Receptor
PDB id Resolution Class Description Source Keywords
1F6B 1.7 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF SAR1-GDP COMPLEX CRICETULUS GRISEUS GTPASES N-TERMINAL HELIX MG-CONTAINING COMPLEX PROTEIN TRANSPORT
Ref.: CRYSTAL STRUCTURE OF SAR1-GDP AT 1.7 A RESOLUTION AND THE ROLE OF THE NH2 TERMINUS IN ER EXPORT. J.CELL BIOL. V. 155 937 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:501;
B:502;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:601;
B:602;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
SO4 A:402;
A:404;
A:405;
B:401;
B:403;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1F6B 1.7 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF SAR1-GDP COMPLEX CRICETULUS GRISEUS GTPASES N-TERMINAL HELIX MG-CONTAINING COMPLEX PROTEIN TRANSPORT
Ref.: CRYSTAL STRUCTURE OF SAR1-GDP AT 1.7 A RESOLUTION AND THE ROLE OF THE NH2 TERMINUS IN ER EXPORT. J.CELL BIOL. V. 155 937 2001
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 199 families.
1 2FMX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1F6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 166 families.
1 2FMX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1F6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 141 families.
1 2FMX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1F6B - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1F6B; Ligand: GDP; Similar sites found: 524
This union binding pocket(no: 1) in the query (biounit: 1f6b.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1G16 GDP 0.0000001672 0.63846 None
2 3LN9 FLC 0.003399 0.43711 None
3 4IDN GNP 0.000162 0.42675 1.51515
4 2ZPA ADP 0.0001778 0.49013 2.0202
5 1GXU 2HP 0.0009947 0.45401 2.1978
6 1BO4 COA 0.002046 0.43602 2.38095
7 3B9Q MLI 0.000001467 0.61212 2.52525
8 2OG2 MLI 0.000002135 0.61025 2.52525
9 3FWY ADP 0.00003972 0.51813 2.52525
10 1G3Q ADP 0.00004591 0.50664 2.52525
11 1ION ADP 0.00007166 0.50073 2.52525
12 2BEK ATP 0.0001638 0.4313 2.52525
13 4QRH 0O2 0.007103 0.41665 2.52525
14 4KBF AMP 0.004312 0.40534 2.52525
15 4HUT ATP 0.01468 0.41353 2.6178
16 3KTA AP5 0.0001594 0.45836 2.74725
17 4LC1 GDP 0.000000006423 0.69446 3.0303
18 4WZ6 ATP 0.0000068 0.57763 3.0303
19 3A4M ADP 0.00000215 0.52898 3.0303
20 1V8K ANP 0.0000215 0.52895 3.0303
21 1UJ2 C5P 0.0001274 0.50953 3.0303
22 1UJ2 ADP 0.000139 0.5077 3.0303
23 2PZE ATP 0.0000009403 0.50525 3.0303
24 2Y65 ADP 0.000001434 0.50387 3.0303
25 4ZNL BEF ADP 0.00006352 0.50018 3.0303
26 2Q2Y ADP 0.0005207 0.49703 3.0303
27 2Q2Y MKR 0.0004991 0.49675 3.0303
28 1OFH ADP 0.0001744 0.48291 3.0303
29 1OE0 TTP 0.009665 0.41834 3.0303
30 1WDI CIT 0.01735 0.40236 3.0303
31 3BD9 A3P 0.009022 0.40154 3.0303
32 3H86 AP5 0.0007149 0.48379 3.125
33 4KFU ACP 0.0000007085 0.53337 3.53535
34 2OZE AGS 0.00005139 0.51546 3.53535
35 1BG2 ADP 0.0000003946 0.50365 3.53535
36 1RRC ADP 0.000001562 0.49747 3.53535
37 5IFS ADP 0.00008843 0.49652 3.53535
38 3BOS CDP 0.00004478 0.49651 3.53535
39 1T5C ADP 0.0000009285 0.49138 3.53535
40 4R2I ANP 0.0003208 0.48673 3.53535
41 4HSE ADP 0.0002089 0.47651 3.53535
42 4PX9 ADP 0.0004377 0.47356 3.53535
43 1FP6 ADP 0.0001215 0.46611 3.53535
44 3VX3 ADP 0.0001095 0.45228 3.53535
45 4QOS ADP 0.0007126 0.44238 3.53535
46 2WOJ ADP ALF 0.0000183 0.43474 3.53535
47 5AHO TLA 0.005928 0.43381 3.53535
48 1NST A3P 0.003171 0.42923 3.53535
49 2ZPT A3P 0.03408 0.41523 3.53535
50 1WY7 SAH 0.01783 0.40093 3.53535
51 5HGZ ACO 0.02108 0.4004 3.53535
52 1G7S GDP 0.00000000003827 0.78496 4.0404
53 1SKQ GDP 0.0000000004351 0.76292 4.0404
54 1TQ4 GDP 0.0000000193 0.58046 4.0404
55 1XP8 AGS 0.000006672 0.56115 4.0404
56 1WDT GTP 0.0000004425 0.54233 4.0404
57 2C04 GCP 0.000001004 0.54054 4.0404
58 3KJI ADP 0.00004107 0.51474 4.0404
59 4V03 ADP 0.0000178 0.51214 4.0404
60 3P4X ADP 0.00001593 0.50616 4.0404
61 4E03 ADP 0.00005646 0.50252 4.0404
62 4TTQ ATP 0.00007773 0.48842 4.0404
63 5LB3 ADP 0.000279 0.48298 4.0404
64 5GVR LMR 0.0005117 0.47591 4.0404
65 3T34 GDP 0.000005417 0.47387 4.0404
66 4XTR ADP 0.00004589 0.46488 4.0404
67 3RC3 ANP 0.0007852 0.46132 4.0404
68 5HR5 ADP 0.00007714 0.46099 4.0404
69 4XTR ATP 0.00001884 0.45477 4.0404
70 4XVU ATP 0.00002121 0.45318 4.0404
71 2D2F ADP 0.000009717 0.44111 4.0404
72 5E5U MLI 0.004169 0.43171 4.0404
73 3MGB PAP 0.007611 0.41522 4.0404
74 5KUT GDP 0.0000004925 0.59681 4.2328
75 5MVR ADP 0.000007571 0.55024 4.32099
76 3IIJ ADP 0.000005876 0.53574 4.44444
77 5FG3 GDP 0.00000000004143 0.74499 4.54545
78 3BFV ADP 0.000004481 0.56093 4.54545
79 3DC4 ADP 0.00001287 0.55592 4.54545
80 5I0H ADP BEF 0.00004268 0.52171 4.54545
81 1XKV ATP 0.00003698 0.51398 4.54545
82 2CE7 ADP 0.00005442 0.50624 4.54545
83 4MKG AP5 0.0003861 0.5036 4.54545
84 5G41 AP5 0.0005869 0.49999 4.54545
85 3QKT ANP 0.0001919 0.49713 4.54545
86 1P9B GDP 0.00002515 0.48491 4.54545
87 2DPY ADP 0.0004316 0.48034 4.54545
88 4IOK XPO 0.0004361 0.48001 4.54545
89 4IOK ADP 0.0006094 0.47827 4.54545
90 5XDR ADP 0.0002153 0.4759 4.54545
91 2FAH GDP 0.0003182 0.47346 4.54545
92 4JLV ADP 0.0001864 0.4616 4.54545
93 1JJV ATP 0.00007409 0.46047 4.54545
94 3FKQ ATP 0.0001634 0.45386 4.54545
95 1YTM ATP 0.00006404 0.45234 4.54545
96 2ZE7 AMP 0.002042 0.4495 4.54545
97 2ZE7 DST 0.002207 0.4495 4.54545
98 1IN4 ADP 0.0001014 0.4481 4.54545
99 3B7G ANP 0.001399 0.43868 4.54545
100 1OYY AGS 0.00181 0.43853 4.54545
101 5MZN ADP 0.006624 0.42152 4.54545
102 3IUY AMP 0.006014 0.40964 4.54545
103 3CV2 OXL 0.01461 0.40234 4.54545
104 1DL5 SAH 0.02412 0.40029 4.54545
105 1KO8 6PG 0.0001013 0.50161 4.57143
106 3ZQ6 ADP ALF 0.00001604 0.55312 4.62963
107 2KIN ADP 0.0000004527 0.50086 5
108 5I34 GDP 0.00001173 0.53377 5.05051
109 5GJC ATP 0.0000463 0.51331 5.05051
110 3EWA ANP 0.00002517 0.50726 5.05051
111 4PFO ADP 0.0001319 0.5069 5.05051
112 2GDJ ANP 0.0000953 0.49858 5.05051
113 4FRZ ADP 0.000006904 0.49336 5.05051
114 1R6B ADP 0.000108 0.48962 5.05051
115 3EZ2 ADP 0.000401 0.47539 5.05051
116 2FNA ADP 0.00001908 0.45534 5.05051
117 1IHU AF3 0.0000425 0.44814 5.05051
118 3DZD ADP 0.0004414 0.44456 5.05051
119 1IHU ADP 0.00003841 0.44258 5.05051
120 2ZTS ADP 0.0001436 0.44075 5.05051
121 2F3R G5P 0.005675 0.43649 5.05051
122 4ZG4 VO4 ADP 0.00009154 0.42476 5.05051
123 3FYH ADP 0.0000801 0.41754 5.05051
124 2D7D ADP 0.003189 0.41584 5.05051
125 3R7F CP 0.014 0.40868 5.05051
126 5J1S ATP 0.0002995 0.40495 5.05051
127 3QXC ATP 0.0001273 0.40875 5.3719
128 5M04 GDP 0.0000000000009999 0.89012 5.55556
129 3WYA GDP 0.0000000001012 0.77911 5.55556
130 1YRB GDP 0.000000004123 0.65315 5.55556
131 2J0V GDP 0.0000004145 0.60024 5.55556
132 1LVG ADP 0.0000005813 0.55088 5.55556
133 4YDS ATP 0.00006999 0.51948 5.55556
134 2BIF SIN 0.0003361 0.51018 5.55556
135 2BIF ANP 0.0001971 0.51018 5.55556
136 4FCW ADP 0.00008665 0.494 5.55556
137 4R43 GDP 0.0001469 0.48975 5.55556
138 2VF7 ADP 0.000119 0.48769 5.55556
139 4LJ9 ACP 0.0002427 0.46577 5.55556
140 4WEI GLC GAL 0.001624 0.45636 5.55556
141 2B8T THM 0.003141 0.43531 5.55556
142 2V3V MGD 0.0318 0.42708 5.55556
143 4OI4 ATP 0.0002149 0.41655 5.55556
144 1AQU A3P 0.01131 0.40335 5.55556
145 3OEN GLU 0.0114 0.40089 5.55556
146 4U5X GNP 0.0000006052 0.60613 5.61798
147 1XX6 ADP 0.000471 0.45101 5.75916
148 1W7J ADP BEF 0.0001116 0.45464 5.96026
149 1F2U ATP 0.0003449 0.48857 6.04027
150 4LPS GDP 0.0000002389 0.61119 6.06061
151 3NHB ADP 0.000001776 0.60842 6.06061
152 5L3V GDP 0.0000006108 0.57668 6.06061
153 2NCD ADP 0.000007377 0.57543 6.06061
154 4H1V GNP 0.000003999 0.51925 6.06061
155 4D81 ADP 0.00006946 0.47496 6.06061
156 4A4Z ANP 0.001019 0.45026 6.06061
157 4GOX A3P 0.0003077 0.41352 6.06061
158 1J99 AND 0.03127 0.4007 6.06061
159 5H56 TYD 0.00003248 0.54392 6.15385
160 5H56 ADP 0.00003248 0.54392 6.15385
161 4BQS ADP 0.00001112 0.5424 6.25
162 4QM7 GTP 0.00004025 0.49846 6.43275
163 1Y63 ADP 0.000002271 0.5748 6.52174
164 1DAR GDP 0.0000000001031 0.7476 6.56566
165 4PPF FLC 0.0000000854 0.69493 6.56566
166 1D2E GDP 0.000000001047 0.67791 6.56566
167 2W58 ADP 0.000001536 0.62447 6.56566
168 2ZR9 DTP 0.000002492 0.5729 6.56566
169 1NJF ADP 0.00005231 0.5151 6.56566
170 1NJF AGS 0.0001026 0.50596 6.56566
171 1CR1 TTP 0.00009858 0.50453 6.56566
172 2B8W ALF 5GP 0.0002359 0.49282 6.56566
173 4IEE AGS 0.0002002 0.48993 6.56566
174 5WRJ A3P 0.004216 0.43267 6.56566
175 5EP2 AZU 0.007081 0.41671 6.56566
176 5MEX SZZ 0.0294 0.40622 6.56566
177 5MEX PAP 0.01426 0.40048 6.56566
178 4CVN ADP 0.00001776 0.54898 6.56934
179 3H4S ADP 0.000002677 0.49239 6.66667
180 2VOH CIT 0.002956 0.43436 7.00637
181 3E70 GDP 0.000001228 0.57865 7.07071
182 1JWY GDP 0.0000002702 0.57679 7.07071
183 2OFW ADX 0.00001339 0.57598 7.07071
184 2QEN ADP 0.000004812 0.56096 7.07071
185 1NN5 ANP 0.00002327 0.55281 7.07071
186 1XMV ADP 0.00001236 0.53273 7.07071
187 2QZ4 ADP 0.000021 0.50965 7.07071
188 1UKZ ADP 0.0002336 0.50652 7.07071
189 1JWY ADP 0.0001284 0.48619 7.07071
190 5N69 ADP 0.0001104 0.46578 7.07071
191 3DKP ADP 0.0006733 0.44583 7.07071
192 2C9O ADP 0.0001774 0.4331 7.07071
193 1X6V ADP 0.000008052 0.42571 7.07071
194 4G86 BNT 0.01342 0.42342 7.07071
195 1NN5 2DT 0.04048 0.41753 7.07071
196 1KUV CA5 0.02269 0.40655 7.07071
197 4OHY ANP 0.0002884 0.40548 7.07071
198 1SVI GDP 0.00000001282 0.64294 7.17949
199 3MD0 GDP 0.000000000243 0.77511 7.57576
200 2C77 GNP 0.000000001208 0.7367 7.57576
201 2RCN GDP 0.0000000003247 0.72469 7.57576
202 2C78 GNP 0.000000000518 0.62188 7.57576
203 4MKF AP5 0.0004528 0.5013 7.57576
204 2RGX AP5 0.00063 0.49516 7.57576
205 5LTJ ADP 0.00009751 0.49166 7.57576
206 5FTB ANP 0.0003796 0.45466 7.57576
207 5LTJ BEF 0.003837 0.44654 7.57576
208 5FHD ADP ALF 0.0001594 0.4302 7.57576
209 3VM7 GLC 0.006861 0.42403 7.57576
210 1K6M AGS 0.0001304 0.41841 7.57576
211 5K2M ADP 0.008595 0.41778 7.57576
212 2PEZ DAT 0.000007674 0.57835 7.82123
213 2PEZ GGZ 0.000007674 0.40973 7.82123
214 4RD0 GDP 0.0000000005788 0.61889 8.08081
215 4HI0 GDP 0.00000002736 0.5743 8.08081
216 4P4T GDP 0.0000002337 0.55091 8.08081
217 1OS1 ATP 0.0001582 0.50852 8.08081
218 1OS1 PYR 0.0001711 0.50852 8.08081
219 5IRN ADP 0.00004096 0.4838 8.08081
220 2XAU ADP 0.0001773 0.48259 8.08081
221 2OBM ADP 0.001091 0.4685 8.08081
222 1FNN ADP 0.00008297 0.45075 8.08081
223 1H65 GDP 0.00006032 0.44806 8.08081
224 5K5Z ANP 0.0001625 0.41802 8.08081
225 1G3M PCQ 0.02233 0.4133 8.08081
226 4YS0 ADP 0.002139 0.4065 8.08081
227 1CJW COT 0.01533 0.41131 8.43373
228 2XT3 ADP 0.000002145 0.60991 8.58586
229 1M7G ADX 0.000008372 0.57467 8.58586
230 1M7G AV2 0.0000006994 0.56366 8.58586
231 1M7G ADP 0.00001242 0.56251 8.58586
232 5TSH ADP 0.0000383 0.53825 8.58586
233 5TSH ANP 0.00002153 0.52893 8.58586
234 5L3R GCP 0.0000009097 0.49125 8.58586
235 5VGR GDP 0.0000372 0.47806 8.58586
236 5M7P ADP 0.000199 0.4406 8.58586
237 2FSH ANP 0.002055 0.41716 8.58586
238 3TBK ANP 0.002054 0.4109 8.58586
239 2J5V PCA 0.03089 0.40415 8.58586
240 5H67 ATP 0.008271 0.40328 8.75
241 2CJW GDP 0.0000000001989 0.76532 8.85417
242 2CBZ ATP 0.000001962 0.61876 9.09091
243 2PL3 ADP 0.0005963 0.46708 9.09091
244 2VHJ ADP 0.01318 0.40389 9.09091
245 2ZEJ GDP 0.00000004115 0.67865 9.23913
246 3REF GDP 0.0000008697 0.5142 9.27835
247 4WOP CTP 0.001683 0.40092 9.33333
248 3CNL GNP 0.0000000001095 0.7918 9.59596
249 2QN6 GDP 0.0000000001102 0.79167 9.59596
250 2HF9 GSP 0.0000000341 0.59847 9.59596
251 4ZKD GDP 0.0000000007467 0.56656 9.59596
252 3IO3 ADP 0.00003252 0.52481 9.59596
253 2JLR ANP 0.00009067 0.49877 9.59596
254 2CHG ANP 0.00005186 0.47008 9.59596
255 5J1J ANP 0.000008202 0.46576 9.59596
256 2HT6 GDP 0.00000000003918 0.74485 9.77011
257 5BQ5 ADP BEF 0.0000305 0.50248 10.0529
258 5L3W GDP 0.0000068 0.53176 10.101
259 4LYA ATP 0.00008739 0.49383 10.101
260 5L3S GNP 0.00000184 0.48301 10.101
261 3Q9L ATP 0.0001027 0.45995 10.101
262 1VHT BA3 0.0009782 0.43815 10.101
263 2IXE ATP 0.0001032 0.42705 10.101
264 5L3S G 0.01306 0.41174 10.101
265 1W5T ADP 0.001999 0.40645 10.101
266 1W5T ANP 0.001153 0.40269 10.101
267 4PSW COA 0.01154 0.40094 10.5263
268 5KSP GDP 0.0000015 0.57466 10.6061
269 5KSZ GCP 0.000005746 0.53584 10.6061
270 1F9V ADP 0.000006458 0.49466 10.6061
271 1U0J ADP 0.0001008 0.47095 10.6061
272 4P32 ADP 0.00004344 0.43887 10.6061
273 2VB6 ADP BEF 0.00007335 0.42777 10.7383
274 2IYL GDP 0.000001402 0.58463 10.9155
275 3TK1 GDP 0.0000000004453 0.77691 11.1111
276 4AG5 ADP 0.00000392 0.58937 11.1111
277 3FB4 AP5 0.0002447 0.51362 11.1111
278 5IRR GSP 0.00004118 0.4551 11.1111
279 1Z6T ADP 0.0002063 0.4446 11.1111
280 1S3G AP5 0.0002097 0.51701 11.6162
281 4TMK T5A 0.002243 0.45778 11.6162
282 1T8U UAP SGN IDS SGN 0.005136 0.44672 11.6162
283 2QG6 NMN 0.00004201 0.41776 11.6162
284 1T8U A3P 0.006758 0.41767 11.6162
285 1KK1 GNP 0.0000000001735 0.71994 12.1212
286 1W0J ADP 0.00001719 0.5323 12.1212
287 2V7Q ATP 0.00001358 0.51725 12.1212
288 1SQ5 ADP 0.000059 0.50165 12.1212
289 1G41 ADP 0.0001018 0.4792 12.1212
290 1W0J ADP BEF 0.0005928 0.46554 12.1212
291 2V7Q ADP 0.0006607 0.45909 12.1212
292 2CK3 ANP 0.0008666 0.41612 12.1212
293 3ZL8 ADP 0.01224 0.40543 12.1212
294 1ZUI SKM 0.0001088 0.52595 12.5
295 3EC1 GDP 0.000000002596 0.70111 12.6263
296 5GOE GDP 0.000000007677 0.65932 12.6263
297 2IS6 ADP 0.0003455 0.45826 12.6263
298 3BFX A3P 0.0013 0.40989 12.6263
299 1GOJ ADP 0.0000003478 0.65835 13.1313
300 2WHX ADP 0.00001261 0.5642 13.1313
301 1G6O ADP 0.0001739 0.46828 13.1313
302 4RZ3 ADP 0.0001055 0.46092 13.1313
303 2XTN GTP 0.00002476 0.45741 13.1313
304 3ZS9 ADP ALF 0.00002249 0.43271 13.1579
305 4J0Q GDP 0.00000000002878 0.81978 13.6364
306 4WZA ADP 0.0005058 0.51539 13.6364
307 4WZA ACP 0.0005745 0.51247 13.6364
308 4NCN GTP 0.000000003577 0.72106 14.1414
309 2AWN ADP 0.0000001177 0.70567 14.1414
310 1G7C 5GP 0.0000001315 0.6329 14.1414
311 4TMZ GSP 0.000000003427 0.58254 14.1414
312 5HCN GCP 0.00000001628 0.6646 14.6465
313 3UIE ANP 0.00001653 0.51316 14.6465
314 1MKY GDP 0.0000000001766 0.73672 15.1515
315 4IHQ ADP 0.0002247 0.45807 15.1515
316 1R0X ATP 0.0003786 0.4492 15.1515
317 3Q85 GNP 0.0000000003451 0.72398 15.9763
318 3U6B GDP 0.00000000003821 0.81384 16.1616
319 5JBQ GDP 0.0000000001065 0.77807 16.1616
320 4G5G GDP 0.0000000001212 0.77542 16.1616
321 4P3Y GDP 0.00000000003414 0.74831 16.1616
322 1D8T GDP 0.0000000001436 0.74093 16.1616
323 3U6K GDP 0.0000000007059 0.73949 16.1616
324 2HCJ GDP 0.00000000005846 0.73871 16.1616
325 2BVN GNP 0.00000000022 0.70399 16.1616
326 4PC3 GDP 0.000000004873 0.65137 16.1616
327 1F5N GNP 0.0001091 0.41117 16.1616
328 1RYH GNP 0.0000001467 0.62473 17.1717
329 2GK6 ADP 0.007513 0.4188 17.1717
330 2XTZ GSP 0.0000000008198 0.75802 17.6768
331 1CS4 GSP 0.000000001096 0.54711 17.6768
332 1AZT GSP 0.000000001692 0.53274 17.6768
333 2WKQ GTP 0.000001624 0.49708 17.6768
334 3FVQ ATP 0.0001861 0.42686 17.6768
335 3SBD GNP 0.000002028 0.47656 18.1818
336 1I4D GDP 0.0000001982 0.63476 18.2292
337 1E96 GTP 0.000002428 0.47724 18.2292
338 1MH1 GNP 0.0000004878 0.48672 18.2796
339 5CK5 GDP 0.0000000002733 0.77266 18.6869
340 1DS6 GDP 0.000000104 0.61641 18.75
341 2W2X GSP 0.000000528 0.61188 18.9189
342 1G4U GDP 0.00000121 0.52832 19.0217
343 4XGU ADP 0.000007248 0.50578 19.1919
344 1NY5 ADP 0.001381 0.44611 19.1919
345 1HE1 GDP 0.000001171 0.51896 19.3182
346 1HE1 AF3 0.01526 0.40742 19.3182
347 2FJU GSP 0.0000009165 0.60056 19.6629
348 1YQT ADP 0.000009642 0.48758 19.697
349 3QF7 ANP 0.00006564 0.51047 20
350 3LRE ADP 0.0000005621 0.64632 20.202
351 1G8S MET 0.01665 0.40607 20.202
352 1B7T ADP 0.000259 0.46137 20.7071
353 1KK8 BEF ADP 0.0001123 0.45474 20.7071
354 3CPJ GDP 0.00000002856 0.66134 21.2121
355 2ODE ALF GDP 0.000000003034 0.52506 21.2121
356 5JCZ GDP 0.00000004885 0.57907 21.229
357 4LX0 BEF GDP 0.00000003358 0.68293 21.4689
358 1HTW ADP 0.000002325 0.56595 21.519
359 3RWO GDP 0.00000001382 0.69885 21.6216
360 3GJ0 GDP 0.0000000008968 0.73461 21.7172
361 4HAT GNP 0.000000003926 0.73085 21.7172
362 3GJ7 GDP 0.000000001088 0.73068 21.7172
363 3CH5 GDP 0.0000000005954 0.73039 21.7172
364 5UWT GNP 0.000000003851 0.72849 21.7172
365 3GJ4 GDP 0.000000001358 0.72615 21.7172
366 5BXQ GDP 0.0000000008327 0.72372 21.7172
367 3GJ8 GDP 0.0000000008358 0.72365 21.7172
368 3GJ5 GDP 0.000000001001 0.72005 21.7172
369 3GJ3 GDP 0.0000000006278 0.71263 21.7172
370 3GJX GTP 0.00000000895 0.71075 21.7172
371 5KDO GDP 0.000000002229 0.61187 21.7172
372 1GP2 GDP 0.000000005121 0.57326 21.7172
373 5UWH GNP 0.0000000032 0.54331 21.7172
374 5UWI GNP 0.000000003322 0.54295 21.7172
375 5DHF GNP 0.000000003545 0.54243 21.7172
376 5DIF GNP 0.000000003603 0.54228 21.7172
377 5UWR GNP 0.000000003622 0.54216 21.7172
378 5UWQ GNP 0.000000003799 0.54181 21.7172
379 5UWW GNP 0.000000003985 0.54135 21.7172
380 5UWU GNP 0.000000003936 0.54125 21.7172
381 5UWJ GNP 0.000000004034 0.54091 21.7172
382 5UWO GNP 0.000000004226 0.54051 21.7172
383 1IBR GNP 0.000000005589 0.53798 21.7172
384 5UWP GNP 0.000000003685 0.53155 21.7172
385 5DI9 GNP 0.000000004343 0.52974 21.7172
386 5UWS GNP 0.000000004934 0.52863 21.7172
387 2VVG ADP 0.0000004036 0.50364 21.7172
388 4C4P GNP 0.00000001538 0.69936 21.9653
389 2HV8 GTP 0.00000002312 0.68808 22.093
390 2D7C GTP 0.0000000184 0.69286 22.1557
391 1SVK ALF GDP 0.000000006058 0.72686 22.2222
392 3VMF GTP 0.000000002625 0.73365 22.7273
393 3WXM GTP 0.000000006224 0.71556 22.7273
394 3WYF GTP 0.000000003052 0.73617 23.2323
395 3M1I GTP 0.000000004108 0.72713 23.2323
396 3ZFD ANP 0.00004042 0.5122 23.2323
397 1PUJ GNP 0.0000000006527 0.73752 24.2424
398 3DEF GDP 0.00002129 0.49891 24.7475
399 3WY9 GDP 0.00000000007929 0.79856 25
400 1Y3A GDP 0.000000001744 0.73596 25.2525
401 1BH2 GSP 0.000000004699 0.72971 25.2525
402 2G77 GDP 0.000000001391 0.65323 25.2525
403 2OM2 GDP 0.000000002275 0.61171 25.2525
404 1GWN GTP 0.0000006834 0.60659 25.2525
405 1FQJ GDP 0.000000001959 0.58438 25.2525
406 1FQK GDP 0.000000003162 0.57885 25.2525
407 2F9L GDP 0.00000003802 0.54893 25.2525
408 2G77 AF3 0.005551 0.42958 25.2525
409 1FQK ALF 0.01432 0.40845 25.2525
410 1FQJ ALF 0.01752 0.4037 25.2525
411 3WYG GTP 0.000000001592 0.54008 25.2747
412 3Q72 GNP 0.00000000418 0.66296 25.3012
413 4DCT GDP 0.00000000231 0.70343 26.2626
414 2GCO GNP 0.0000009909 0.59302 26.2626
415 2GCN GDP 0.000001618 0.5916 26.2626
416 5JCP GDP ALF 0.000001714 0.53551 26.2626
417 1ZCB GDP 0.000000001135 0.75121 26.7677
418 3AB3 GDP 0.0000000007878 0.74548 26.7677
419 5SZH GNP 0.000000009531 0.70943 26.7677
420 3CX8 GSP 0.0000000009569 0.53869 26.7677
421 1OW3 GDP 0.000002689 0.57277 26.943
422 3ZIA ADP 0.00002417 0.52543 26.9841
423 3ZIA ATP 0.00002085 0.52233 26.9841
424 3TKL GTP 0.00000002312 0.54317 27.0408
425 3T5G GDP 0.000000007549 0.68414 27.0718
426 1M7B GTP 0.0000003982 0.53683 27.1739
427 1TAD GDP 0.000000004076 0.73273 27.2727
428 1TAD ALF 0.000000004076 0.52226 27.2727
429 3RLF ANP 0.0002412 0.40729 27.2727
430 1GOT GDP 0.000000003183 0.59214 27.3973
431 2BME GNP 0.00000003029 0.68241 27.4194
432 1XTQ GDP 0.000000007665 0.70524 27.6836
433 1WF3 GNP 0.000000001433 0.74929 27.7778
434 5IRC GDP 0.000008344 0.54379 27.957
435 4KVG GTP 0.00000003759 0.6779 27.9762
436 4D0G GTP 0.000000007053 0.58456 28
437 4D0N GDP 0.0000001899 0.60446 28.1081
438 5HPY GDP 0.000001521 0.58433 28.1081
439 4HDQ GNP 0.0000001448 0.65218 28.1437
440 4HDO GNP 0.00000009361 0.50553 28.1437
441 1GUA GNP 0.00000009758 0.50522 28.1437
442 3X1Z GNP 0.00000009567 0.49671 28.1437
443 1KMQ GNP 0.000002634 0.5841 28.2609
444 1CXZ GSP 0.000001842 0.58893 28.5714
445 3SFV GDP 0.00000002451 0.6749 28.7293
446 4XOI GTP 0.000004148 0.47721 28.8889
447 4XSH GSP 0.000001069 0.53268 29.0503
448 2GJ8 ALF GDP 0.000000000617 0.5647 29.0698
449 3LXR GDP 0.0000005623 0.57961 29.1892
450 4B47 GDP 0.000000000009005 0.8441 29.2929
451 1TX4 ALF GDP 0.000004117 0.48562 29.3785
452 3NKV GNP 0.00000002486 0.53126 30.2857
453 3E5H GNP 0.00000007377 0.66377 30.3371
454 1U8Z GDP 0.00000003168 0.54933 30.3571
455 1EK0 GNP 0.00000008555 0.51575 30.5882
456 2FH5 GTP 0.0000000004752 0.63495 30.8081
457 3PQC GDP 0.0000002521 0.59515 32.8205
458 1NF3 GNP 0.000002554 0.47569 33.8462
459 4DID GDP 0.0000003616 0.60295 34.1969
460 4ITR GDP 0.000001083 0.59425 34.555
461 2NGR GDP 0.0000006687 0.59073 34.555
462 1A4R GNH 0.0000005909 0.55416 34.555
463 1A4R GDP 0.000000412 0.548 34.555
464 1GRN GDP 0.000002351 0.52998 34.555
465 2WMO GTP 0.0000005979 0.57837 34.7368
466 2EW1 GNP 0.00000002461 0.68105 34.8485
467 5UQW GDP 0.00000002629 0.54212 34.9206
468 5WDR GNP 0.0000001332 0.50343 35.0877
469 3BC1 GNP 0.00000002006 0.69105 35.3846
470 1X1R GDP 0.00000009732 0.50433 35.3933
471 4DSU GDP 0.00000002194 0.69188 35.4497
472 5TB5 GDP 0.00000001159 0.65207 35.6757
473 5TAR GDP 0.00000001132 0.63432 35.6757
474 2EFE GNH 0.00000002657 0.61979 35.9116
475 1TU3 GNP 0.00000001177 0.70222 36.2573
476 4YC7 GNP 0.0000009295 0.60305 36.4641
477 1KY3 GDP 0.00000003255 0.6587 36.8132
478 3MJH GTP 0.00000001943 0.53821 36.9048
479 4DKX GDP 0.0000000003838 0.75192 37.8788
480 5O2T GSP 0.00000002922 0.51948 39.0533
481 3TNF GNP 0.00000002173 0.69469 39.0805
482 3QBT GNP 0.00000001961 0.53631 39.0805
483 4LHW GNP 0.0000000423 0.5244 39.0805
484 5XCO GDP 0.000000009113 0.68437 39.1813
485 2A9K GDP 0.0000000215 0.67075 39.5722
486 2C5L GTP 0.00000003044 0.51874 39.8844
487 3T1O GDP 0.000000003222 0.70119 39.899
488 3T12 GDP ALF 0.000000005413 0.58657 39.899
489 1KAO GDP 0.00000001261 0.68157 40.1198
490 4K81 GTP 0.0000000523 0.67614 40.3509
491 5UFQ GNP 0.000000004451 0.5558 40.3614
492 1D5C GDP 0.000000004751 0.6303 40.7407
493 4M9Q GNP 0.00000000001826 0.66627 40.9091
494 5E95 GDP 0.00000004372 0.59406 41.0714
495 1LFD GNP 0.00000006302 0.66707 41.3174
496 2UZI GTP 0.00000003366 0.68021 41.5663
497 3KUD GDP 0.00000005654 0.5631 41.5663
498 1WQ1 GDP 0.00000006834 0.53715 41.5663
499 3DDC GNP 0.00000008188 0.50675 41.5663
500 1CLU DBG 0.0000001536 0.41061 41.5663
501 1WQ1 AF3 0.01966 0.40436 41.5663
502 2X77 GDP 0.00000000003941 0.78438 41.7989
503 3RAB GNP 0.00000001386 0.69879 42.0118
504 1NVV GNP 0.00000005317 0.67326 42.1687
505 1NVU GTP 0.00000005641 0.67201 42.1687
506 3DOE GTP 0.00000000001336 0.65395 42.1875
507 1ZC3 GNP 0.00000003552 0.68174 42.2857
508 1UAD GNP 0.00000006166 0.66753 42.2857
509 2Y8E GNP 0.000000008604 0.54603 42.4581
510 2FFQ GSP 0.000000008665 0.71143 43.2749
511 4ZI2 GNP 0.00000000001622 0.66919 44.7368
512 4GOJ GNP 0.000000000008198 0.84326 44.9735
513 4BAS GNP 0.000000003426 0.7187 45.9596
514 1UPT GTP 0.0000000005748 0.75554 46.1988
515 4YLG GDP 0.00000000002567 0.71992 46.2428
516 2A5F GTP 0.00000000009864 0.79903 46.2857
517 1FZQ GDP 0.0000000000003109 0.85673 46.9613
518 2J59 GTP 0.00000000004681 0.63592 46.988
519 4KAX GTP 0.00000000005304 0.80473 47.3373
520 3PCR GTP 0.0000000001534 0.62159 48.1481
521 2W83 GTP 0.00000000003095 0.64061 48.4848
522 5EE5 GTP 0.000000000357 0.62626 48.538
523 1MR3 G3D 0.000000000007236 0.81808 48.6188
524 3N5C GDP 0.000000000001152 0.87038 49.3827
525 3AQ4 GDP 0.000000000001572 0.84844 50
526 1KSH GDP 0.0000000000442 0.80461 50
Pocket No.: 2; Query (leader) PDB : 1F6B; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1f6b.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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