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Receptor
PDB id Resolution Class Description Source Keywords
1I6K 1.72 Å EC: 6.1.1.2 1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRN SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP GEOBACILLUS STEAROTHERMOPHILUS CLASS I TRNA SYNTHETASE AARS INDUCED FIT TRPRS LIGASE
Ref.: HIGH-RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANY SYNTHETASE (TRPRS) COMPLEXED WITH TRYPTOPHANYL-5'AM ACTA CRYSTALLOGR.,SECT.D V. 57 1595 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:370;
A:371;
A:372;
A:373;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
NH4 A:400;
Invalid;
none;
submit data
18.038 H4 N [NH4+...
SO4 A:360;
A:361;
A:362;
A:363;
A:364;
A:365;
A:366;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
TYM A:350;
Valid;
none;
submit data
533.431 C21 H24 N7 O8 P c1ccc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DK4 1.9 Å EC: 6.1.1.2 CRYSTAL STRUCTURE ANALYSIS OF TRYPTOPHANYL-TRNA SYNTHETASE F BACILLUS STEAROTHERMOPHILUS IN COMPLEX WITH INDOLMYCIN AND GEOBACILLUS STEAROTHERMOPHILUS AARS INHIBITOR LIGASE-LIGASE INHIBITOR COMPLEX
Ref.: SELECTIVE INHIBITION OF BACTERIAL TRYPTOPHANYL-TRNA SYNTHETASES BY INDOLMYCIN IS MECHANISM-BASED. J.BIOL.CHEM. V. 291 255 2016
Members (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1I6K - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 1MAU - CIT C6 H8 O7 C(C(=O)O)C....
3 1M83 Kd = 0.4 mM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 1I6M - TYM C21 H24 N7 O8 P c1ccc2c(c1....
5 5DK4 Ki = 2 nM 5BX C14 H15 N3 O2 C[C@H](c1c....
6 1I6L - TYM C21 H24 N7 O8 P c1ccc2c(c1....
7 2OV4 Ki = 2 mM AQP C10 H17 N5 O16 P4 c1nc(c2c(n....
70% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1I6K - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 1MAU - CIT C6 H8 O7 C(C(=O)O)C....
3 1M83 Kd = 0.4 mM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 1I6M - TYM C21 H24 N7 O8 P c1ccc2c(c1....
5 5DK4 Ki = 2 nM 5BX C14 H15 N3 O2 C[C@H](c1c....
6 1I6L - TYM C21 H24 N7 O8 P c1ccc2c(c1....
7 2OV4 Ki = 2 mM AQP C10 H17 N5 O16 P4 c1nc(c2c(n....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1I6K - TYM C21 H24 N7 O8 P c1ccc2c(c1....
2 1MAU - CIT C6 H8 O7 C(C(=O)O)C....
3 1M83 Kd = 0.4 mM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 1I6M - TYM C21 H24 N7 O8 P c1ccc2c(c1....
5 5DK4 Ki = 2 nM 5BX C14 H15 N3 O2 C[C@H](c1c....
6 1I6L - TYM C21 H24 N7 O8 P c1ccc2c(c1....
7 2OV4 Ki = 2 mM AQP C10 H17 N5 O16 P4 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: TYM; Similar ligands found: 244
No: Ligand ECFP6 Tc MDL keys Tc
1 TYM 1 1
2 FA5 0.72381 1
3 SRP 0.7 0.972973
4 YAP 0.691589 0.986486
5 AMO 0.673077 0.972973
6 LAD 0.669811 0.923077
7 WSA 0.666667 0.845238
8 5AL 0.663366 0.945946
9 ME8 0.648148 0.9
10 NB8 0.648148 0.935065
11 8QN 0.632075 0.945946
12 PAJ 0.626168 0.875
13 CA0 0.62 0.933333
14 4AD 0.611111 0.96
15 DLL 0.605505 0.972603
16 PTJ 0.603604 0.886076
17 OOB 0.601852 0.972603
18 YLP 0.59322 0.878049
19 A2D 0.585859 0.932432
20 3UK 0.585586 0.959459
21 WAQ 0.580357 0.922078
22 B5V 0.580357 0.946667
23 YLB 0.578512 0.878049
24 YLC 0.578512 0.9
25 AN2 0.578431 0.894737
26 AHX 0.576577 0.910256
27 BA3 0.574257 0.932432
28 AYB 0.572581 0.86747
29 AP5 0.568627 0.932432
30 B4P 0.568627 0.932432
31 ADP 0.568627 0.906667
32 YLA 0.564516 0.878049
33 AT4 0.563107 0.871795
34 00A 0.5625 0.922078
35 AR6 0.561905 0.932432
36 PRX 0.561905 0.858974
37 APR 0.561905 0.932432
38 1ZZ 0.561404 0.853659
39 FYA 0.561404 0.945946
40 ANP 0.560748 0.883117
41 B5M 0.560345 0.934211
42 ADX 0.557692 0.819277
43 M33 0.557692 0.894737
44 AD9 0.556604 0.883117
45 AMP 0.555556 0.905405
46 XAH 0.555556 0.876543
47 A 0.555556 0.905405
48 PR8 0.552632 0.911392
49 HEJ 0.552381 0.906667
50 ATP 0.552381 0.906667
51 ACP 0.552381 0.907895
52 50T 0.552381 0.87013
53 9SN 0.551724 0.910256
54 TXA 0.547826 0.921053
55 5FA 0.54717 0.906667
56 AQP 0.54717 0.906667
57 B5Y 0.547009 0.934211
58 SAP 0.542056 0.860759
59 AGS 0.542056 0.860759
60 YLY 0.541985 0.86747
61 A1R 0.539823 0.897436
62 ABM 0.539216 0.881579
63 3OD 0.534483 0.933333
64 ACQ 0.53211 0.907895
65 9ZA 0.530973 0.897436
66 25A 0.530973 0.932432
67 9ZD 0.530973 0.897436
68 N0B 0.529851 0.901235
69 AP2 0.528846 0.896104
70 A12 0.528846 0.896104
71 AU1 0.528302 0.883117
72 4UV 0.525 0.934211
73 V1N 0.525 0.932432
74 DQV 0.52459 0.945946
75 ATF 0.522523 0.871795
76 A22 0.522124 0.92
77 DAL AMP 0.522124 0.92
78 LAQ 0.520325 0.853659
79 SRA 0.519608 0.858974
80 GAP 0.518182 0.907895
81 6YZ 0.517857 0.907895
82 OAD 0.517241 0.933333
83 ADV 0.513761 0.921053
84 RBY 0.513761 0.921053
85 A3R 0.513043 0.897436
86 TXE 0.507937 0.897436
87 M24 0.507463 0.8875
88 SON 0.504673 0.946667
89 APC 0.504587 0.896104
90 TAT 0.504505 0.871795
91 T99 0.504505 0.871795
92 5SV 0.504348 0.817073
93 9X8 0.504274 0.884615
94 25L 0.504202 0.92
95 4UU 0.504065 0.934211
96 BT5 0.5 0.86747
97 ADQ 0.5 0.933333
98 NAI 0.5 0.897436
99 DND 0.5 0.946667
100 NXX 0.5 0.946667
101 4UW 0.5 0.898734
102 TYR AMP 0.5 0.96
103 80F 0.496241 0.901235
104 IOT 0.496124 0.86747
105 7MD 0.491935 0.9
106 NAX 0.488189 0.911392
107 TXD 0.488189 0.897436
108 AMP DBH 0.487805 0.883117
109 ADP PO3 0.486486 0.905405
110 G3A 0.483871 0.886076
111 BIS 0.483333 0.85
112 MAP 0.482759 0.860759
113 ADP ALF 0.482456 0.8375
114 ALF ADP 0.482456 0.8375
115 T5A 0.480916 0.878049
116 48N 0.480315 0.910256
117 G5P 0.48 0.886076
118 VO4 ADP 0.478261 0.894737
119 ADP VO4 0.478261 0.894737
120 SSA 0.478261 0.813953
121 6V0 0.476562 0.886076
122 LSS 0.474576 0.795455
123 F2R 0.473684 0.878049
124 NAE 0.471014 0.909091
125 NAD 0.470149 0.945946
126 TSB 0.470085 0.790698
127 5CA 0.470085 0.813953
128 A5A 0.469565 0.8
129 AP0 0.469231 0.8625
130 ARG AMP 0.468254 0.865854
131 AFH 0.468254 0.898734
132 GA7 0.468254 0.896104
133 YSA 0.467742 0.835294
134 NAQ 0.467626 0.886076
135 MYR AMP 0.467213 0.831325
136 LMS 0.466667 0.797619
137 CNA 0.466165 0.946667
138 BV8 0.465517 0.811111
139 GTA 0.464567 0.853659
140 A3D 0.463235 0.933333
141 KAA 0.46281 0.786517
142 A A 0.46281 0.906667
143 DSZ 0.462185 0.835294
144 54H 0.461538 0.781609
145 VMS 0.461538 0.781609
146 AF3 ADP 3PG 0.461538 0.875
147 OMR 0.461538 0.843373
148 BVT 0.460227 0.802198
149 PAP 0.460177 0.893333
150 COD 0.459259 0.825581
151 139 0.458647 0.8875
152 ADJ 0.458647 0.865854
153 UPA 0.458015 0.897436
154 AOC 0.457944 0.789474
155 53H 0.457627 0.772727
156 ADP BMA 0.454545 0.907895
157 UP5 0.453846 0.909091
158 2A5 0.451327 0.858974
159 GSU 0.45082 0.835294
160 BJW 0.45 0.820225
161 52H 0.449153 0.772727
162 RAB 0.44898 0.786667
163 ADN 0.44898 0.786667
164 XYA 0.44898 0.786667
165 AMP NAD 0.448529 0.945946
166 BTX 0.448529 0.855422
167 PPS 0.448276 0.797619
168 8PZ 0.448 0.835294
169 ATP A A A 0.448 0.918919
170 EAD 0.447552 0.8875
171 9K8 0.447154 0.747253
172 JB6 0.447154 0.897436
173 7MC 0.44697 0.878049
174 4TC 0.44697 0.910256
175 A3P 0.445455 0.905405
176 DZD 0.445255 0.898734
177 A4P 0.443609 0.835294
178 G5A 0.443478 0.813953
179 5X8 0.442478 0.826667
180 TAD 0.44186 0.875
181 5AS 0.441441 0.752809
182 NSS 0.438017 0.813953
183 0WD 0.437956 0.886076
184 A2R 0.436975 0.92
185 5CD 0.435644 0.773333
186 COT 0.435583 0.818182
187 NDE 0.435374 0.921053
188 P1H 0.435374 0.865854
189 LPA AMP 0.435115 0.831325
190 SA8 0.434783 0.765432
191 ATR 0.434783 0.88
192 NVA LMS 0.434426 0.786517
193 AR6 AR6 0.434109 0.932432
194 ZID 0.433566 0.933333
195 8X1 0.433333 0.786517
196 SAI 0.431034 0.794872
197 SAH 0.431034 0.805195
198 LEU LMS 0.430894 0.786517
199 CA3 0.430303 0.818182
200 SFG 0.429825 0.813333
201 SMM 0.428571 0.741176
202 NAJ PZO 0.428571 0.8625
203 AHZ 0.427481 0.831325
204 P5A 0.427419 0.777778
205 SAM 0.42735 0.746988
206 5N5 0.425743 0.763158
207 7D5 0.424528 0.820513
208 EEM 0.423729 0.746988
209 7D3 0.423423 0.822785
210 A4D 0.421569 0.763158
211 7D4 0.421053 0.822785
212 A2P 0.419643 0.891892
213 DTA 0.419048 0.779221
214 G A A A 0.417266 0.8625
215 4TA 0.417266 0.865854
216 3AM 0.416667 0.866667
217 V3L 0.415254 0.932432
218 6AD 0.411765 0.829268
219 ARU 0.41129 0.785714
220 NDC 0.410596 0.886076
221 FB0 0.410596 0.797753
222 A5D 0.410256 0.779221
223 NJP 0.410072 0.909091
224 EP4 0.409524 0.725
225 6RE 0.409091 0.753086
226 4YB 0.409091 0.837209
227 ITT 0.408696 0.855263
228 3DH 0.407407 0.74359
229 A G 0.407143 0.873418
230 NAJ PYZ 0.406897 0.821429
231 NDP 0.405797 0.886076
232 M2T 0.40566 0.707317
233 DCA 0.405594 0.816092
234 FDA 0.405229 0.825581
235 FNK 0.405063 0.818182
236 S7M 0.404959 0.746988
237 7C5 0.40458 0.833333
238 U A G G 0.404255 0.873418
239 67D 0.402878 0.795455
240 MTA 0.401869 0.74359
241 IMO 0.401786 0.866667
242 J7C 0.401786 0.7625
243 62X 0.4 0.72093
244 A3S 0.4 0.826667
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DK4; Ligand: 5BX; Similar sites found with APoc: 180
This union binding pocket(no: 1) in the query (biounit: 5dk4.bio1) has 43 residues
No: Leader PDB Ligand Sequence Similarity
1 5N53 8NB None
2 5Y0T TAT 0.911854
3 3C8Z 5CA 1.21581
4 5O0B 9FE 1.23457
5 1L7N ALF 1.4218
6 5V49 MET 1.51976
7 4XDA RIB 1.61812
8 5Y0Q APC 1.82371
9 5Y0N ATP 1.82371
10 5W8X UDP 1.82371
11 3CB2 GDP 1.82371
12 3KO0 TFP 1.9802
13 2PID YSA 2.12766
14 1P7T PYR 2.12766
15 1D8C GLV 2.12766
16 3QPB R1P 2.12766
17 5JU6 BGC 2.12766
18 2WN6 NDP 2.12766
19 6GN6 GLC 2.12766
20 2VRQ XYP XYP AHR 2.12766
21 1KQN NAD 2.15054
22 4ZEV M6P 2.36486
23 1PFY MSP 2.43161
24 1MJT ITU 2.43161
25 5C9P FUC 2.43161
26 1DNP MHF 2.43161
27 5ZZO FLC 2.48756
28 3NOJ PYR 2.52101
29 5OFW 9TW 2.69058
30 6CI9 F3V 2.7027
31 1NXJ TLA 2.73224
32 2FN1 PYR 2.73556
33 6F5W KG1 2.73556
34 3BOF HCS 2.73556
35 1Q8A HCS 2.73556
36 3QDT A2G GAL 2.7972
37 3QDX A2G GAL 2.7972
38 3COW 52H 2.99003
39 2G3F IZC 3.03951
40 5XET ME8 3.03951
41 4MAF ADX 3.03951
42 5OD2 GLC 3.03951
43 4A4Z ANP 3.03951
44 6C90 ADP 3.03951
45 2Q8G AZX 3.03951
46 1JIL 485 3.03951
47 4DZ1 DAL 3.0888
48 3UYW TAU 3.27103
49 3BFV ADP 3.32103
50 1UA4 GLC 3.34347
51 1UA4 BGC 3.34347
52 1UOU CMU 3.34347
53 1UZ4 IFL 3.34347
54 4IID NOJ 3.34347
55 1P4A PCP 3.50877
56 4MN3 ACE PHE ALA TYR M3L SER NH2 3.57143
57 3R75 PYR 3.64742
58 6BSW UDP 3.64742
59 1RPN GDP 3.64742
60 5JBE MAL 3.64742
61 3L8G GMB 3.74332
62 5X3D 7XL 3.75
63 1K4M NAD 3.75587
64 3FWY ADP 3.82166
65 1J09 ATP 3.95137
66 1J09 GLU 3.95137
67 4C2C ALA ALA ALA 3.95137
68 2OG2 MLI 3.95137
69 6BYF CIT 4.11765
70 1YUM NCN 4.13223
71 2X3F APC 4.21053
72 2QTR NXX 4.2328
73 3HL4 CDC 4.23729
74 1Q19 SSC 4.25532
75 3CV2 OXL 4.25532
76 1HE1 AF3 4.54545
77 1Y42 TYR 4.55927
78 3KFL ME8 4.55927
79 3OCZ SRA 4.55927
80 6EOM ALA LYS 4.55927
81 5LJW ANP 4.55927
82 5BSH PRO 4.69314
83 2BQP GLC 4.70085
84 5ZDN CDP 4.73934
85 2Z8L NAG FUC SIA GAL 4.80769
86 5Z5I XYP 4.86322
87 1YFS ALA 4.86322
88 5V59 8X1 4.86322
89 2ZJ5 ADP 4.86322
90 1OYY AGS 4.86322
91 2RIF AMP 4.96454
92 2HW1 FRU 5.03356
93 2GN3 MAN 5.15873
94 2GN3 MMA 5.15873
95 1L5Y BEF 5.16129
96 2X1L ADN 5.16717
97 2X1L MET 5.16717
98 1GRN AF3 5.2356
99 3WR7 COA 5.29412
100 5XLX SAH 5.31915
101 4TS1 TYR 5.32915
102 1A8R GTP 5.42986
103 1V47 ADX 5.47112
104 5M6N 7H9 5.47112
105 1GXU 2HP 5.49451
106 3PA8 621 5.51181
107 3FXU TSU 5.57377
108 3A1C ACP 5.57491
109 6CHP F0Y 5.59006
110 3E7S AT2 5.77508
111 3QX9 ATP 5.7971
112 2QJT AMP 6.07903
113 1PIE GLA 6.07903
114 3G2Y GF4 6.08365
115 3R77 QLI 6.2201
116 3F8K COA 6.25
117 3UC5 ATP 6.36943
118 1W0H AMP 6.37255
119 2XZ9 PYR 6.48148
120 3VEH 0GA 6.68693
121 4A91 GLU 6.71141
122 4BKS X6C 6.73077
123 4W9F 3JU 6.73077
124 4B9K TG0 6.73077
125 5NC1 NAG 6.75105
126 3GUZ PAF 6.81818
127 4K30 NLG 6.875
128 6BK3 UDP 7.06638
129 1I7Q PYR 7.25389
130 5VYH FOL 7.29483
131 2EB5 OXL 7.49064
132 3ZIU LSS 7.59878
133 1IH7 GMP 7.59878
134 1JZS MRC 7.59878
135 3ND6 ATP 7.60234
136 3CM2 X23 7.69231
137 5E5U MLI 8.0402
138 4KJU 1RH 8.13953
139 4IF4 BEF 8.17308
140 3G5K BB2 8.19672
141 4A69 I0P 8.20669
142 4LXH C1E 8.30325
143 2VAR AMP 8.30671
144 2VAR KDF 8.30671
145 2VAR KDG 8.30671
146 1X8X TYR 8.38509
147 4R57 ACO 8.52273
148 4NTO 1PW 8.69565
149 5W6Y TRP 8.86076
150 1F9A ATP 8.92857
151 1KC7 PPR 9.11854
152 2RBK VN4 9.1954
153 2GKS ADP 9.42249
154 3ZOA ACR 9.72644
155 2WCV FUC 10
156 2BVE PH5 10.084
157 2VSL MAA LYS PRO PHE 10.4167
158 1VBH PEP 10.6383
159 2V0C LEU LMS 11.2462
160 2Z3U CRR 11.5502
161 2H29 DND 11.6402
162 1O6B ADP 11.8343
163 1N1D C2G 12.4031
164 3AFH GSU 12.462
165 1OFS SUC 12.5
166 3ZLB ANP 14.2857
167 1Q11 TYE 14.5161
168 5LLT DND 15.493
169 4DS0 A2G GAL NAG FUC 15.9509
170 1H3F TYE 16.1094
171 3UW4 MAA CHG PRO 0DQ 18.4783
172 3G6N MET ALA SER 18.8482
173 1X0P FAD 20.979
174 3FGZ BEF 21.0938
175 2CYB TYR 28.7926
176 5MTE BB2 30.6569
177 2CYC TYR 32.5228
178 5N5U 7N8 38.535
179 5N5U AMP 38.535
180 2J5B TYE 38.9058
Pocket No.: 2; Query (leader) PDB : 5DK4; Ligand: 5BX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5dk4.bio1) has 43 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5DK4; Ligand: ATP; Similar sites found with APoc: 173
This union binding pocket(no: 3) in the query (biounit: 5dk4.bio1) has 42 residues
No: Leader PDB Ligand Sequence Similarity
1 5N53 8NB None
2 5Y0T TAT 0.911854
3 3C8Z 5CA 1.21581
4 5O0B 9FE 1.23457
5 1L7N ALF 1.4218
6 5V49 MET 1.51976
7 5Y0Q APC 1.82371
8 5Y0N ATP 1.82371
9 5W8X UDP 1.82371
10 3CB2 GDP 1.82371
11 2PID YSA 2.12766
12 1P7T PYR 2.12766
13 1D8C GLV 2.12766
14 3QPB R1P 2.12766
15 2WN6 NDP 2.12766
16 1KQN NAD 2.15054
17 2AF6 BRU 2.32558
18 4ZEV M6P 2.36486
19 3O94 NCA 2.36967
20 1PFY MSP 2.43161
21 1MJT ITU 2.43161
22 5C9P FUC 2.43161
23 1DNP MHF 2.43161
24 3HQP OXL 2.43161
25 5ZZO FLC 2.48756
26 3NOJ PYR 2.52101
27 5OFW 9TW 2.69058
28 6CI9 F3V 2.7027
29 1NXJ TLA 2.73224
30 2FN1 PYR 2.73556
31 6F5W KG1 2.73556
32 3BOF HCS 2.73556
33 1Q8A HCS 2.73556
34 3QDT A2G GAL 2.7972
35 3QDX A2G GAL 2.7972
36 2CFC KPC 2.8
37 3COW 52H 2.99003
38 2G3F IZC 3.03951
39 5XET ME8 3.03951
40 4MAF ADX 3.03951
41 5OD2 GLC 3.03951
42 4A4Z ANP 3.03951
43 6C90 ADP 3.03951
44 1JIL 485 3.03951
45 4DZ1 DAL 3.0888
46 3UYW TAU 3.27103
47 3BFV ADP 3.32103
48 1UA4 BGC 3.34347
49 1UA4 GLC 3.34347
50 1UOU CMU 3.34347
51 4IID NOJ 3.34347
52 1P4A PCP 3.50877
53 6BSW UDP 3.64742
54 1RPN GDP 3.64742
55 5T96 79J 3.64742
56 3L8G GMB 3.74332
57 5X3D 7XL 3.75
58 1K4M NAD 3.75587
59 3FWY ADP 3.82166
60 1J09 ATP 3.95137
61 1J09 GLU 3.95137
62 4C2C ALA ALA ALA 3.95137
63 2OG2 MLI 3.95137
64 1G7C 5GP 3.95137
65 6BYF CIT 4.11765
66 1YUM NCN 4.13223
67 2X3F APC 4.21053
68 2QTR NXX 4.2328
69 3HL4 CDC 4.23729
70 1Q19 SSC 4.25532
71 3CV2 OXL 4.25532
72 3B9Q MLI 4.30464
73 5X80 SAL 4.375
74 2F5X ASP 4.48718
75 1HE1 AF3 4.54545
76 1Y42 TYR 4.55927
77 3KFL ME8 4.55927
78 3ITJ CIT 4.55927
79 3OCZ SRA 4.55927
80 6EOM ALA LYS 4.55927
81 5LJW ANP 4.55927
82 5BSH PRO 4.69314
83 2BQP GLC 4.70085
84 1TIP F6P 4.71204
85 5ZDN CDP 4.73934
86 2VPE ALA ARG THR MLY GLN THR ALA 4.7619
87 2Z8L NAG FUC SIA GAL 4.80769
88 5Z5I XYP 4.86322
89 1YFS ALA 4.86322
90 5V59 8X1 4.86322
91 1OYY AGS 4.86322
92 2ZJ5 ADP 4.86322
93 2RIF AMP 4.96454
94 2HW1 FRU 5.03356
95 2GN3 MAN 5.15873
96 2GN3 MMA 5.15873
97 1L5Y BEF 5.16129
98 2X1L ADN 5.16717
99 2X1L MET 5.16717
100 1GRN AF3 5.2356
101 1UXX XYP XYP XYP XYP XYP 5.26316
102 3WR7 COA 5.29412
103 5XLX SAH 5.31915
104 4TS1 TYR 5.32915
105 1A8R GTP 5.42986
106 1V47 ADX 5.47112
107 1GXU 2HP 5.49451
108 3PA8 621 5.51181
109 6CHP F0Y 5.59006
110 3E7S AT2 5.77508
111 3QX9 ATP 5.7971
112 2QJT AMP 6.07903
113 1PIE GLA 6.07903
114 3G2Y GF4 6.08365
115 3F8K COA 6.25
116 3UC5 ATP 6.36943
117 1W0H AMP 6.37255
118 2XZ9 PYR 6.48148
119 3VEH 0GA 6.68693
120 4A91 GLU 6.71141
121 4BKS X6C 6.73077
122 4W9F 3JU 6.73077
123 4B9K TG0 6.73077
124 3GUZ PAF 6.81818
125 4K30 NLG 6.875
126 2P0D I3P 6.97674
127 6BK3 UDP 7.06638
128 1I7Q PYR 7.25389
129 5VYH FOL 7.29483
130 2EB5 OXL 7.49064
131 3ZIU LSS 7.59878
132 1IH7 GMP 7.59878
133 1JZS MRC 7.59878
134 3ND6 ATP 7.60234
135 5E5U MLI 8.0402
136 4IF4 BEF 8.17308
137 3G5K BB2 8.19672
138 2VAR AMP 8.30671
139 2VAR KDG 8.30671
140 2VAR KDF 8.30671
141 1X8X TYR 8.38509
142 4R57 ACO 8.52273
143 4NTO 1PW 8.69565
144 5W6Y TRP 8.86076
145 1F9A ATP 8.92857
146 1KC7 PPR 9.11854
147 2RBK VN4 9.1954
148 2GKS ADP 9.42249
149 2WCV FUC 10
150 2BVE PH5 10.084
151 1VBH PEP 10.6383
152 2V0C LEU LMS 11.2462
153 2Z3U CRR 11.5502
154 2H29 DND 11.6402
155 1O6B ADP 11.8343
156 1N1D C2G 12.4031
157 3AFH GSU 12.462
158 1OFS SUC 12.5
159 3ZLB ANP 14.2857
160 1Q11 TYE 14.5161
161 5LLT DND 15.493
162 4DS0 A2G GAL NAG FUC 15.9509
163 1H3F TYE 16.1094
164 5I34 GDP 16.1094
165 3PNA CMP 16.8831
166 3G6N MET ALA SER 18.8482
167 3FGZ BEF 21.0938
168 2CYB TYR 28.7926
169 5MTE BB2 30.6569
170 2CYC TYR 32.5228
171 5N5U AMP 38.535
172 5N5U 7N8 38.535
173 2J5B TYE 38.9058
Pocket No.: 4; Query (leader) PDB : 5DK4; Ligand: ATP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5dk4.bio1) has 42 residues
No: Leader PDB Ligand Sequence Similarity
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