Receptor
PDB id Resolution Class Description Source Keywords
1HMU 2 Å EC: 4.2.2.5 ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUC ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS PEDOBACTER HEPARINUS PROTEIN-OLIGOSACCHARIDE COMPLEX ACTIVE SITE CATALYSIS LYA
Ref.: ACTIVE SITE OF CHONDROITIN AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS. BIOCHEMISTRY V. 40 2359 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ASG GCD D:1;
Valid;
none;
submit data
457.365 n/a S(=O)...
CA A:1801;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
MAN GCU RAM C:1;
Part of Protein;
none;
submit data
n/a n/a
MAN GCU RAM XYP MXY B:1;
Part of Protein;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1HMU 2 Å EC: 4.2.2.5 ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUC ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS PEDOBACTER HEPARINUS PROTEIN-OLIGOSACCHARIDE COMPLEX ACTIVE SITE CATALYSIS LYA
Ref.: ACTIVE SITE OF CHONDROITIN AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS. BIOCHEMISTRY V. 40 2359 2001
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1HMU - ASG GCD n/a n/a
2 1HM3 - NAG BDP n/a n/a
3 1HMW - NG6 BDP ASG GCD n/a n/a
4 1HM2 - ASG IDR ASG IDR n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1HMU - ASG GCD n/a n/a
2 1HM3 - NAG BDP n/a n/a
3 1HMW - NG6 BDP ASG GCD n/a n/a
4 1HM2 - ASG IDR ASG IDR n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1HMU - ASG GCD n/a n/a
2 1HM3 - NAG BDP n/a n/a
3 1HMW - NG6 BDP ASG GCD n/a n/a
4 1HM2 - ASG IDR ASG IDR n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ASG GCD; Similar ligands found: 14
No: Ligand ECFP6 Tc MDL keys Tc
1 ASG GCD 1 1
2 8EX GCD 0.7875 0.968254
3 ASG BDP ASG GCD 0.744681 0.953846
4 NAG GAD 0.692308 0.734375
5 NG6 GCD 0.635294 0.953125
6 ASG GC4 0.586207 0.9375
7 ASG IDR ASG IDR 0.515152 0.909091
8 GNS UAP 0.48913 0.880597
9 NDG GCD 0.483516 0.707692
10 MAG SGA FUC 0.474227 0.893939
11 NAG G6S 0.434783 0.907692
12 NAG FUC GAL 0.423913 0.636364
13 83Y BDP 83Y GCD 0.407407 0.71875
14 ASG 0.402439 0.875
Similar Ligands (3D)
Ligand no: 1; Ligand: ASG GCD; Similar ligands found: 3
No: Ligand Similarity coefficient
1 NGK GCD 0.9456
2 NGA GCD 0.9004
3 NAG GCD 0.8654
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1HMU; Ligand: ASG GCD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1hmu.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
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