-->
Receptor
PDB id Resolution Class Description Source Keywords
1HFU 1.68 Å EC: 1.10.3.2 TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS AT 1.68 A RESOLUTION COPRINUS CINEREUS OXIDOREDUCTASE LACCASE BLUE MULTI-COPPER OXIDASE TYPE-2 COPPER DEPLETED SIGNAL GLYCOPROTEIN
Ref.: STRUCTURE OF THE LACCASE FROM COPRINUS CINEREUS AT 1.68A RESOLUTION: EVIDENCE FOR DIFFERENT TYPE 2 CU-DEPLETED ISOFORMS ACTA CRYSTALLOGR.,SECT.D V. 57 333 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CU A:701;
A:702;
A:703;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
63.546 Cu [Cu+2...
MAN MAN A:600;
Valid;
none;
submit data
342.297 n/a O(CC1...
NAG NDG A:602;
Valid;
none;
submit data
408.404 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1HFU 1.68 Å EC: 1.10.3.2 TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS AT 1.68 A RESOLUTION COPRINUS CINEREUS OXIDOREDUCTASE LACCASE BLUE MULTI-COPPER OXIDASE TYPE-2 COPPER DEPLETED SIGNAL GLYCOPROTEIN
Ref.: STRUCTURE OF THE LACCASE FROM COPRINUS CINEREUS AT 1.68A RESOLUTION: EVIDENCE FOR DIFFERENT TYPE 2 CU-DEPLETED ISOFORMS ACTA CRYSTALLOGR.,SECT.D V. 57 333 2001
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1HFU - MAN MAN n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1HFU - MAN MAN n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1HFU - MAN MAN n/a n/a
2 1KYA - XYD C8 H11 N Cc1ccc(c(c....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MAN MAN; Similar ligands found: 178
No: Ligand ECFP6 Tc MDL keys Tc
1 BGC GLA 1 1
2 GAL GLC 1 1
3 GLA BGC 1 1
4 BGC GLC 1 1
5 GLA GLC 1 1
6 LAK 1 1
7 GAL GAL 1 1
8 GLC BGC 1 1
9 MLB 1 1
10 MAN BMA 1 1
11 MAN MAN 1 1
12 BMA GLA 1 1
13 BMA MAN 1 1
14 GLC GLC 1 1
15 GLA BMA 1 1
16 BMA MAN MAN 0.953488 1
17 GLC GLC GLC GLC GLC BGC 0.953488 1
18 MAN MAN MAN 0.953488 1
19 GLC GLC GLC 0.953488 1
20 GLC GLC GLC GLC BGC 0.953488 1
21 AHR AHR 0.75 0.857143
22 FUB AHR 0.75 0.857143
23 MAN MAN MAN MAN 0.732143 1
24 MAN MAN BMA MAN 0.732143 1
25 AHR AHR AHR AHR AHR AHR 0.702128 0.857143
26 FUB AHR AHR 0.702128 0.857143
27 MAN BMA MAN 0.672727 1
28 MAN MMA 0.66 0.942857
29 GLC GLC GLC BGC 0.633333 1
30 M5S 0.606557 1
31 MAN BMA MAN MAN MAN 0.606557 1
32 MAN MAN MAN BMA MAN 0.575758 1
33 BMA BMA GLA BMA BMA 0.546875 1
34 MAN MMA MAN 0.540984 0.942857
35 MAN MAN MAN MAN MAN MAN MAN 0.535211 1
36 RAF 0.515625 0.891892
37 GIV 0.511628 0.848485
38 GLA 0.511628 0.848485
39 WOO 0.511628 0.848485
40 MAN 0.511628 0.848485
41 GAL 0.511628 0.848485
42 GLC 0.511628 0.848485
43 BGC 0.511628 0.848485
44 GXL 0.511628 0.848485
45 BMA 0.511628 0.848485
46 ALL 0.511628 0.848485
47 STW 0.507692 0.891892
48 MAN MAN MAN BMA MAN MAN MAN 0.5 0.942857
49 BMA MAN MAN MAN MAN 0.485294 1
50 NGB 0.485294 0.622642
51 4CQ 0.483871 0.970588
52 WZ2 0.477612 0.868421
53 LBT 0.472727 1
54 N9S 0.472727 1
55 CBI 0.472727 1
56 MAB 0.472727 1
57 LAT 0.472727 1
58 CBK 0.472727 1
59 B2G 0.472727 1
60 BGC BMA 0.472727 1
61 GLC GAL 0.472727 1
62 GLA GLA 0.472727 1
63 BMA GAL 0.472727 1
64 GLA GAL 0.472727 1
65 MAL 0.472727 1
66 GAL BGC 0.472727 1
67 BGC GAL 0.472727 1
68 NAG MAN MAN 0.472222 0.733333
69 RGG 0.471698 0.882353
70 SUC GLA 0.471429 0.891892
71 DMJ MAN 0.466667 0.695652
72 NOJ BGC 0.466667 0.695652
73 WZ3 0.463768 0.916667
74 DEG 0.462963 0.769231
75 IFM MAN 0.459016 0.711111
76 EMZ 0.458333 0.783784
77 M6P 0.45098 0.674419
78 G6P 0.45098 0.674419
79 BG6 0.45098 0.674419
80 M6D 0.45098 0.674419
81 A6P 0.45098 0.674419
82 BGP 0.45098 0.674419
83 AHR AHR AHR 0.45 0.805556
84 EBG 0.446429 0.837838
85 M3M 0.446429 1
86 LB2 0.446429 1
87 NGR 0.446429 1
88 EBQ 0.446429 0.789474
89 MAN GLC 0.446429 1
90 MT7 0.440678 1
91 MAN BMA BMA BMA BMA BMA 0.440678 1
92 DXI 0.440678 1
93 GLC GAL GAL 0.440678 1
94 BGC BGC BGC BGC 0.440678 1
95 GLC BGC BGC BGC BGC BGC 0.440678 1
96 GLC BGC GLC 0.440678 1
97 CEX 0.440678 1
98 GLC BGC BGC BGC BGC 0.440678 1
99 BGC GLC GLC GLC GLC GLC GLC 0.440678 1
100 MLR 0.440678 1
101 BGC BGC BGC BGC BGC 0.440678 1
102 CE5 0.440678 1
103 MAN BMA BMA BMA BMA 0.440678 1
104 BMA BMA BMA BMA BMA 0.440678 1
105 MTT 0.440678 1
106 MAN MAN BMA BMA BMA BMA 0.440678 1
107 GLC GLC GLC GLC GLC 0.440678 1
108 BGC GLC GLC 0.440678 1
109 BMA MAN BMA 0.440678 1
110 BGC GLC GLC GLC 0.440678 1
111 GLA GAL GLC 0.440678 1
112 CT3 0.440678 1
113 BGC BGC BGC 0.440678 1
114 BGC BGC GLC 0.440678 1
115 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.440678 1
116 CTR 0.440678 1
117 CEY 0.440678 1
118 GLC BGC BGC 0.440678 1
119 GLA GAL BGC 0.440678 1
120 BMA BMA BMA BMA BMA BMA 0.440678 1
121 GLC GLC BGC 0.440678 1
122 CTT 0.440678 1
123 BGC BGC BGC BGC BGC BGC 0.440678 1
124 BGC BGC BGC GLC 0.440678 1
125 MAN BMA BMA 0.440678 1
126 B4G 0.440678 1
127 GAL GAL GAL 0.440678 1
128 BGC GLC GLC GLC GLC 0.440678 1
129 CE8 0.440678 1
130 BMA BMA BMA 0.440678 1
131 GLC BGC BGC BGC 0.440678 1
132 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.440678 1
133 CE6 0.440678 1
134 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.439024 0.6875
135 1GN ACY GAL ACY 1GN BGC GAL BGC 0.439024 0.6875
136 JZR 0.438596 0.714286
137 BHG 0.438596 0.714286
138 GLC HEX 0.438596 0.714286
139 TRE 0.4375 1
140 BMA Z4Y NAG 0.435897 0.717391
141 B7G 0.431034 0.738095
142 KGM 0.431034 0.738095
143 2M4 0.428571 1
144 MBG 0.428571 0.857143
145 MMA 0.428571 0.857143
146 GYP 0.428571 0.857143
147 AMG 0.428571 0.857143
148 GAL GAL SO4 0.424242 0.66
149 BOG 0.423729 0.738095
150 BNG 0.423729 0.738095
151 HSJ 0.423729 0.738095
152 M1P 0.423077 0.697674
153 XGP 0.423077 0.697674
154 G1P 0.423077 0.697674
155 GL1 0.423077 0.697674
156 BGC BGC XYS BGC 0.418919 0.942857
157 GAL FUC 0.416667 0.941176
158 SER MAN 0.416667 0.72093
159 XYT 0.415385 0.767442
160 BQZ 0.415094 0.909091
161 6SA 0.414894 0.733333
162 GAL BGC NAG GAL 0.413333 0.733333
163 GAL BGC BGC XYS 0.410959 0.942857
164 BGC BGC BGC GLC BGC BGC 0.409836 1
165 GLC BGC BGC BGC BGC BGC BGC 0.409836 1
166 GLA EGA 0.409836 0.942857
167 DGD 0.409639 0.733333
168 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.409091 0.733333
169 NAG NAG BMA MAN MAN 0.406977 0.6875
170 T6P 0.40678 0.767442
171 GLA GAL GAL 0.40625 1
172 IAB 0.404494 0.733333
173 MAN MAN BMA 0.403226 1
174 BMA BMA MAN 0.403226 1
175 GLC BGC BGC XYS BGC XYS XYS 0.402597 0.942857
176 BGC BGC BGC XYS BGC XYS XYS 0.402597 0.942857
177 BGC BGC XYS BGC XYS BGC XYS 0.402597 0.942857
178 BMA MAN MAN MAN 0.4 1
Ligand no: 2; Ligand: NAG NDG; Similar ligands found: 133
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG NDG 1 1
2 NAG NAG 1 1
3 NAG NAG NAG 0.890625 0.962264
4 NAG NAG NAG NAG 0.890625 0.962264
5 NAG NAG BMA 0.732394 0.980769
6 NAG NDG BMA 0.732394 0.980769
7 NAG BMA 0.71875 0.941176
8 NAG NAG BMA MAN NAG 0.655172 0.962264
9 NAG NAG BMA MAN 0.65 0.980769
10 NAG NAG BMA BMA 0.641026 0.944444
11 NGA GAL 0.623188 0.901961
12 NAG GDL 0.617647 0.903846
13 NDG NAG 0.617647 0.903846
14 CBS CBS 0.617647 0.903846
15 CBS 0.617647 0.903846
16 NAG NAG BMA MAN MAN NAG NAG 0.606383 0.962264
17 GAL NAG 0.602941 0.846154
18 NAG GAL 0.602941 0.846154
19 MBG A2G 0.585714 0.849057
20 A2G MBG 0.585714 0.849057
21 NAG NAG NAG NAG NDG 0.583333 0.886792
22 NAG NAG NAG NAG NAG NAG NAG NAG 0.583333 0.886792
23 NAG NAG NDG 0.583333 0.886792
24 NAG NAG NAG NDG 0.583333 0.886792
25 NDG NAG NAG NDG 0.583333 0.886792
26 CTO 0.583333 0.886792
27 NAG NAG NDG NAG 0.583333 0.886792
28 NAG NAG NAG NAG NAG 0.583333 0.886792
29 NDG NAG NAG 0.583333 0.886792
30 NAG NAG NAG NAG NAG NAG 0.583333 0.886792
31 NDG NAG NAG NAG 0.583333 0.886792
32 NAG NGA 0.571429 0.903846
33 NAG A2G 0.571429 0.903846
34 NGA GAL BGC 0.56 0.846154
35 3QL 0.56 0.839286
36 MAN MAN NAG 0.551282 0.884615
37 NAG MBG 0.549296 0.849057
38 GAL NGA A2G 0.546667 0.903846
39 NOJ NAG NAG NAG 0.54321 0.877193
40 Z4S NAG NAG 0.54321 0.824561
41 NOJ NAG NAG 0.54321 0.892857
42 NAG MAN BMA 0.532468 0.846154
43 AH0 NAG 0.518519 0.810345
44 2F8 0.515625 0.826923
45 MAG 0.515625 0.826923
46 NAG NAG BMA MAN MAN MAN MAN 0.514852 0.980769
47 NAG MAN 0.513514 0.849057
48 NAG GAL BGC 0.5125 0.846154
49 NAG GAL NAG 0.5125 0.903846
50 NG1 0.507463 0.677419
51 GN1 0.507463 0.677419
52 NGT NAG 0.506173 0.730159
53 NGA GAL FUC 0.5 0.865385
54 A2G GLA FUC 0.5 0.865385
55 FUC GAL A2G 0.5 0.865385
56 A2G GAL FUC 0.5 0.865385
57 FUC GLA A2G 0.5 0.865385
58 DLD 0.493976 0.786885
59 5AX 0.492063 0.862745
60 FHY 0.488636 0.824561
61 NAG AH0 0.488372 0.810345
62 NAG MAN MAN 0.487805 0.846154
63 NAG MAN MMA 0.4875 0.849057
64 NGA GLA GAL BGC 0.482353 0.846154
65 NAG MUB 0.481928 0.87037
66 NAG AMU 0.481928 0.87037
67 NAG NM9 0.47561 0.854545
68 GYU 0.472973 0.810345
69 GAL NAG GAL BGC 0.471264 0.884615
70 6Y2 0.471264 0.691176
71 NAG NAG NGT 0.471264 0.746032
72 GAL NAG GAL 0.46988 0.884615
73 NAG MAN MAN MAN NAG 0.465909 0.903846
74 NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.464646 0.923077
75 FUC NAG GAL 0.463415 0.942308
76 SN5 SN5 0.460526 0.75
77 FUC BGC GAL NAG 0.455556 0.865385
78 NAG AMU NAG AMV 0.455556 0.854545
79 BMA Z4Y NAG 0.454545 0.830189
80 3YW 0.452055 0.843137
81 GLC FUC GAL FUC A2G 0.450549 0.849057
82 BGC FUC GAL FUC A2G 0.450549 0.849057
83 A2G GAL BGC FUC 0.445652 0.865385
84 FUC GAL NAG A2G 0.445652 0.886792
85 A2G GAL NAG FUC 0.445652 0.886792
86 SIA GAL NAG 0.441176 0.927273
87 NAA NAA AMI 0.44086 0.681159
88 AO3 0.44086 0.681159
89 MMA MAN NAG MAN NAG NAG 0.43956 0.87037
90 GAL NAG MAN 0.439024 0.846154
91 LEC NGA 0.438202 0.691176
92 MA8 0.435897 0.818182
93 TCG 0.435294 0.758065
94 NAG BDP NAG BDP NAG BDP NAG 0.434783 0.87037
95 TNR 0.434211 0.867925
96 NAG NAG FUL BMA MAN MAN NAG GAL 0.432432 0.962264
97 GUM 0.431579 0.783333
98 FUC NAG 0.43038 0.960784
99 ALA NAG AH0 DAL 0.428571 0.79661
100 GYT 0.426829 0.833333
101 GAL NDG 0.426667 0.846154
102 NLC 0.426667 0.846154
103 NDG GAL 0.426667 0.846154
104 NAG GAL GAL NAG GAL 0.425287 0.903846
105 UMG 0.42268 0.783333
106 FUC GAL NAG A2G FUC 0.421053 0.886792
107 NAG GAL FUC FUC A2G 0.421053 0.886792
108 NAG MAN BMA MAN NAG GAL 0.42 0.903846
109 3PV 0.419355 0.836364
110 A2G 0.415385 0.784314
111 NGA 0.415385 0.784314
112 NAG 0.415385 0.784314
113 BM3 0.415385 0.784314
114 HSQ 0.415385 0.784314
115 NDG 0.415385 0.784314
116 NAG GDL PHJ 0.414141 0.723077
117 NAG A2G GAL 0.413793 0.903846
118 NAG BMA NAG MAN MAN NAG NAG 0.411765 0.886792
119 BGA 0.410526 0.79661
120 GAL NAG GAL NAG GAL NAG 0.409091 0.886792
121 NAG GAL GAL NAG 0.409091 0.903846
122 GAL A2G 0.407895 0.846154
123 8VZ 0.407895 0.886792
124 A2G GAL 0.407895 0.846154
125 GAL NGA 0.407895 0.846154
126 JXD 0.407767 0.7
127 GAL NOK 0.407407 0.875
128 NAG GAL 2NA 0.405941 0.758621
129 LAT NAG GAL 0.404494 0.846154
130 GLC GAL NAG GAL 0.404494 0.846154
131 LEC 0.402439 0.647059
132 6ZC 0.402439 0.647059
133 WZ5 0.402062 0.849057
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1HFU; Ligand: MAN MAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1hfu.bio1) has 3 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1HFU; Ligand: NAG NDG; Similar sites found with APoc: 116
This union binding pocket(no: 2) in the query (biounit: 1hfu.bio1) has 6 residues
No: Leader PDB Ligand Sequence Similarity
1 3RS8 ALA TRP LEU PHE GLU ALA 1.19522
2 4QAC KK3 1.38249
3 3H7R NAP 1.51057
4 2IO8 ADP 1.59046
5 4HAQ CTR 1.62413
6 1XSE NDP 1.69492
7 2NZ5 226 1.69492
8 2GU8 796 1.78042
9 1MWH GTG 1.78926
10 1JG9 GLC 1.78926
11 4BXK 1IU 1.78926
12 4A1O JLN 1.98807
13 5OGX FAD 2.08333
14 3SI2 PBD 2.14067
15 3COB ADP 2.16802
16 5OD2 5ID 2.18341
17 2GVC FAD 2.23714
18 2GQT FAD 2.23881
19 3WCZ NAP 2.27273
20 2BGS NDP 2.32558
21 2E1T MLC 2.42291
22 6FS8 E4Z 2.43902
23 5CUO COA 2.47525
24 5BVE 4VG 2.49307
25 4WOV 3SM 2.52366
26 6EQS BV8 2.54545
27 1WPY BTN 2.55319
28 2DXU BT5 2.55319
29 6AIX A3P 2.6455
30 4ZL4 4PK 2.7027
31 2NV4 SAM 2.72109
32 5F3I 5UJ 2.77778
33 2X1L ADN 2.7833
34 5YW5 ADE 2.7933
35 6FCH PRP 2.80899
36 4JIZ TYR HIS SEP VAL VAL ARG TYR ALA 2.90698
37 3F8D FAD 3.09598
38 1RM6 FAD 3.10559
39 4FRZ ADP 3.10881
40 5LXT GTP 3.125
41 4CA5 3EF 3.18091
42 4EZW ASN ARG LEU LEU LEU THR GLY 3.19635
43 1KQB BEZ 3.22581
44 1KQB FMN 3.22581
45 5ULJ 0WD 3.2419
46 4IZY 1J2 3.25203
47 2RKV COA 3.32594
48 2RKV ZBA 3.32594
49 4N70 2HX 3.35366
50 2QTZ NAP 3.37972
51 1TDU CB3 3.39623
52 5TUF FAD 3.42298
53 5J6C FMN 3.48259
54 3CY2 MB9 3.50318
55 1YKI NFZ 3.68664
56 1YKI FMN 3.68664
57 1ICV FMN 3.68664
58 4WNP 3RJ 3.83275
59 2YPO PHE 3.8961
60 4M8E 29V 3.8961
61 4POJ 2VP 3.8961
62 4UYW H1S 3.91645
63 4CZG QH3 4.02299
64 2IV2 MGD 4.17495
65 5DY5 5GR 4.27632
66 5APG EEM 4.32432
67 4P86 5GP 4.37158
68 2QF7 COA 4.37376
69 3OZG SSI 4.4
70 3H7U NAP 4.47761
71 2B8T THM 4.4843
72 4JMO JAF 4.5
73 3FV3 IVA VAL VAL STA ALA STA 4.71976
74 3AB4 LYS 5.05618
75 4X3H ARG ILE PRO SER TYR ARG TYR ARG TYR 5.06329
76 1L6O SER LEU LYS LEU MET THR THR VAL 5.26316
77 1W0H AMP 5.39216
78 4H6U ACO 5.5
79 3QX9 ATP 5.7971
80 1NB9 ADP 6.12245
81 1NB9 RBF 6.12245
82 5VJN IR8 6.41711
83 5VJN ADE 6.41711
84 2H6T IVA VAL VAL STA ALA STA 6.47059
85 4RLE 2BA 6.83761
86 5KBZ 3B2 6.89655
87 2R40 20E 7.14286
88 3O0G 3O0 7.38255
89 5FA8 SAM 7.45342
90 4M4Q 21A 7.46888
91 3AIA SAM 7.58294
92 5KIQ SIA GAL NAG FUC 7.61421
93 5JH2 A2P 7.74194
94 1RE0 AFB 7.92683
95 3AQV TAK 8.33333
96 4KIL 1R5 8.4507
97 1PVC ILE SER GLU VAL 8.63787
98 1VP5 NAP 8.72483
99 4X7Q 3YR 8.74751
100 4MFL MFK 8.98551
101 3QDV NDG 9.09091
102 3QDX CBS 9.09091
103 5W7U GY8 9.13706
104 5D9J 0N8 9.62567
105 1BOB ACO 9.6875
106 3SM2 478 9.84848
107 5J62 FMN 10.3896
108 3I7V B4P 10.4478
109 4Q0P 0MK 10.7692
110 1PEA ACM 10.9091
111 1LBF 137 11.7409
112 4OZJ ADP 11.8881
113 2XI7 XI7 12.5
114 2YVO AMP 12.6374
115 5EQ0 5R0 PHE ALA LEU ELY 5R5 12.7273
116 2DYR PEK 24.6575
APoc FAQ
Feedback