-->
Receptor
PDB id Resolution Class Description Source Keywords
1KJ1 2.2 Å NON-ENZYME: BINDING MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE ALLIUM SATIVUM BULB LECTIN MANNOSE PLANT PROTEIN
Ref.: RE-REFINEMENT USING REPROCESSED DATA TO IMPROVE THE QUALITY OF THE STRUCTURE: A CASE STUDY INVOLVING GARLIC LECTIN. ACTA CRYSTALLOGR.,SECT.D V. 58 414 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MAN A:300;
A:301;
A:302;
A:303;
D:304;
D:305;
D:306;
P:307;
P:308;
P:309;
P:310;
Q:311;
Q:312;
Q:313;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
180.156 C6 H12 O6 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1KJ1 2.2 Å NON-ENZYME: BINDING MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE ALLIUM SATIVUM BULB LECTIN MANNOSE PLANT PROTEIN
Ref.: RE-REFINEMENT USING REPROCESSED DATA TO IMPROVE THE QUALITY OF THE STRUCTURE: A CASE STUDY INVOLVING GARLIC LECTIN. ACTA CRYSTALLOGR.,SECT.D V. 58 414 2002
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 1KJ1 - MAN C6 H12 O6 C([C@@H]1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 1KJ1 - MAN C6 H12 O6 C([C@@H]1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 1KJ1 - MAN C6 H12 O6 C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MAN; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 WOO 1 1
2 GLC 1 1
3 BGC 1 1
4 ALL 1 1
5 BMA 1 1
6 GXL 1 1
7 GIV 1 1
8 GAL 1 1
9 MAN 1 1
10 GLA 1 1
11 Z6J 0.653846 0.866667
12 32O 0.653846 0.866667
13 RIB 0.653846 0.866667
14 FUB 0.653846 0.866667
15 AHR 0.653846 0.866667
16 MLB 0.511628 0.848485
17 GLC GLC 0.511628 0.848485
18 BGC GLC 0.511628 0.848485
19 BGC GLA 0.511628 0.848485
20 GLA BMA 0.511628 0.848485
21 MAN BMA 0.511628 0.848485
22 BMA GLA 0.511628 0.848485
23 GLA BGC 0.511628 0.848485
24 MAN MAN 0.511628 0.848485
25 GLA GLC 0.511628 0.848485
26 BMA MAN 0.511628 0.848485
27 GAL GLC 0.511628 0.848485
28 GAL GAL 0.511628 0.848485
29 LAK 0.511628 0.848485
30 GLC BGC 0.511628 0.848485
31 YDR 0.5 0.8
32 GLC GLC GLC GLC BGC 0.488889 0.848485
33 GLC GLC GLC 0.488889 0.848485
34 MAN MAN MAN 0.488889 0.848485
35 BMA MAN MAN 0.488889 0.848485
36 GLC GLC GLC GLC GLC BGC 0.488889 0.848485
37 EMZ 0.472222 0.794118
38 BG6 0.461538 0.675
39 BGP 0.461538 0.675
40 G6P 0.461538 0.675
41 M6P 0.461538 0.675
42 M6D 0.461538 0.675
43 A6P 0.461538 0.675
44 GAF 0.457143 0.875
45 SHG 0.457143 0.875
46 2FG 0.457143 0.875
47 G2F 0.457143 0.875
48 2H5 0.457143 0.875
49 GCS 0.457143 0.777778
50 1GN 0.457143 0.777778
51 X6X 0.457143 0.777778
52 PA1 0.457143 0.777778
53 95Z 0.457143 0.777778
54 G3F 0.457143 0.875
55 NGR 0.454545 0.848485
56 MAL 0.454545 0.848485
57 MAN GLC 0.454545 0.848485
58 GAL BGC 0.454545 0.848485
59 GLA GLA 0.454545 0.848485
60 BGC BMA 0.454545 0.848485
61 M3M 0.454545 0.848485
62 GLA GAL 0.454545 0.848485
63 MAB 0.454545 0.848485
64 GLC GAL 0.454545 0.848485
65 B2G 0.454545 0.848485
66 LBT 0.454545 0.848485
67 BMA GAL 0.454545 0.848485
68 LAT 0.454545 0.848485
69 BGC GAL 0.454545 0.848485
70 CBI 0.454545 0.848485
71 CBK 0.454545 0.848485
72 N9S 0.454545 0.848485
73 LB2 0.454545 0.848485
74 3MG 0.444444 0.875
75 TCB 0.444444 0.8
76 GLC SGC 0.444444 0.8
77 YIO 0.441176 0.870968
78 2GS 0.432432 0.875
79 2M4 0.431818 0.848485
80 AHR AHR 0.428571 0.764706
81 GLF 0.428571 0.84375
82 FUB AHR 0.428571 0.764706
83 MAN BMA BMA 0.416667 0.848485
84 BMA MAN BMA 0.416667 0.848485
85 CTR 0.416667 0.848485
86 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.416667 0.848485
87 GLA GAL BGC 0.416667 0.848485
88 CE5 0.416667 0.848485
89 MLR 0.416667 0.848485
90 CE6 0.416667 0.848485
91 MT7 0.416667 0.848485
92 BMA BMA BMA 0.416667 0.848485
93 GLC BGC BGC BGC BGC 0.416667 0.848485
94 MAN MAN BMA BMA BMA BMA 0.416667 0.848485
95 BGC BGC BGC BGC BGC 0.416667 0.848485
96 BGC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
97 BGC GLC GLC 0.416667 0.848485
98 BMA BMA BMA BMA BMA 0.416667 0.848485
99 MAN BMA BMA BMA BMA 0.416667 0.848485
100 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
101 GLC BGC BGC BGC BGC BGC 0.416667 0.848485
102 MAN BMA BMA BMA BMA BMA 0.416667 0.848485
103 BGC BGC BGC BGC BGC BGC 0.416667 0.848485
104 BGC GLC GLC GLC 0.416667 0.848485
105 BGC BGC BGC GLC 0.416667 0.848485
106 CTT 0.416667 0.848485
107 GLA GAL GLC 0.416667 0.848485
108 MTT 0.416667 0.848485
109 GLC BGC BGC BGC 0.416667 0.848485
110 GLC GLC BGC 0.416667 0.848485
111 CEY 0.416667 0.848485
112 B4G 0.416667 0.848485
113 CE8 0.416667 0.848485
114 BMA BMA BMA BMA BMA BMA 0.416667 0.848485
115 GAL FUC 0.416667 0.848485
116 DXI 0.416667 0.848485
117 GLC BGC GLC 0.416667 0.848485
118 CT3 0.416667 0.848485
119 GAL GAL GAL 0.416667 0.848485
120 GLC GLC GLC GLC GLC 0.416667 0.848485
121 BGC BGC BGC BGC 0.416667 0.848485
122 BGC BGC BGC 0.416667 0.848485
123 BGC BGC GLC 0.416667 0.848485
124 CEX 0.416667 0.848485
125 GLC GAL GAL 0.416667 0.848485
126 BGC GLC GLC GLC GLC 0.416667 0.848485
127 GLC BGC BGC 0.416667 0.848485
128 GS1 GLC GS1 0.408163 0.8
129 SGC SGC BGC 0.408163 0.8
130 BGC BGC BGC GLC BGC BGC 0.408163 0.848485
131 GLC BGC BGC BGC BGC BGC BGC 0.408163 0.848485
132 1LL 0.405405 0.771429
133 TDG 0.405405 0.771429
134 TRE 0.405405 0.848485
135 NDG 0.404762 0.7
136 NGA 0.404762 0.7
137 NAG 0.404762 0.7
138 HSQ 0.404762 0.7
139 A2G 0.404762 0.7
140 BM3 0.404762 0.7
141 FUB AHR AHR 0.4 0.764706
142 AHR AHR AHR AHR AHR AHR 0.4 0.764706
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 74
This union binding pocket(no: 1) in the query (biounit: 1kj1.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 4TW7 37K None
2 4J6W CTP None
3 4XPL ACO None
4 3DLG GWE 2.75229
5 5YYF PHQ GLN THR ALA ARG LYS NH2 FOA 2.75229
6 3P7N FMN 2.75229
7 1NX4 AKG 2.75229
8 1JXZ BCA 3.66972
9 1NZY BCA 3.66972
10 4IN9 SER TRP PHE PRO 4.58716
11 6B92 SAH 4.58716
12 4B9K TG0 4.58716
13 6GFK SAH 4.58716
14 4W9H 3JF 4.58716
15 4W9F 3JU 4.58716
16 1M5W DXP 4.58716
17 4BKS X6C 4.58716
18 5NMX NAP 5.50459
19 5NMX FAD 5.50459
20 1OGD RIP 5.50459
21 5K2M ADP 5.50459
22 1KZN CBN 6.42202
23 3BL7 DD1 6.42202
24 2WME NAP 6.42202
25 1KEV NDP 6.42202
26 5O0J 8BR 6.42202
27 1ST0 GTG 6.42202
28 6CEP NAD 6.42202
29 6CEP OXM 6.42202
30 1UA4 AMP 6.42202
31 2GMH FAD 6.42202
32 1MFI FHC 6.42202
33 1W62 PYC 6.42202
34 4QA8 PJZ 7.33945
35 4OHY ANP 7.33945
36 5BNW 12V 7.33945
37 3VPC ADP 7.33945
38 4GYW UDP 7.33945
39 3O8M BGC 8.25688
40 3O8M GLC 8.25688
41 1YKF NAP 8.25688
42 3OTI TYD 8.25688
43 4EMV 0R9 8.25688
44 2VPQ ANP 9.17431
45 2Q7D ANP 9.17431
46 5UC4 83S 9.17431
47 2WKQ FMN 9.17431
48 4RYV ZEA 9.17431
49 3TTZ 07N 9.17431
50 1HG4 LPP 10.0917
51 2PT9 S4M 10.0917
52 2AEB ABH 10.0917
53 5LLB 6YZ 11.0092
54 6MJF SAH 11.0092
55 6GEW SAH 11.0092
56 6GEW SFG 11.0092
57 1CZA GLC 11.9266
58 1GXS BEZ 11.9266
59 1T9M FMN 11.9266
60 6H39 FGY 12.844
61 1T36 U 12.844
62 4I53 1C1 12.844
63 2B3D FAD 13.7615
64 4EES FMN 13.7615
65 4QNW FMN 14.6789
66 2GOO NDG 14.6789
67 4YRY NAD 16.5138
68 5MRH Q9Z 16.5138
69 5VZ0 ADP 16.5138
70 4Q6R 30J 17.4312
71 1UR4 B2G 19.2661
72 3CEV ARG 20.1835
73 4GGL CJC 23.8532
74 2VBF TPP 38.5321
Pocket No.: 2; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 100
This union binding pocket(no: 2) in the query (biounit: 1kj1.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 1OGZ EQU None
2 4BVM VCA None
3 4BVM PLM None
4 5FU3 BGC BGC BGC None
5 2HMT NAI None
6 1KHZ ADV None
7 2GJ5 VD3 None
8 1OGX EQU 1.83486
9 1PZ1 NAP 1.83486
10 4HIA FMN 1.83486
11 2PR5 FMN 1.83486
12 3IB8 AMP 2.75229
13 5SVV FMN 2.75229
14 4DA5 0H7 2.75229
15 2WR8 SAH 3.66972
16 5W3Y ACO 3.66972
17 5A89 ADP 3.66972
18 1C1X NAD 3.66972
19 2F57 23D 3.66972
20 3T50 FMN 4.58716
21 3B1Q NOS 4.58716
22 3TAY MN0 4.58716
23 3NIM ARG ARG ALA ALA 4.87805
24 3N0Y APC 5.50459
25 4ZCC NAI 5.50459
26 1FO3 KIF 5.50459
27 3VZS CAA 5.50459
28 4RFM 3P6 5.50459
29 4ZCC FAD 5.50459
30 3H5N ATP 5.50459
31 1VBH PEP 6.42202
32 2DIO EOD 6.42202
33 5MZI FAD 6.42202
34 5MZI FYK 6.42202
35 5FLJ QUE 6.42202
36 1EWJ BLM 6.42202
37 1Q79 3AT 6.42202
38 1OKE BOG 6.42202
39 4K3H 1OM 7.33945
40 4WUJ FMN 7.33945
41 3D91 REM 7.33945
42 3PTQ NFG 7.33945
43 2ZO9 MLI 8.25688
44 3ZXR IQ1 8.25688
45 3ZXR P3S 8.25688
46 3NT6 COA 8.25688
47 2EQA AMP 8.25688
48 4PIV 2W4 8.25688
49 2IO8 ADP 8.25688
50 4YGF AZM 8.25688
51 2XZ9 PYR 8.25688
52 2J62 GSZ 8.25688
53 2Q0D ATP 9.17431
54 3NW7 LGV 9.17431
55 3EKK GS2 9.17431
56 1RP7 TZD 9.17431
57 5AZ1 NDP 9.17431
58 1C9K 5GP 9.17431
59 2VYT MLZ 9.17431
60 1OJK GLC BGC 9.17431
61 2Z6C FMN 9.17431
62 1OJJ GLC GAL 9.17431
63 1XE7 GUN 9.17431
64 1KQW RTL 9.17431
65 2Z6D FMN 10.0917
66 4IGQ THR M3L GLN 10.0917
67 3I3X U22 10.0917
68 5MWK RAM ARA GAL 8PK 8OQ RAM 10.0917
69 1M9H NAD 10.0917
70 4ZDC CO8 10.0917
71 1M7Y PPG 11.0092
72 4R38 RBF 11.0092
73 1XNK XS2 11.0092
74 5X1M DHB 11.9266
75 6GG9 FMN 11.9266
76 1DY4 SNP 11.9266
77 5XIJ ANP 11.9266
78 5XIJ 873 11.9266
79 5TO8 7FM 12.844
80 2CM4 RCL 13.7615
81 5KOR GDP 13.7615
82 1V97 MTE 13.7615
83 4G31 0WH 14.6789
84 1GSA ADP 15.5963
85 4P42 PEE 15.5963
86 3IS2 FAD 17.4312
87 3D72 FAD 17.4312
88 1H4H XYP XYS XYP 17.4312
89 2JEN GLC GLC BGC XYS BGC XYS 17.4312
90 1VP5 NAP 17.4312
91 4A05 CTT 20.1835
92 4B1M FRU FRU 21.1009
93 1JJE BYS 22.0183
94 4GCZ FMN 22.9358
95 4MVK ACE VAL PHE PHE ALA GLU ASP NH2 22.9358
96 3K4Z CBI 25.6881
97 2RFZ CTR 29.3578
98 1EWF PC1 31.1927
99 4LED XXR 33.945
100 4GC1 MAN MAN 43.1193
Pocket No.: 3; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 89
This union binding pocket(no: 3) in the query (biounit: 1kj1.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 5T9C G3P None
2 2QV6 GTP None
3 2Z6I FMN None
4 3DJV C3P 1.83486
5 3DLS ADP 1.83486
6 4N65 AQN 2.75229
7 4N65 FMN 2.75229
8 4HWS 1B3 2.75229
9 6BXI ANP 3.66972
10 1BXG NAD 3.66972
11 2QQ0 ADP 5.50459
12 2QQ0 TMP 5.50459
13 2QQ0 ANP 5.50459
14 2QQ0 THM 5.50459
15 3PP0 03Q 5.50459
16 2V5X V5X 5.50459
17 4A4X JUP 5.50459
18 1N9L FMN 5.50459
19 6GU6 1QK 5.50459
20 3U7S 017 6.06061
21 4R81 FMN 6.31068
22 4XJ6 GH3 6.42202
23 3NTY 5P3 6.42202
24 5M1Z 6LW AHR 6.42202
25 2OVW CBI 6.42202
26 5K21 6QF 6.42202
27 6C4A PYR 6.42202
28 2OO0 XAP 6.42202
29 2B8T THM 7.33945
30 1U1B PAX 7.33945
31 3SXS PP2 7.33945
32 4FG8 ATP 7.33945
33 2C42 PYR 7.33945
34 2C42 TPP 7.33945
35 5ZCM NDP DTT 7.33945
36 1XPM CAA 8.25688
37 3HB5 E2B 8.25688
38 5OO5 UUA 8.25688
39 1Q1R FAD 8.25688
40 1QY1 PRZ 8.25688
41 1EM6 NBG 9.17431
42 4I4S LAT 9.17431
43 5ZA2 NXL 9.17431
44 1UNH IXM 9.17431
45 5OX6 A1Z 9.17431
46 2YI0 YI0 9.17431
47 1XG4 ICT 9.17431
48 4I6G FAD 10.0917
49 4UP3 FAD 10.0917
50 4OCX MT1 10.0917
51 4YHQ G10 10.101
52 5DXT 5H5 11.0092
53 2IV2 MGD 11.0092
54 3KF3 FRU 11.0092
55 3CV6 NAP 11.0092
56 3CV6 HXS 11.0092
57 1P9P SAH 11.0092
58 2ORV 4TA 11.9266
59 1W4R TTP 11.9266
60 3F70 MLZ 11.9266
61 1UU6 BGC BGC BGC BGC 11.9266
62 3ETH ATP 11.9266
63 5JZJ AN2 11.9266
64 3KRB NAP 12.844
65 2JJK R15 12.844
66 4X17 SIA SIA 12.844
67 3UG4 AHR 12.844
68 4X17 SIA 12.844
69 5IXG OTP 13.7615
70 3ZG6 APR 13.7615
71 1EKO NAP 13.7615
72 2X05 X05 13.7615
73 1G42 CP2 14.6789
74 6C9B EGV 15.5963
75 3ZO7 K6H 17.0213
76 2Y88 2ER 18.3486
77 5UPK ANP 18.75
78 6FKW PQQ 20.1835
79 4ZU4 4TG 22.0183
80 1LGT BP3 22.0183
81 4XF6 ADP 23.8532
82 4XF6 LIP 23.8532
83 4XF6 INS 23.8532
84 4IJR NDP 24.7706
85 1PG4 COA 25.6881
86 1PG4 PRX 25.6881
87 5AE9 OKO 27.5229
88 3PG7 PTY 27.5229
89 2RG0 CTT 29.3578
Pocket No.: 4; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 28
This union binding pocket(no: 4) in the query (biounit: 1kj1.bio2) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 2C78 PUL 2.75229
2 1C4Q GLA GAL BGC 2.89855
3 5ML3 DL3 4.58716
4 5UIJ TYD 4.58716
5 1K97 ASP 4.58716
6 1K97 CIR 4.58716
7 3R1Z ALA GLU 5.50459
8 1P6O HPY 5.50459
9 3BJK CIT 5.50459
10 3ALN ANP 5.50459
11 5B09 4MX 5.76923
12 6C02 APC 7.33945
13 5LGD PLM 7.33945
14 5HGR 45D 8.25688
15 1FLR FLU 10.0917
16 1T66 FLU 10.0917
17 2GQ2 NAP 11.9266
18 5Y4K AKR 12.844
19 2C49 ADN 13.7615
20 1YKD CMP 15.5963
21 4P7X AKG 15.5963
22 4P7X YCP 15.5963
23 5GP7 SER LEU SER ARG THR PRO ALA ASP GLY ARG 15.5963
24 5U98 1KX 15.5963
25 2ZMF CMP 16.5138
26 4MNS 2AX 19.2661
27 6F30 UD1 24.7706
28 2QPU QPU 30.2752
Pocket No.: 5; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 56
This union binding pocket(no: 5) in the query (biounit: 1kj1.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 2I74 MAN MAN MAN MAN None
2 2Q4H AMP None
3 3G08 FEE 1.83486
4 2YDW WSH 1.83486
5 5FPX GLY SER SER HIS HIS HIS HIS HIS 2.75229
6 4WOP CTP 3.55556
7 1TKK ALA GLU 3.66972
8 5W3X ACO 3.66972
9 4Q5M ROC 3.66972
10 2P3B 3TL 4.0404
11 4HK8 XYP XYP XYP XYP XYP XYP 4.58716
12 4RGQ 13P 4.58716
13 5W10 CMP 5.50459
14 5IXH OTP 5.50459
15 1U0A BGC BGC BGC BGC 5.50459
16 4ITU 1HS 5.50459
17 5DNL 5DL 5.50459
18 3MF2 AMP 5.50459
19 6B5G NAD 5.50459
20 4N2R FUB 5.50459
21 6C1S EFV 6.42202
22 2OVD DAO 6.42202
23 1QCI ADE 6.42202
24 1TYU GLA MAN RAM TYV GLA MAN RAM TYV 6.42202
25 4WUP 3UF 6.42202
26 2X5W K2B 7.33945
27 1KC7 PPR 7.33945
28 5LDQ NAP 7.33945
29 5YBN AKG 7.33945
30 5XEG AKG 7.33945
31 1N5S ADL 8.25688
32 2VRQ XYP XYP AHR 8.25688
33 5ZM4 9FU 8.25688
34 5ZM4 AKG 8.25688
35 4NJS G08 9.09091
36 5NCJ HL5 9.17431
37 3QXV MTX 10.0917
38 5GP0 GPP 11.9266
39 5T2Y 753 11.9266
40 5ENQ 5QE 12.844
41 2E3N 6CM 12.844
42 1FMB HYB 12.844
43 2GWH PCI 13.7615
44 4XCZ T3Q 14.6789
45 1IZE IVA VAL VAL STA ALA STA 14.6789
46 4WW8 VD9 15.5963
47 4ORR PE3 17.4312
48 3OYZ ACO 17.4312
49 5XIO ANP 17.4312
50 5M7S NHT 18.3486
51 5UN9 NHT 18.3486
52 3OZ2 OZ2 22.0183
53 3EUT DCR 22.0183
54 5T2Z 017 23.2323
55 4L2I FAD 23.8532
56 4L2I NAD 23.8532
Pocket No.: 6; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 18
This union binding pocket(no: 6) in the query (biounit: 1kj1.bio2) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 3DER ALA LYS None
2 2ARC ARA 4.58716
3 1DZK PRZ 5.50459
4 2ABS ACP 5.50459
5 2YNE YNE 6.42202
6 2YNE NHW 6.42202
7 5X7Q GLC GLC GLC BGC 6.42202
8 2TPS TPS 7.33945
9 5YU3 NAD 7.33945
10 5YU3 PRO 7.33945
11 5NEA 8V8 9.17431
12 5HV0 AKG 10.0917
13 1NWW HPN 10.0917
14 3DST GRG 11.9266
15 3GNP SOG 11.9266
16 3DGB MUC 15.5963
17 1MEX RAC 15.5963
18 5KBZ 3B2 22.0183
Pocket No.: 7; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 56
This union binding pocket(no: 7) in the query (biounit: 1kj1.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1QIN GIP None
2 2NSX IFM None
3 2I6A 5I5 None
4 6BU0 IHP None
5 1T5B FMN 2.75229
6 4MBY BGC SIA GAL 2.75229
7 3V4S ATP 3.66972
8 1I82 BGC BGC 4.58716
9 5O42 9JW 4.58716
10 5O42 BGC 4.58716
11 5O42 NAD 4.58716
12 3JDW ORN 5.50459
13 1GP6 DH2 5.50459
14 1GP6 QUE 5.50459
15 1GP6 SIN 5.50459
16 3VZS NAP 5.50459
17 1U08 PLP 6.42202
18 1RM0 NAI 6.42202
19 4R78 AMP 6.42202
20 2GSU AMP 7.33945
21 3T64 DU3 7.33945
22 5LU5 M7P 7.33945
23 5IH9 6BF 7.33945
24 1QRD FAD 7.33945
25 4OKZ 3E9 7.33945
26 5A61 3PO 8.25688
27 1RKD RIB 8.25688
28 1RKD ADP 8.25688
29 3O03 GCO 9.17431
30 4CRL C1I 9.17431
31 5DRB 5FJ 9.17431
32 5WPJ NDP 9.17431
33 5HA0 LTD 10.0917
34 5I8T LAC 11.0092
35 2RDQ AKG 12.844
36 4OAG ADP 12.844
37 5M67 NAD 13.7615
38 5M67 ADE 13.7615
39 3TXO 07U 14.6789
40 3JRS A8S 15.5963
41 2CHN NGT 15.5963
42 5W0N UPU 16.5138
43 2H6T IVA VAL VAL STA ALA STA 16.5138
44 6F3M ADN 18.3486
45 4O1Z MXM 18.3486
46 2IFW ACE PHE LYS PHE PSA LEU AAR 19.2661
47 5HMR FDZ 20.1835
48 4XDA RIB 23.8532
49 4S28 SAH 25.6881
50 4S28 AIR 25.6881
51 2B9H ADP 26.6055
52 2B9F ADP 26.6055
53 2B9I ADP 26.6055
54 2B9J ADP 26.6055
55 1W2T SUC GLA 30.2752
56 4QDF 30Q 38.5321
Pocket No.: 8; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 28
This union binding pocket(no: 8) in the query (biounit: 1kj1.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 6D6L FY4 None
2 4U0W 16G 1.83486
3 2YBQ UP2 2.75229
4 4NV0 MG7 2.75229
5 5GM5 CBI 2.75229
6 5A89 FMN 3.66972
7 3AI3 SOL 3.66972
8 2GQR ADP 4.58716
9 2MJP ANP 4.58716
10 5MM0 GDD 5.50459
11 3VSS FRU 5.50459
12 3UXH UXH 6.42202
13 3UXH FAD 6.42202
14 6A1G 9OL 6.42202
15 5O9W AKG 7.33945
16 4H3Q ANP 8.25688
17 3WCZ NAP 8.25688
18 1DMR PGD 9.17431
19 3O0Q TTP 11.0092
20 3K5I AIR 11.9266
21 3K5I ADP 11.9266
22 1VBJ NAP 15.5963
23 3H4T UDP 16.5138
24 5DEX 5E0 18.3486
25 3WVR AMP 21.1009
26 2WA4 069 22.0183
27 1JNR FAD 22.0183
28 2YNM PMR 27.5229
Pocket No.: 9; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 26
This union binding pocket(no: 9) in the query (biounit: 1kj1.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1UJP CIT 2.75229
2 4Z87 5GP 4.58716
3 5VM6 9EG 4.58716
4 4C5N ACP 5.50459
5 3PIJ FRU 5.50459
6 1J84 BGC BGC BGC BGC 5.50459
7 5T67 JHZ 6.42202
8 3RGA LSB 6.42202
9 4Z9D NAD 6.42202
10 4ZZW CBI 7.33945
11 3PE2 E1B 7.33945
12 3ANY 2A3 8.25688
13 2F2H XTG 8.25688
14 4CQ5 TCA 8.25688
15 3WG6 NDP 9.17431
16 1FDJ 2FP 10.0917
17 6FE1 V14 11.0092
18 1S20 NAD 11.0092
19 2ADD SUC 11.9266
20 5C3R HMU 13.7615
21 5C3R AKG 13.7615
22 4EYG VNL 15.5963
23 4H6B 10X 16.5138
24 4H6B 10Y 16.5138
25 5JSD 1GN ACY GAL ACY 1GN BGC GAL BGC 22.9358
26 4UXH T5A 24.7706
Pocket No.: 10; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 5
This union binding pocket(no: 10) in the query (biounit: 1kj1.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 4MA6 28E 7.33945
2 5GWE GWM 10.0917
3 5XJN 88L 10.0917
4 3FW9 SLX 19.2661
5 2QPU QPS 30.2752
Pocket No.: 11; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 7
This union binding pocket(no: 11) in the query (biounit: 1kj1.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 5A8E XTK None
2 6G33 5ID 6.42202
3 6GZD LCI 7.33945
4 4HGD KGT 7.33945
5 5X1M THG 11.9266
6 6G9I CXX 16.5138
7 2RDK MAN MAN 16.5138
Pocket No.: 12; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 14
This union binding pocket(no: 12) in the query (biounit: 1kj1.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 1MXH DHF 1.83486
2 1MXH NAP 1.83486
3 1EYE PMM 2.75229
4 5DJT FMN 3.66972
5 4C3Y FAD 5.50459
6 6GBC AMP 6.42202
7 5BU3 4W9 7.33945
8 3VPB GLU 8.92857
9 6F6D AKG 10.0917
10 2AMV BIN 11.9266
11 2GFD RDA 22.0183
12 2AG4 LP3 22.0183
13 2AG4 OLA 22.0183
14 5Z84 PEK 30.5085
Pocket No.: 13; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 1
This union binding pocket(no: 13) in the query (biounit: 1kj1.bio1) has 6 residues
No: Leader PDB Ligand Sequence Similarity
1 3UH0 TSB 8.25688
Pocket No.: 14; Query (leader) PDB : 1KJ1; Ligand: MAN; Similar sites found with APoc: 27
This union binding pocket(no: 14) in the query (biounit: 1kj1.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4KXL 6C6 None
2 4EA7 JB2 None
3 4EA7 COA None
4 2EIX FAD None
5 4TMK T5A 2.75229
6 5DJU FMN 3.66972
7 1UM0 FMN 5.50459
8 4I4Z 2NE 6.42202
9 6GBV FMN 6.42202
10 1B55 4IP 6.42202
11 5UFC DR2 7.33945
12 2Z77 HE7 7.33945
13 3WCA FPS 8.25688
14 2XWL CTP 8.25688
15 5UF1 FUC GAL NAG 9.17431
16 3PXP MYR 9.17431
17 4WNP 3RJ 10.0917
18 4MCC 21X 10.0917
19 2BOS GLA GAL GLC 10.2941
20 2BOS GLA GAL 10.2941
21 3A6T 8OG 11.0092
22 5L8L ADP 12.844
23 2ICY UPG 13.7615
24 4PFC 2QX 13.7615
25 1E4E ADP 15.5963
26 3II1 BGC 18.3486
27 4RGA 3PV 21.1009
APoc FAQ
Feedback