP 0.002102 0.43502 2.05479
17 1NE7 16G 0.01038 0.43134 2.07612
18 4YAG NAI 0.01066 0.40095 2.07612
19 1Y63 ADP 0.01144 0.42022 2.17391
20 2EJU SAH 0.000002023 0.56949 2.2082
21 5X62 SAH 0.000007458 0.55049 2.2082
22 3COB ADP 0.0009821 0.49356 2.2082
23 5F8F SFG 0.0003313 0.48044 2.2082
24 2WPF FAD 0.003861 0.44862 2.2082
25 2WPF WPF 0.005576 0.44271 2.2082
26 1BZL FAD 0.005362 0.44257 2.2082
27 1GOJ ADP 0.01264 0.43621 2.2082
28 4PPF FLC 0.01915 0.42203 2.2082
29 4MIG G3F 0.004702 0.42112 2.2082
30 2NCD ADP 0.0219 0.41729 2.2082
31 1YQT ADP 0.02447 0.41449 2.2082
32 4RSL FAD 0.007267 0.40188 2.2082
33 1BW9 PPY 0.01957 0.40121 2.2082
34 4BQS ADP 0.02467 0.40345 2.27273
35 4BLW AMP 0.00009069 0.47642 2.42215
36 4BLW SAH 0.00004656 0.47634 2.42215
37 1RP0 AHZ 0.0005933 0.44083 2.46479
38 5DXA SFG 0.000009309 0.51792 2.52366
39 5DX8 SFG 0.000009838 0.51694 2.52366
40 5DX1 SFG 0.000004875 0.50913 2.52366
41 5DWQ SFG 0.00001465 0.48537 2.52366
42 4AZW SAM 0.0002213 0.47398 2.52366
43 2B9W FAD 0.006081 0.42106 2.52366
44 4USR FAD 0.002865 0.41475 2.52366
45 2A14 SAH 0.00018 0.46907 2.6616
46 3I9U DTU 0.04015 0.40919 2.6616
47 3G2O SAM 0.000003156 0.56089 2.67559
48 3A4M ADP 0.01538 0.42231 2.69231
49 1JQ3 AAT 0.00001313 0.45849 2.7027
50 1D4O NAP 0.003293 0.40417 2.71739
51 2PZM UDP 0.005111 0.41519 2.72727
52 2PZM NAD 0.005111 0.41519 2.72727
53 1UWK NAD 0.0006231 0.4553 2.83912
54 3C0O M6P 0.006807 0.45413 2.83912
55 5JAQ NAI 0.001162 0.43773 2.83912
56 4ZNO SUC 0.02329 0.42911 2.83912
57 5U8U FAD 0.005615 0.42807 2.83912
58 3LRE ADP 0.01751 0.42636 2.83912
59 2ZWA SAH 0.002145 0.42386 2.83912
60 4RPL 3UC 0.009979 0.41835 2.83912
61 4RPL FAD 0.01086 0.41489 2.83912
62 2Z9I GLY ALA THR VAL 0.04833 0.40411 2.83912
63 3QVL 5HY 0.02445 0.4 2.85714
64 1IM8 SAI 0.00002541 0.50978 2.86885
65 3BOS CDP 0.025 0.40316 2.89256
66 1KYQ NAD 0.003644 0.42807 2.91971
67 5U75 SIA GAL NDG FUC 0.01777 0.4025 2.97619
68 1X9I G6Q 0.02013 0.40415 2.98013
69 3FZG SAM 0.002133 0.44281 3
70 3K56 IS3 0.01018 0.41482 3.00752
71 1LVL NAD 0.0007316 0.44731 3.05677
72 1G60 SAM 0.000006341 0.54135 3.07692
73 2FK8 SAM 0.0002006 0.47137 3.15457
74 2CDU ADP 0.001041 0.45286 3.15457
75 5MBX SP5 0.003144 0.43261 3.15457
76 5MBX FAD 0.003144 0.43261 3.15457
77 2ZWI C5P 0.01328 0.41697 3.15457
78 1ELI PYC 0.003692 0.41604 3.15457
79 1Q9I TEO 0.008959 0.41453 3.15457
80 1WDT GTP 0.006832 0.41216 3.15457
81 5BUK FAD 0.007002 0.41038 3.15457
82 1R6D DAU 0.01442 0.40276 3.15457
83 2DPM SAM 0.00001022 0.52139 3.16901
84 1W6F ISZ 0.02221 0.41156 3.23741
85 2PXX SAH 0.0002143 0.47459 3.25581
86 1UAY ADN 0.0005156 0.47651 3.30579
87 4DMG SAM 0.0001164 0.51326 3.30789
88 4YMU ATP 0.02893 0.40373 3.33333
89 2ZIF SAM 0.00000008115 0.62402 3.367
90 5MGZ SAH 0.00005723 0.49963 3.38983
91 1E96 GTP 0.005195 0.40185 3.44828
92 3LKZ SFG 0.000002769 0.55707 3.47003
93 4M73 SAH 0.00003965 0.49384 3.47003
94 1X87 NAD 0.00009861 0.4757 3.47003
95 4KIB SAH 0.000005402 0.46971 3.47003
96 2AWN ADP 0.005968 0.4578 3.47003
97 2IZ1 ATR 0.004134 0.44993 3.47003
98 1T5C ADP 0.01488 0.43154 3.47003
99 4M73 M72 0.00003245 0.42978 3.47003
100 5G3U FDA 0.002453 0.42332 3.47003
101 5G3U ITW 0.01108 0.40203 3.47003
102 4TQG NDP 0.002545 0.40033 3.47003
103 1G6H ADP 0.0038 0.46946 3.50195
104 3I53 SAH 0.0005517 0.45256 3.61446
105 5IL1 SAM 0.003005 0.42809 3.66667
106 1BC5 SAH 0.0006697 0.44142 3.71747
107 1SQS TLA 0.02162 0.41364 3.71901
108 2ZFU SAH 0.0001007 0.4399 3.72093
109 3GRU AMP 0.00002433 0.47439 3.72881
110 5THY SAH 0.00001037 0.52646 3.78549
111 4GQB 0XU 0.00002963 0.49264 3.78549
112 1V6A TRE 0.003248 0.45893 3.78549
113 3SQP FAD 0.007225 0.45436 3.78549
114 5KOK SAH 0.00004007 0.4505 3.78549
115 5KOK S9T 0.0006535 0.44186 3.78549
116 1MO9 KPC 0.004226 0.44124 3.78549
117 1MO9 FAD 0.004443 0.43972 3.78549
118 2XT3 ADP 0.01249 0.43348 3.78549
119 5FA5 MTA 0.00007624 0.42269 3.78549
120 5KOK R9T 0.002887 0.41462 3.78549
121 4EUE NAI 0.0004759 0.41283 3.78549
122 4X60 SFG 0.00009474 0.40607 3.78549
123 5XDR ADP 0.02179 0.40246 3.78549
124 4X60 3XV 0.0001016 0.40156 3.78549
125 1TL2 NDG 0.02576 0.41046 3.81356
126 1MZV AMP 0.005295 0.43696 3.82979
127 3MBI HSX 0.009767 0.42804 3.83275
128 3GCZ SAM 0.000001291 0.49202 3.90071
129 5M58 SAH 0.0001621 0.4278 3.91304
130 2W58 ADP 0.01113 0.4388 3.9604
131 4A6D SAM 0.0006391 0.45386 3.96601
132 1ZX5 LFR 0.01347 0.41531 4
133 1VBO MAN 0.01117 0.42813 4.02685
134 2AJH MET 0.02547 0.4112 4.08163
135 2XYQ SAH 0.00001514 0.53054 4.09836
136 3SSO SAH 0.00009439 0.48539 4.10095
137 2EG5 SAH 0.0004405 0.47976 4.10095
138 1Y8Q ATP 0.001124 0.42878 4.10095
139 2JHP SAH 0.005074 0.42152 4.10095
140 2HZL PYR 0.03341 0.40485 4.10095
141 5J6Y GLC 0.04782 0.40074 4.25532
142 5J6Y BGC 0.04782 0.40074 4.25532
143 1OCU PIB 0.01297 0.40238 4.32099
144 1WY7 SAH 0.0000004669 0.57765 4.34783
145 1JJV ATP 0.0293 0.40875 4.36893
146 4P83 U5P 0.008474 0.42675 4.3956
147 5HJM MTA 0.00000591 0.54269 4.4164
148 3LAD FAD 0.002262 0.42896 4.4164
149 2WHX ADP 0.01374 0.42772 4.4164
150 4REP FAD 0.002659 0.42296 4.4164
151 4USQ FAD 0.002653 0.41732 4.4164
152 3U1T MLI 0.03437 0.40383 4.4164
153 1T36 ORN 0.03871 0.40104 4.4164
154 2PS1 ORO 0.009576 0.42848 4.42478
155 3BFV ADP 0.02795 0.40071 4.42804
156 3P2E SAH 0.002471 0.42466 4.44444
157 5ULP KB1 0.000001134 0.54995 4.47761
158 4WZ6 ATP 0.02728 0.4126 4.48276
159 1F6B GDP 0.02412 0.40029 4.54545
160 3RKR NAP 0.01492 0.41444 4.58015
161 1JI0 ATP 0.03961 0.4005 4.58333
162 2RBK VN4 0.04489 0.40023 4.5977
163 3BGD SAH 0.0005064 0.44642 4.61538
164 3BGD PM6 0.001434 0.41324 4.61538
165 3OFK SAH 0.003437 0.41526 4.62963
166 3LCC SAH 0.00006295 0.50833 4.68085
167 3EVG SAH 0.000001265 0.57858 4.72727
168 5JJR SAH 0.000001424 0.57629 4.73186
169 5THZ SAH 0.000007047 0.49392 4.73186
170 2PT9 S4M 0.00003658 0.4846 4.73186
171 2YX1 SFG 0.000003528 0.45864 4.73186
172 2I7C AAT 0.0001017 0.42795 4.73186
173 3VSE SAH 0.00001727 0.426 4.73186
174 2PT9 2MH 0.00008464 0.42532 4.73186
175 5EB4 FAD 0.003415 0.41953 4.73186
176 1FEC FAD 0.006143 0.41452 4.73186
177 4IEE AGS 0.02019 0.41181 4.73186
178 3DC4 ADP 0.02652 0.40979 4.73186
179 2C31 ADP 0.02428 0.40294 4.73186
180 2C31 TZD 0.02497 0.40294 4.73186
181 2BZG SAH 0.0003994 0.46718 4.74138
182 2V7Q ADP 0.01874 0.40947 4.77941
183 5E9W SAH 0.0001059 0.4085 4.80769
184 2PX8 SAH 0.00001068 0.53729 4.83271
185 5K7U SAM 0.004036 0.42237 4.88889
186 4MO2 FDA 0.003576 0.41553 4.8913
187 1P4A PCP 0.01067 0.40677 4.91228
188 5XVQ SAH 0.00009383 0.47658 4.92958
189 4ONQ SFG 0.000001453 0.5759 5.04732
190 1U2Z SAH 0.000004437 0.50028 5.04732
191 4N49 SAM 0.0000649 0.49235 5.04732
192 4UCI SAM 0.00001359 0.46582 5.04732
193 2Q28 ADP 0.001054 0.44436 5.04732
194 4D7E FAD 0.002247 0.42262 5.04732
195 1E1M FAD 0.008104 0.41422 5.04732
196 1BRW URA 0.02828 0.4101 5.04732
197 3CBC DBS 0.02945 0.40969 5.04732
198 3S5W FAD 0.0008257 0.40853 5.04732
199 4TXI FAD 0.00388 0.40822 5.04732
200 2WKQ GTP 0.005327 0.40725 5.04732
201 2BRY FAD 0.004823 0.40566 5.04732
202 4TTQ ATP 0.02463 0.40348 5.04732
203 3FUU ADN 0.00006259 0.49793 5.16605
204 1PZM 5GP 0.007041 0.43533 5.21327
205 4YSX FAD 0.006739 0.40734 5.31915
206 1V59 NAD 0.00009904 0.51667 5.36278
207 4AZT SAM 0.0001687 0.48386 5.36278
208 3UOY FAD 0.006919 0.42535 5.36278
209 3UOY NAP 0.006919 0.42535 5.36278
210 4IHQ ADP 0.03306 0.40073 5.36278
211 3FGZ BEF 0.01472 0.41871 5.46875
212 1ZN7 HSX 0.008232 0.42738 5.55556
213 1ZN7 ADE 0.008232 0.42738 5.55556
214 4FUA PGH 0.02523 0.41094 5.5814
215 5CUQ NSC 0.00001474 0.50495 5.61798
216 5JE0 SAH 0.0001159 0.46761 5.66802
217 5JE0 AZ8 0.0001159 0.46761 5.66802
218 3ICT ADP 0.001222 0.46355 5.67823
219 3ICS ADP 0.001605 0.45779 5.67823
220 1ZMD NAI 0.0006736 0.43436 5.67823
221 3ICR FAD 0.004543 0.41128 5.67823
222 1M7G AV2 0.02375 0.40817 5.6872
223 1KK8 BEF ADP 0.01272 0.40327 5.7554
224 1Q8O MAN MMA 0.01295 0.42689 5.95238
225 2PHT MAN MAN MAN 0.01904 0.41908 5.95238
226 2GND MAN 0.02061 0.41738 5.95238
227 2GNM MAN 0.02553 0.40869 5.95238
228 1Q8S MAN MMA 0.02658 0.40769 5.95238
229 1W7J ADP BEF 0.00785 0.41286 5.96026
230 2R4J 13P 0.003135 0.43107 5.98802
231 1G55 SAH 0.000003116 0.55483 5.99369
232 5MPT SAH 0.00001879 0.52635 5.99369
233 4IA6 EIC 0.008761 0.43821 5.99369
234 1GPM CIT 0.03555 0.40438 5.99369
235 3AD8 NAD 0.003063 0.41481 6.06061
236 3AD8 PYC 0.01377 0.41158 6.06061
237 3AD8 FAD 0.01377 0.41158 6.06061
238 3PFG SAM 0.02585 0.40862 6.08365
239 4YDS ATP 0.03584 0.40282 6.14035
240 4OBW SAM 0.00006115 0.50351 6.22568
241 2NXE SAM 0.00001071 0.53723 6.29921
242 3EGV SAH 0.000029 0.52365 6.29921
243 1F3L SAH 0.000002129 0.54998 6.30915
244 4DCM SAM 0.00002954 0.52926 6.30915
245 1CZA G6P 0.02499 0.40316 6.30915
246 3VYW SAM 0.00000414 0.54352 6.49351
247 2HK9 ATR 0.003799 0.44416 6.54545
248 4GLW NMN 0.02835 0.40546 6.55738
249 1GXU 2HP 0.007319 0.4008 6.59341
250 2J5V PCA 0.01989 0.4002 6.62461
251 1OYY AGS 0.01036 0.42238 6.94006
252 1Q0S SAH 0.00001078 0.51039 6.94981
253 4R6W SAH 0.00002812 0.45311 6.97674
254 5GWX SAR 0.0004078 0.43958 7.04225
255 5GWX SAM 0.0004078 0.43958 7.04225
256 3C6K MTA 0.000147 0.47073 7.08661
257 3C6K SPD 0.000147 0.41063 7.08661
258 1HGX 5GP 0.009873 0.4278 7.10383
259 3NHB ADP 0.02235 0.41747 7.18954
260 3LN9 FLC 0.001837 0.44632 7.19424
261 4IF4 BEF 0.01212 0.4335 7.21154
262 4JLS 3ZE 0.02245 0.41527 7.23684
263 3L9W GSH 0.00009942 0.45141 7.25552
264 3L9W AMP 0.0001139 0.43847 7.25552
265 2WEL K88 0.0345 0.40345 7.25552
266 5BW4 SAM 0.0003674 0.40979 7.49064
267 2P41 SAH 0.000000883 0.58554 7.54098
268 1NW5 SAM 0.000005463 0.54418 7.57098
269 3TKA SAM 0.000005533 0.53813 7.57098
270 4TM3 FAD 0.009084 0.42075 7.57098
271 5KMS NAD 0.007591 0.41834 7.57098
272 1TZD ADP 0.02452 0.41484 7.63636
273 2VN9 GVD 0.01069 0.42603 7.6412
274 5N53 8NB 0.005472 0.4478 7.69231
275 4Q3F TLA 0.01483 0.42831 7.69231
276 2UYQ SAM 0.003607 0.45535 7.74194
277 3X0D SAH 0.000004621 0.54736 7.88644
278 3M6W SAM 0.00002035 0.53679 7.88644
279 5E72 SAM 0.000001368 0.51548 7.88644
280 2NVK NAP 0.02392 0.41217 7.88644
281 4K91 SIN 0.01498 0.40226 7.88644
282 4BWL MN9 0.03687 0.40301 7.89474
283 4PNE SAH 0.00004154 0.46558 7.94702
284 3BXO SAM 0.00002275 0.54097 7.94979
285 2CBZ ATP 0.01192 0.43813 8.01688
286 1XCL SAH 0.0001808 0.42967 8.08511
287 4C4A SAH 0.000000205 0.60644 8.20189
288 3UCL NAP 0.0179 0.40772 8.20189
289 3UCL CYH 0.01633 0.40772 8.20189
290 3UCL FAD 0.01633 0.40772 8.20189
291 3Q87 SAM 0.0001465 0.46861 8.23529
292 1NM5 NAP 0.013 0.40393 8.37438
293 1NM5 NAD 0.01409 0.40318 8.37438
294 3A27 SAM 0.00001311 0.53332 8.45588
295 1QB7 ADE 0.02115 0.40681 8.47458
296 3S1S SAH 0.000007343 0.52217 8.51735
297 4YNU LGC 0.004706 0.4211 8.51735
298 4YNU FAD 0.003882 0.4211 8.51735
299 4X9M FAD 0.003993 0.41673 8.51735
300 2XVM SAH 0.00004079 0.43139 8.54271
301 5FJN FAD 0.00262 0.42631 8.55263
302 5FJN BE2 0.003067 0.42631 8.55263
303 1I9G SAM 0.00000004945 0.62584 8.57143
304 3VC1 SAH 0.00018 0.47222 8.65385
305 3VC1 GST 0.000174 0.40116 8.65385
306 1MFI FHC 0.02344 0.41144 8.77193
307 4LWP SAH 0.000007219 0.46638 8.83281
308 5DNK SAH 0.00000815 0.43379 8.83281
309 1QAN SAH 0.0000008414 0.56691 9.01639
310 1Z3C SA8 0.0001653 0.43813 9.0604
311 3A25 SAM 0.00005238 0.50651 9.14826
312 4CNK FAD 0.00256 0.42256 9.14826
313 3CGD FAD 0.01592 0.41432 9.14826
314 3CGD COA 0.01592 0.41432 9.14826
315 1NF3 GNP 0.004908 0.40574 9.375
316 1PNO NAP 0.00334 0.4082 9.44444
317 5EZ7 FAD 0.002341 0.42524 9.46372
318 4GNI ATP 0.01214 0.40098 9.46372
319 1P1C SAH 0.000049 0.48821 9.54774
320 4IWN GEK 0.00002439 0.47248 9.60699
321 2OOR TXP 0.002547 0.40389 9.77011
322 4KRG SAH 0.000006857 0.55215 9.77918
323 5MW4 5JU 0.000015 0.51668 9.77918
324 3QOX SAH 0.000003145 0.50679 9.77918
325 3GXO SAH 0.0008693 0.46095 9.77918
326 3GWZ SAH 0.000251 0.4119 9.77918
327 2VF7 ADP 0.01986 0.40444 9.77918
328 1WG8 SAM 0.000002716 0.51441 9.82456
329 2O07 MTA 0.0001389 0.45118 9.86842
330 2O07 SPD 0.0001685 0.43591 9.86842
331 1XDS SAM 0.0002134 0.49473 9.89305
332 1O5O U5P 0.004626 0.43539 9.95475
333 4FZV SAM 0.0000008587 0.51359 10.0418
334 5E5U MLI 0.0032 0.43831 10.0503
335 1VJ7 GPX 0.01737 0.41797 10.0946
336 2JJQ SAH 0.0000246 0.53935 10.4101
337 1VJT NAD 0.01063 0.40044 10.4101
338 1ZQ9 SAM 0.00004668 0.50874 10.5263
339 3DXY SAM 0.00004359 0.53402 10.5505
340 4M37 SAH 0.0000002977 0.59936 10.7256
341 4M38 SAH 0.0000002675 0.59446 10.7256
342 1SQF SAM 0.000007862 0.54322 10.7256
343 2IF8 ADP 0.02046 0.41577 10.7256
344 1ZGA SAH 0.0001837 0.49783 10.9244
345 2AOT SAH 0.00007872 0.42704 10.9589
346 1JQD SAH 0.0007565 0.41546 10.9589
347 3LST SAH 0.0001895 0.49718 11.041
348 4PIO AVI 0.0007277 0.40369 11.041
349 4PIO SAH 0.0007253 0.40015 11.041
350 2BES RES 0.01256 0.41421 11.0465
351 3A4T SFG 0.00000038 0.58141 11.3139
352 3ELW SAM 0.00004271 0.40476 11.3333
353 3ELW GP3 0.00004735 0.40037 11.3333
354 1FP1 SAH 0.00008004 0.50913 11.3565
355 3FPF MTA 0.000003594 0.44544 11.4094
356 3FPF TNA 0.000003594 0.44544 11.4094
357 3GDH SAH 0.000000114 0.59029 11.6183
358 5JCA FAD 0.00606 0.41117 11.6197
359 5JCA NDP 0.01429 0.4084 11.6197
360 3G89 SAM 0.000007053 0.56515 11.6466
361 1QZZ SAM 0.0007036 0.47009 11.6719
362 4BV6 FAD 0.005465 0.41208 11.6719
363 3H2B SAH 0.000006546 0.54075 11.8227
364 3NTD FAD 0.006759 0.40527 11.9874
365 2E1A MSE 0.0276 0.4048 12
366 1XTP SAI 0.00002633 0.51982 12.2047
367 3LL5 IP8 0.03597 0.40244 12.4498
368 4POO SAM 0.000002341 0.53721 12.5
369 2F5Z FAD 0.001307 0.43986 12.5
370 3IWD M2T 0.01841 0.41819 12.9032
371 1RYI FAD 0.01023 0.40078 12.9338
372 1JJ7 ADP 0.00386 0.4689 13.0769
373 2HMT NAI 0.001055 0.43682 13.1944
374 5T67 JHZ 0.002487 0.43012 13.2492
375 5T67 SAH 0.001973 0.42936 13.2492
376 2HNK SAH 0.0000007614 0.575 13.3891
377 4QTU SAM 0.00001127 0.53044 13.4615
378 3EGI ADP 0.000009784 0.59003 13.5922
379 1VE3 SAM 0.00004755 0.50838 13.6564
380 5FTW SAH 0.001057 0.44047 13.6719
381 3MQ2 SAH 0.002885 0.4327 13.7615
382 5GM1 SAH 0.0000197 0.50452 13.8047
383 4CVN ADP 0.0322 0.4053 13.8686
384 1L1E SAH 0.0004782 0.45522 13.9373
385 5E1M PRO PRO LYS ARG ILE ALA 0.0003498 0.4528 14.1079
386 5E1M SAH 0.0003498 0.4528 14.1079
387 4Y2H SAH 0.000007862 0.52683 14.1956
388 4Y2H 49K 0.00001046 0.52173 14.1956
389 1KYZ SAH 0.0002255 0.47825 14.1956
390 1RJD SAM 0.001861 0.42994 14.1956
391 2YVJ NAI 0.0037 0.42406 14.1956
392 2YVF FAD 0.01628 0.40528 14.1956
393 2YVF NAD 0.01684 0.40528 14.1956
394 5DM1 SAH 0.0001089 0.47869 14.2322
395 5DM1 5D7 0.000117 0.47869 14.2322
396 5KVA SAM 0.0000003021 0.53785 14.3885
397 1P77 ATR 0.002494 0.46387 14.7059
398 1N2X SAM 0.000005507 0.52732 14.9502
399 3TKY SAH 0.0003856 0.41859 15.142
400 2AG8 NAP 0.003037 0.42082 15.2091
401 3NDJ JHZ 0.002008 0.43494 15.4574
402 3GU3 SAH 0.00001073 0.57121 15.493
403 4RDN 6MD 0.01797 0.42032 15.5689
404 5E8J SAH 0.0001084 0.50872 15.9091
405 1EJ0 SAM 0.000002462 0.56569 16.1111
406 3JWH SAH 0.00000452 0.45087 16.129
407 1OIX GDP 0.002258 0.40387 16.2304
408 3EVF SAH 0.00004251 0.42663 16.2455
409 3EVF GTA 0.00005296 0.41087 16.2455
410 1XTT U5P 0.01123 0.40918 16.6667
411 3HVJ 705 0.000001411 0.55432 16.7421
412 4KRI SAH 0.000003504 0.54662 17.0347
413 4XUC 43G 0.000001661 0.54642 17.4312
414 4XUC SAM 0.000001661 0.54642 17.4312
415 2PWY SAH 0.00000002241 0.6258 17.4419
416 5TVF CGQ 0.009758 0.42806 17.6471
417 2BOS GLA GAL GLC NBU 0.01373 0.42183 17.6471
418 2BOS GLA GAL GLC 0.01811 0.41337 17.6471
419 1KPG SAH 0.0003849 0.45521 17.77
420 4NEC SAH 0.00004812 0.51941 17.803
421 3C3Y SAH 0.000001228 0.5725 18.5654
422 3CTY FAD 0.003701 0.42197 18.612
423 2JBH 5GP 0.005685 0.44009 18.6667
424 2VDV SAM 0.00002622 0.53803 19.1057
425 1TPY SAH 0.0004189 0.45366 19.1638
426 3TLJ SAH 0.0000009475 0.55881 19.3029
427 3T7S SAM 0.00001169 0.46324 19.403
428 1KPH SAH 0.0003674 0.42589 19.5122
429 1FTH A3P 0.02768 0.4088 19.6721
430 3OU2 SAH 0.00001385 0.50136 19.7248
431 3MB5 SAM 0.00000008885 0.60115 20
432 1LSS NAD 0.0001185 0.48115 20
433 5JGL SAM 0.0006681 0.40048 20.4152
434 5FA8 SAM 0.0000005973 0.53318 20.4969
435 3PT9 SAH 0.0000003217 0.60509 20.5047
436 4YMH SAH 0.000000528 0.58181 20.8333
437 3CBG SAH 0.000006712 0.55258 21.1207
438 4LNP VAL PRO PRO PRO ARG PRO PRO PRO PRO GLU 0.0331 0.4007 21.3115
439 4KFU ACP 0.04146 0.40287 22.1698
440 1NV8 SAM 0.00002222 0.49263 22.1831
441 1NV8 MEQ 0.00005093 0.47666 22.1831
442 1L3I SAH 0.0000007692 0.54585 23.4375
443 2WA2 SAM 0.000002849 0.47414 24.6377
444 5N5D SAM 0.0000004135 0.51924 26.1062
445 3DUW SAH 0.0000001038 0.61935 26.4574
446 1G8S MET 0.01657 0.42049 28.2609
447 5LOG SAH 0.000005404 0.48136 33.9056
448 5DX0 SFG 0.00002727 0.48047 35
Pocket No.: 2; Query (leader) PDB : 1DL5; Ligand: SAH; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1dl5.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1DL5; Ligand: SAH; Similar sites found: 54
This union binding pocket(no: 3) in the query (biounit: 1dl5.bio2) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4C3Y FAD 0.004899 0.41405 1.26183
2 4C3Y ANB 0.006577 0.41327 1.26183
3 3E1T FAD 0.005313 0.41448 1.57729
4 3QVP FAD 0.007178 0.40903 1.89274
5 2Q7V FAD 0.002749 0.42444 2.2082
6 1DJL NAP 0.005093 0.40471 2.41546
7 1QO8 FAD 0.005272 0.41369 2.52366
8 1UWK URO 0.0006231 0.4553 2.83912
9 2JB2 PHE 0.001288 0.437 2.83912
10 2JB2 FAD 0.001211 0.437 2.83912
11 3AB1 FAD 0.001709 0.43193 2.83912
12 2IID PHE 0.003452 0.43087 2.83912
13 2IID FAD 0.003452 0.43087 2.83912
14 4IV9 FAD 0.004509 0.41455 2.83912
15 3AYI HCI 0.008865 0.41255 2.91262
16 3AYI FAD 0.008513 0.41255 2.91262
17 1Q9I FAD 0.008959 0.41453 3.15457
18 2CDU FAD 0.007624 0.40103 3.15457
19 1D4D FAD 0.005615 0.41348 3.47003
20 1GET NAP 0.002181 0.44804 3.78549
21 1GET FAD 0.002034 0.44804 3.78549
22 3GDN FAD 0.002459 0.42745 3.78549
23 3GDN HBX 0.003658 0.4274 3.78549
24 3KLJ FAD 0.003788 0.40988 3.78549
25 2Z3Y F2N 0.001833 0.43374 4.10095
26 4GUT FAD 0.002856 0.42852 4.10095
27 4JDR FAD 0.001238 0.43877 4.4164
28 1YQZ FAD 0.003359 0.43437 4.73186
29 2XVE FAD 0.01054 0.41352 4.73186
30 4MO2 FAD 0.004656 0.41191 4.8913
31 4HA6 FAD 0.003792 0.42059 5.04732
32 1E1M NAP 0.008104 0.41422 5.04732
33 1N4W FAD 0.009446 0.40405 5.36278
34 4ITU 1HS 0.007655 0.40694 5.57621
35 4ITU NAI 0.006131 0.40147 5.57621
36 1ZMD FAD 0.001318 0.43971 5.67823
37 4M52 FAD 0.003267 0.42232 5.67823
38 3ICS FAD 0.004135 0.41403 5.67823
39 2R4J FAD 0.003135 0.43107 5.98802
40 3PFG TLO 0.02585 0.40862 6.08365
41 1GY8 NAD 0.003553 0.40846 6.94006
42 3NKS FAD 0.001126 0.436 8.20189
43 3NTA FAD 0.007832 0.40264 8.20189
44 3QFA FAD 0.003378 0.42172 8.62069
45 4J56 FAD 0.006062 0.413 8.77193
46 2HQM FAD 0.000729 0.44936 8.83281
47 3CGD NAD 0.01592 0.41432 9.14826
48 1E6E FAD 0.004173 0.41168 10.9375
49 3G5S FAD 0.005731 0.40716 11.6719
50 2YVJ FAD 0.005624 0.4075 14.1956
51 3NDJ SAH 0.002008 0.43494 15.4574
52 1VQW FAD 0.002192 0.41942 16.4038
53 2GVC FAD 0.002351 0.4182 16.4038
54 4HSU FAD 0.002489 0.42917 23.3333
Pocket No.: 4; Query (leader) PDB : 1DL5; Ligand: SAH; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1dl5.bio2) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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