Receptor
PDB id Resolution Class Description Source Keywords
1LFD 2.1 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITH THE RAS-INTERACTING DOMAIN OF RALGDS RATTUS NORVEGICUS COMPLEX (RALGDS/RAS) RAL EFFECTOR INTERACTION
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF RAS WITH RALGDS. NAT.STRUCT.BIOL. V. 5 422 1998
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP B:1380;
D:2380;
Valid;
Valid;
none;
none;
submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
MG B:1373;
D:2373;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1LFD 2.1 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITH THE RAS-INTERACTING DOMAIN OF RALGDS RATTUS NORVEGICUS COMPLEX (RALGDS/RAS) RAL EFFECTOR INTERACTION
Ref.: STRUCTURAL BASIS FOR THE INTERACTION OF RAS WITH RALGDS. NAT.STRUCT.BIOL. V. 5 422 1998
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 218 families.
1 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 176 families.
1 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 143 families.
1 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 GDP 0.839506 0.973684
3 GP3 0.82716 0.948718
4 GTP 0.809524 0.973684
5 GNH 0.807229 0.986842
6 G1R 0.77907 0.961039
7 GCP 0.77907 0.948718
8 GSP 0.770115 0.925
9 5GP 0.756098 0.960526
10 G 0.756098 0.960526
11 G2R 0.747253 0.936709
12 GMV 0.747126 0.948718
13 GAV 0.714286 0.936709
14 GP2 0.712644 0.936709
15 G2P 0.711111 0.936709
16 Y9Z 0.708333 0.880952
17 GDP MG 0.696629 0.9
18 GDD 0.690722 0.936709
19 GDC 0.690722 0.936709
20 GKE 0.690722 0.936709
21 GDP BEF 0.688889 0.878049
22 G5P 0.686869 0.948718
23 GPG 0.684211 0.936709
24 GTG 0.683673 0.91358
25 GFB 0.683673 0.936709
26 GDR 0.683673 0.936709
27 JB2 0.68 0.936709
28 GKD 0.68 0.936709
29 G3A 0.676768 0.948718
30 6CK 0.676768 0.91358
31 GDX 0.673267 0.948718
32 ALF 5GP 0.67033 0.86747
33 GTP MG 0.666667 0.9
34 BEF GDP 0.666667 0.86747
35 YGP 0.663265 0.879518
36 GCP G 0.659574 0.911392
37 GPD 0.656863 0.902439
38 GDP AF3 0.645833 0.86747
39 GDP ALF 0.645833 0.86747
40 JB3 0.641509 0.925
41 DBG 0.640351 0.974359
42 G3D 0.638298 0.960526
43 G4P 0.625 0.960526
44 GMP 0.621951 0.857143
45 NGD 0.62037 0.936709
46 GGM 0.618182 0.925926
47 0O2 0.616162 0.960526
48 G G 0.61 0.911392
49 2MD 0.603604 0.870588
50 CAG 0.60177 0.904762
51 U2G 0.590909 0.91358
52 FEG 0.590909 0.858824
53 GDP 7MG 0.590476 0.888889
54 MGD 0.587719 0.870588
55 ZGP 0.585586 0.848837
56 CG2 0.580357 0.91358
57 ANP 0.568421 0.922078
58 PGD 0.567797 0.902439
59 MD1 0.567797 0.870588
60 3GP 0.56044 0.922078
61 TPG 0.558333 0.822222
62 GH3 0.55 0.948052
63 FE9 0.546219 0.778947
64 GPX 0.539216 0.922078
65 G4M 0.539062 0.860465
66 DGI 0.536082 0.9
67 BGO 0.535088 0.901235
68 IDP 0.53125 0.947368
69 DGT 0.53 0.9
70 2GP 0.526882 0.935065
71 G1R G1R 0.520325 0.901235
72 I2C FE2 CMO CMO 0.516667 0.811111
73 U A G G 0.512605 0.911392
74 AGO 0.504202 0.91358
75 G A A A 0.504202 0.9
76 P2G 0.5 0.860759
77 G1G 0.5 0.902439
78 MGP 0.49505 0.936709
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 DGP 0.474227 0.8875
83 DG 0.474227 0.8875
84 G G U 0.473684 0.911392
85 IMP 0.463918 0.934211
86 G2Q 0.462963 0.936709
87 GPC 0.459677 0.858824
88 G C 0.459016 0.878049
89 GTA 0.448276 0.91358
90 G7M 0.444444 0.924051
91 MAP 0.439252 0.898734
92 G G G RPC 0.435484 0.853659
93 B4P 0.434343 0.871795
94 AP5 0.434343 0.871795
95 ADP 0.434343 0.896104
96 A2D 0.43299 0.871795
97 U G A 0.431655 0.86747
98 G G G C 0.426357 0.890244
99 SGP 0.425743 0.807229
100 AU1 0.425743 0.922078
101 BA3 0.424242 0.871795
102 35G 0.423077 0.909091
103 PCG 0.423077 0.909091
104 A G C C 0.423077 0.888889
105 C2E 0.423077 0.897436
106 APC G U 0.421875 0.864198
107 ATP 0.421569 0.896104
108 ACQ 0.419048 0.873418
109 5GP 5GP 0.419048 0.860759
110 AQP 0.417476 0.896104
111 5FA 0.417476 0.896104
112 01G 0.417391 0.880952
113 UNP 0.415842 0.810127
114 AN2 0.415842 0.909091
115 6AD 0.415094 0.821429
116 ITT 0.411765 0.846154
117 M33 0.411765 0.860759
118 G C C C 0.410448 0.901235
119 G U34 0.408 0.86747
120 ACP 0.407767 0.873418
121 APR 0.403846 0.871795
122 AR6 0.403846 0.871795
123 DG DG 0.403509 0.845238
124 A4P 0.403226 0.848837
125 UCG 0.402985 0.888889
126 AD9 0.4 0.873418
127 SAP 0.4 0.851852
128 AGS 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1LFD; Ligand: GNP; Similar sites found: 386
This union binding pocket(no: 1) in the query (biounit: 1lfd.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1GXU 2HP 0.0002066 0.50784 None
2 1NJF AGS 0.0002042 0.4391 1.79641
3 1NJF ADP 0.0001495 0.43155 1.79641
4 1OSS BEN 0.03263 0.40231 1.79641
5 2VOH CIT 0.02263 0.40245 1.91083
6 2Q2Y ADP 0.0009659 0.44636 2.39521
7 2Q2Y MKR 0.001092 0.44295 2.39521
8 1VBO MAN 0.007032 0.45003 2.68456
9 1VBO MAN MAN MAN 0.006114 0.44485 2.68456
10 4FRZ ADP 0.000006677 0.41062 2.99401
11 1UPT GTP 0.00000000001615 0.76842 3.44828
12 1XP8 AGS 0.0005939 0.48683 3.44828
13 1HTW ADP 0.0001205 0.40903 3.44828
14 1XXR MAN 0.03599 0.40365 3.44828
15 1MAI I3P 0.04938 0.40232 3.44828
16 2Y65 ADP 0.000006477 0.4004 3.44828
17 3TK1 GDP 0.0000000005215 0.80799 3.59281
18 4TTQ ATP 0.0003509 0.49222 3.59281
19 3H86 AP5 0.001033 0.43898 3.59281
20 3COB ADP 0.000001414 0.41554 3.59281
21 4MN7 SME 0.02472 0.40066 4.02685
22 5J6Y BGC 0.01731 0.41893 4.19162
23 5J6Y GLC 0.01731 0.41893 4.19162
24 1BO4 COA 0.02305 0.40218 4.19162
25 3ZQ6 ADP ALF 0.00001688 0.50051 4.5977
26 5L3W GDP 0.00001356 0.45238 4.5977
27 2J5V PCA 0.0242 0.42802 4.5977
28 2FH5 GTP 0.000000000005734 0.79844 4.79042
29 3DC4 ADP 0.000001801 0.62405 4.79042
30 2BEK ATP 0.0001059 0.4795 4.79042
31 4GOX A3P 0.002385 0.41875 4.79042
32 2GMP NAG MAN 0.02041 0.41659 4.79042
33 1BG2 ADP 0.000001861 0.40011 4.79042
34 1G6H ADP 0.000005282 0.62149 5.38922
35 2OG2 MLI 0.00006994 0.55224 5.38922
36 3B9Q MLI 0.0001104 0.53997 5.38922
37 3UIE ANP 0.0001104 0.5046 5.38922
38 1OYY AGS 0.003633 0.44204 5.38922
39 1G8S MET 0.008626 0.43282 5.38922
40 2W58 ADP 0.0000006812 0.67741 5.74713
41 3LRE ADP 0.0000005765 0.66949 5.74713
42 2IYL GDP 0.000005056 0.58319 5.74713
43 2ZFI ADP 0.0000111 0.56633 5.74713
44 4OHY ANP 0.00009712 0.4722 5.74713
45 5HR5 ADP 0.0005601 0.40385 5.74713
46 3BOS CDP 0.0002422 0.50017 5.78512
47 5LB3 ADP 0.0001456 0.51776 5.98802
48 1F5N GNP 0.000009772 0.49924 5.98802
49 5J1J ANP 0.00002749 0.47821 5.98802
50 3FVQ ATP 0.0003694 0.46074 5.98802
51 5GJC ATP 0.00006716 0.40891 5.98802
52 2Z5F A3P 0.007482 0.40417 5.98802
53 4RZ3 ADP 0.00005378 0.4453 6.58683
54 3RC3 ANP 0.01212 0.42035 6.58683
55 2GWH A3P 0.006627 0.41324 6.58683
56 5KUT GDP 0.000000002107 0.55641 6.87831
57 5EE5 GTP 0.000000000002469 0.73611 6.89655
58 1G7C 5GP 0.0000004824 0.6336 6.89655
59 1TQ4 GDP 0.00000006077 0.62437 6.89655
60 3NHB ADP 0.0000227 0.57389 6.89655
61 4YDS ATP 0.00003088 0.55989 6.89655
62 2DPY ADP 0.00009462 0.53461 6.89655
63 2OZE AGS 0.00008552 0.49323 6.89655
64 3ZS9 ADP ALF 0.00001777 0.48976 6.89655
65 2WOJ ADP ALF 0.00002325 0.48519 6.89655
66 3B7G ANP 0.0006169 0.47459 6.89655
67 1P9B GDP 0.0003647 0.47008 6.89655
68 4E03 ADP 0.00001302 0.44527 6.89655
69 5I34 GDP 0.00006255 0.42564 6.89655
70 1QAN SAH 0.003731 0.41067 6.89655
71 1YXM ADE 0.03533 0.4068 6.89655
72 1GOJ ADP 0.0000004303 0.67911 7.18563
73 2CBZ ATP 0.000001936 0.64972 7.18563
74 3ZFD ANP 0.00000005066 0.52868 7.18563
75 2GK6 ADP 0.00119 0.47743 7.18563
76 1QF5 RPL 0.003301 0.46156 7.18563
77 2X7I CIT 0.002616 0.4491 7.18563
78 1M7G ADX 0.00125 0.43142 7.18563
79 2PEZ GGZ 0.00182 0.4261 7.18563
80 2PEZ DAT 0.00182 0.4261 7.18563
81 1M7G ADP 0.001572 0.42441 7.18563
82 1M7G AV2 0.00002107 0.41601 7.18563
83 1WY7 SAH 0.004198 0.40854 7.18563
84 2OFW ADX 0.001984 0.43199 7.69231
85 2XT3 ADP 0.000001672 0.64001 7.78443
86 2WHX ADP 0.00003353 0.56425 7.78443
87 3E70 GDP 0.00001017 0.44977 7.78443
88 1DNP MHF 0.00586 0.43902 7.78443
89 2JLR ANP 0.0002662 0.41231 7.78443
90 3WY9 GDP 0.0000000002847 0.80691 8.04598
91 3WYA GDP 0.000000001184 0.76254 8.04598
92 2C78 GNP 0.00000000002255 0.76228 8.04598
93 5HCN GCP 0.0000000007453 0.76002 8.04598
94 2X77 GDP 0.0000000008011 0.75851 8.04598
95 2C77 GNP 0.0000000000352 0.68199 8.04598
96 3A4M ADP 0.00001152 0.58216 8.04598
97 5M04 GDP 0.000000002153 0.5395 8.04598
98 3BFV ADP 0.00009034 0.52133 8.04598
99 5FTB ANP 0.0001925 0.49322 8.04598
100 1U0J ADP 0.0008649 0.47855 8.04598
101 5FHD ADP ALF 0.0004424 0.45735 8.04598
102 3IO3 ADP 0.00005755 0.44854 8.04598
103 4YS0 ADP 0.001607 0.44103 8.04598
104 3QKT ANP 0.001444 0.4244 8.04598
105 2CE7 ADP 0.0001778 0.40719 8.04598
106 1X6V ADP 0.001635 0.40277 8.04598
107 1O8B ABF 0.02973 0.40042 8.04598
108 5IRR GSP 0.00000001347 0.64461 8.38323
109 2RCN GDP 0.00000000007442 0.58541 8.38323
110 4CVN ADP 0.00001872 0.57119 8.38323
111 3T34 GDP 0.00001442 0.51098 8.38323
112 4IDN GNP 0.00002566 0.50559 8.38323
113 4MKF AP5 0.004377 0.41959 8.38323
114 3BFX A3P 0.004554 0.41698 8.38323
115 3FYH ADP 0.004255 0.40524 8.38323
116 4WOP CTP 0.00005758 0.45391 8.44444
117 1D2E GDP 0.00000001808 0.67335 8.98204
118 1V8K ANP 0.0000002314 0.64937 8.98204
119 2HF9 GSP 0.0000001606 0.62141 8.98204
120 3FKQ ATP 0.00001042 0.5397 8.98204
121 3KTA AP5 0.0004433 0.47107 8.98204
122 4IOK ADP 0.001258 0.42679 8.98204
123 4IOK XPO 0.0009404 0.42432 8.98204
124 4MKG AP5 0.003302 0.42374 8.98204
125 3N5C GDP 0.000000004256 0.7351 9.1954
126 2A5F GTP 0.0000000001898 0.68715 9.1954
127 3PQC GDP 0.00000004555 0.6641 9.1954
128 1JI0 ATP 0.00003152 0.55942 9.1954
129 3IIJ ADP 0.00002373 0.55002 9.1954
130 5I0H ADP BEF 0.0000005587 0.52792 9.1954
131 2OBM ADP 0.0003111 0.51557 9.1954
132 5BQ5 ADP BEF 0.00009777 0.50709 9.1954
133 3DKP ADP 0.0005864 0.4812 9.1954
134 5K5Z ANP 0.00004581 0.4756 9.1954
135 1W5T ADP 0.002483 0.4325 9.1954
136 1W5T ANP 0.00167 0.43239 9.1954
137 2BIF ANP 0.001657 0.42913 9.1954
138 2BIF SIN 0.002921 0.42913 9.1954
139 1LVG ADP 0.000004504 0.42363 9.1954
140 2ZPA ADP 0.0002498 0.42261 9.1954
141 1L2T ATP 0.001657 0.42196 9.3617
142 2NCD ADP 0.000008145 0.59682 9.58084
143 3DOE GTP 0.00000000007247 0.7312 9.69697
144 1APZ ASP 0.03335 0.40182 9.92908
145 1D2N ANP 0.00114 0.43957 10.1796
146 1F9V ADP 0.000006797 0.41179 10.1796
147 5IFS ADP 0.0002308 0.40503 10.1796
148 4J0Q GDP 0.000000001141 0.77638 10.3448
149 1WDT GTP 0.000000001813 0.69954 10.3448
150 1W7J ADP BEF 0.000009957 0.54059 10.3448
151 1VHT BA3 0.001123 0.45712 10.3448
152 1YTM ATP 0.0008888 0.44425 10.3448
153 4V03 ADP 0.00001676 0.44389 10.3448
154 5K9B FMN 0.005813 0.41229 10.3448
155 5H56 TYD 0.003588 0.41125 10.3448
156 5H56 ADP 0.003588 0.41125 10.3448
157 4U60 SIA GAL NGA 0.02431 0.4109 10.3448
158 4WEI GLC GAL 0.03485 0.40336 10.3448
159 1TZD ADP 0.03493 0.40077 10.3448
160 1Y63 ADP 0.00003473 0.54185 10.7784
161 1IN4 ADP 0.0003029 0.46898 10.7784
162 5VGR GDP 0.0004072 0.46792 10.7784
163 2XIQ 5AD 0.03332 0.40183 10.7784
164 1XEX ATP 0.004723 0.40049 10.7784
165 4IEE AGS 0.0006302 0.48552 11.3772
166 4R98 GNH 0.0000009204 0.47867 11.3772
167 4XGU ADP 0.0003823 0.46916 11.3772
168 1YRB GDP 0.0000000001785 0.76576 11.4943
169 1KK1 GNP 0.00000000524 0.74284 11.4943
170 1AZT GSP 0.0000000001843 0.65945 11.4943
171 4R43 GDP 0.0002697 0.49787 11.4943
172 3H4S ADP 0.00000207 0.41118 11.4943
173 1UKZ ADP 0.007285 0.40247 11.4943
174 2XTZ GSP 0.00000000007804 0.7119 11.976
175 2WJG GDP 0.00000001637 0.70619 11.976
176 5GOE GDP 0.00000001889 0.68211 11.976
177 1JJV ATP 0.00005849 0.55083 11.976
178 4LJ9 ACP 0.001012 0.4695 11.976
179 2WZF BGC 0.00848 0.43547 11.976
180 4FCW ADP 0.0002913 0.40096 11.976
181 2WJH GDP 0.00000001738 0.54094 12.0482
182 2WJH FLC 0.000001767 0.48051 12.0482
183 1F2U ATP 0.002582 0.40538 12.0805
184 4NON GDP 0.0000001733 0.55699 12.5749
185 3P4X ADP 0.00004873 0.41208 12.5749
186 1FP6 ADP 0.00001286 0.54192 12.6437
187 4PJ3 ANP 0.003777 0.42817 12.6437
188 2VVG ADP 0.0000004988 0.41309 12.6437
189 4P32 ADP 0.003989 0.41267 12.6437
190 5MVR ADP 0.0001123 0.40181 12.6437
191 2F6U CIT 0.03454 0.40101 12.6437
192 1JJ7 ADP 0.000004633 0.6256 13.1737
193 5J1S ATP 0.002038 0.41829 13.1737
194 1R4A GNP 0.00000000006275 0.72456 13.7255
195 3B5J 12D 0.00005031 0.54887 13.7725
196 1G3Q ADP 0.00002985 0.53803 13.7725
197 4QM7 GTP 0.0001375 0.51232 13.7725
198 4YMU ATP 0.00005116 0.40045 13.7725
199 4WZA ACP 0.00002363 0.53523 13.7931
200 4WZA ADP 0.00002363 0.53523 13.7931
201 4ZG4 VO4 ADP 0.000001211 0.52989 13.7931
202 5N69 ADP 0.00002498 0.52864 13.7931
203 3TBK ANP 0.000814 0.48601 13.7931
204 5TSH ANP 0.00006527 0.4064 13.7931
205 3L6C MLI 0.03035 0.4049 13.7931
206 5TSH ADP 0.00003767 0.40099 13.7931
207 5L3R GCP 0.000002174 0.53948 14.3713
208 2PL3 ADP 0.0004032 0.49534 14.3713
209 1SKQ GDP 0.00000001192 0.72476 14.9425
210 3FWY ADP 0.000004795 0.47691 14.9425
211 1Z6T ADP 0.0002655 0.4763 14.9425
212 2FNA ADP 0.0002551 0.46331 14.9425
213 5XDR ADP 0.00108 0.46286 14.9425
214 5KGS 6SR 0.01455 0.40098 14.9425
215 4BAS GNP 0.000000001835 0.63025 15.0754
216 4NCN GTP 0.000000000003049 0.7884 15.5689
217 4TMZ GSP 0.00000000000579 0.77682 15.5689
218 1OFH ADP 0.0001596 0.41244 15.5689
219 4KAX GTP 0.00000000004258 0.69157 16.092
220 1CS4 GSP 0.0000000002113 0.6692 16.092
221 4WZ6 ATP 0.00003762 0.56236 16.092
222 1KK8 BEF ADP 0.00001053 0.53949 16.092
223 1B7T ADP 0.00004387 0.52349 16.092
224 5MZN ADP 0.001186 0.47751 16.092
225 2C9O ADP 0.0002664 0.46688 16.092
226 2FAH GDP 0.0006235 0.46425 16.092
227 5IRN ADP 0.0001356 0.41915 16.092
228 4D81 ADP 0.0001961 0.41366 16.092
229 1ZCB GDP 0.0000001447 0.58113 16.1677
230 3AB3 GDP 0.00000002583 0.58081 16.1677
231 2CHG ANP 0.0002078 0.4811 16.1677
232 2AWN ADP 0.000000695 0.67842 16.7665
233 3RLF ANP 0.0005435 0.44547 16.7665
234 3CNL GNP 0.000000004166 0.74789 17.2414
235 1MKY GDP 0.000000000116 0.57772 17.2414
236 4XTR ATP 0.00004616 0.47035 17.2414
237 4XVU ATP 0.00004658 0.4703 17.2414
238 4XTR ADP 0.00003734 0.45596 17.2414
239 1PUJ GNP 0.000000001212 0.59076 17.3653
240 2ZTS ADP 0.00108 0.44461 17.3653
241 5X40 ACP 0.001542 0.41013 17.3653
242 3QF7 ANP 0.0009438 0.40232 17.9641
243 3VMF GTP 0.00000000003649 0.72511 18.3908
244 3WXM GTP 0.00000000005389 0.71833 18.3908
245 3PCR GTP 0.0000000003732 0.70162 18.3908
246 1SVK ALF GDP 0.0000000004899 0.69161 18.3908
247 1BH2 GSP 0.0000000006585 0.63952 18.3908
248 1T5C ADP 0.000004652 0.62113 18.3908
249 1Y3A GDP 0.0000002003 0.58818 18.3908
250 2OM2 GDP 0.0000007488 0.57721 18.3908
251 5G41 AP5 0.006709 0.41552 18.3908
252 4HI0 GDP 0.0000008925 0.57391 19.1617
253 4P4T GDP 0.000004153 0.55122 19.1617
254 4BQS ADP 0.0001204 0.51517 19.1617
255 4BQS K2Q 0.005495 0.40995 19.1617
256 2W83 GTP 0.000000000113 0.72319 19.4805
257 4HSE ADP 0.00004486 0.5295 19.5402
258 2IS6 ADP 0.00006309 0.52904 19.5402
259 3FB4 AP5 0.005563 0.41412 19.5402
260 1T8U UAP SGN IDS SGN 0.007419 0.40881 19.5402
261 4PPF FLC 0.00001664 0.58814 19.7605
262 5L3V GDP 0.000005753 0.56507 19.7605
263 5L3S GNP 0.000009986 0.50148 19.7605
264 1IHU AF3 0.00003831 0.49822 19.7605
265 2ZR9 DTP 0.0002816 0.49694 19.7605
266 1IHU ADP 0.00005031 0.48843 19.7605
267 1H65 GDP 0.000006746 0.53019 20.3593
268 3Q9L ATP 0.00001607 0.53122 20.6897
269 3ZIA ATP 0.00006641 0.52128 20.6897
270 3ZIA ADP 0.0001503 0.49272 20.6897
271 4OI4 ATP 0.002053 0.42146 20.6897
272 4UOX PUT 0.009322 0.41003 20.6897
273 4LPS GDP 0.0000002207 0.64082 20.9581
274 3BER AMP 0.009892 0.42048 20.9581
275 3U6B GDP 0.0000000002129 0.81331 21.8391
276 2BVN GNP 0.00000000002383 0.80606 21.8391
277 4G5G GDP 0.0000000008315 0.77013 21.8391
278 3U6K GDP 0.000000001276 0.76095 21.8391
279 1KSH GDP 0.00000000001174 0.69873 21.8391
280 3CX8 GSP 0.0000000001611 0.66136 21.8391
281 4PC3 GDP 0.00000004417 0.65547 21.8391
282 4H1V GNP 0.000002418 0.56831 21.8391
283 2HCJ GDP 0.0000000001704 0.56038 21.8391
284 1D8T GDP 0.0000000005508 0.55977 21.8391
285 5JBQ GDP 0.0000000007228 0.55755 21.8391
286 4P3Y GDP 0.0000000002812 0.55594 21.8391
287 1SQ5 ADP 0.0001494 0.5043 21.8391
288 4QOS ADP 0.0006745 0.46756 21.8391
289 1B0U ATP 0.001564 0.44583 21.8391
290 1ION ADP 0.00006425 0.42741 21.8391
291 1G41 ADP 0.0001023 0.50617 22.1557
292 1CR1 TTP 0.0006792 0.41354 22.7545
293 2QN6 GDP 0.000000000357 0.80194 22.9885
294 4RD0 GDP 0.000000000007473 0.71749 22.9885
295 1XKV ATP 0.0003642 0.48017 22.9885
296 4Q1A UDP 0.01978 0.43462 22.9885
297 4Q1A 2XZ 0.01978 0.43462 22.9885
298 3DEF GDP 0.000001409 0.58617 23.9521
299 2WIC GNP 0.0000000425 0.67532 24.1379
300 5CK5 GDP 0.0000000008549 0.54912 24.1379
301 3W5J GDP 0.00000222 0.62971 25.1497
302 1K6M AGS 0.00218 0.42038 25.1497
303 1FQJ ALF 0.00000003079 0.72476 25.2874
304 1FQJ GDP 0.0000000365 0.6189 25.2874
305 2VB6 ADP BEF 0.00004296 0.47022 25.2874
306 4PFO ADP 0.000152 0.46024 25.2874
307 3DZD ADP 0.0008763 0.45743 25.7485
308 3EZ2 ADP 0.00005366 0.53971 26.4368
309 4M9Q GNP 0.00000000003695 0.75319 26.9461
310 2V7Q ADP 0.00004 0.53881 26.9461
311 2V7Q ATP 0.0001115 0.5044 26.9461
312 2CK3 ANP 0.000252 0.47251 26.9461
313 2CK3 ADP 0.0004414 0.44922 26.9461
314 1W0J ADP BEF 0.0002576 0.42391 26.9461
315 1W0J ADP 0.0001557 0.41939 26.9461
316 1DAR GDP 0.00000005033 0.68209 27.5449
317 4V0K GDP 0.0000005674 0.56326 27.5449
318 4LYA ATP 0.00003182 0.53669 27.5862
319 4B47 GDP 0.0000000001334 0.82359 28.1437
320 3KJI ADP 0.00003351 0.44779 28.1437
321 1KO8 6PG 0.0009179 0.403 28.7356
322 4ZKD GDP 0.00000000008878 0.71289 29.3413
323 3T12 GDP ALF 0.0000000005947 0.70204 29.3413
324 3T1O GDP 0.0000001093 0.52335 29.3413
325 1G7S GDP 0.000000005365 0.71867 29.9401
326 1ZD9 GDP 0.0000000002396 0.73834 31.7365
327 2QZ4 ADP 0.0000886 0.5091 32.1839
328 2C04 GCP 0.0001296 0.49035 32.1839
329 4DCT GDP 0.0000000001995 0.78762 32.3353
330 1NRJ GTP 0.000000001403 0.62737 32.3353
331 3AQ4 GDP 0.000000007478 0.71172 32.9341
332 2ODE ALF GDP 0.0000000004324 0.69106 33.3333
333 4YLG GDP 0.000000005332 0.58022 33.5329
334 1YZG GDP 0.000000006444 0.54672 33.5329
335 1ZJ6 G3D 0.00000000538 0.71862 34.1317
336 1FNN ADP 0.0003569 0.46584 35.6322
337 4A4Z ANP 0.007612 0.42612 35.6322
338 5KSP GDP 0.0000001176 0.654 37.7246
339 5KSZ GCP 0.0000001501 0.51753 37.7246
340 2ZEJ GDP 0.000001299 0.53329 38.9222
341 5KDO GDP 0.0000008542 0.57473 39.1892
342 2QTV GNP 0.000000001535 0.65195 39.521
343 5FG3 GDP 0.00000000009597 0.56826 39.521
344 1FZQ GDP 0.0000000008377 0.76997 40.7186
345 4ZI2 GNP 0.000000000009834 0.71394 40.7186
346 4GOJ GNP 0.00000000001152 0.71164 40.7186
347 1M2O GNP 0.000000001347 0.6624 40.7186
348 5DI3 GNP 0.0000000001505 0.72733 41.3174
349 1F6B GDP 0.00000006302 0.66707 41.3174
350 1J2J GTP 0.00000000005135 0.73742 43.7126
351 2J59 GTP 0.00000000007698 0.73011 43.7126
352 1O3Y GTP 0.0000000001465 0.7185 43.7126
353 3A1S GDP 0.00000008271 0.66138 43.7126
354 1MR3 G3D 0.000000003827 0.55452 43.7126
355 1S9D GDP 0.00000001531 0.69671 44.3114
356 1RE0 GDP 0.000000001398 0.54183 44.3114
357 1M7B GTP 0.000000000003638 0.80698 45.509
358 1GWN GTP 0.000000000003503 0.71823 45.509
359 3M1I GTP 0.00000000000002454 0.85604 48.503
360 3GJX GTP 0.00000000000002498 0.85571 48.503
361 3WYF GTP 0.0000000000000534 0.84625 48.503
362 3GJ4 GDP 0.00000000002857 0.84246 48.503
363 3GJ7 GDP 0.00000000002988 0.84149 48.503
364 3GJ8 GDP 0.00000000003198 0.82597 48.503
365 3GJ5 GDP 0.00000000003736 0.82272 48.503
366 3WYG GTP 0.0000000000000715 0.79751 48.503
367 1D5C GDP 0.000000000007087 0.81777 48.7654
368 5UWP GNP 0.000000000000009437 0.87669 49.1018
369 4HAT GNP 0.000000000000009548 0.87655 49.1018
370 5UWR GNP 0.000000000000008771 0.87412 49.1018
371 5UWI GNP 0.000000000000008882 0.87381 49.1018
372 5DHF GNP 0.000000000000009326 0.87304 49.1018
373 5UWU GNP 0.00000000000001021 0.87145 49.1018
374 5UWT GNP 0.00000000000001021 0.87129 49.1018
375 5DI9 GNP 0.00000000000001332 0.8707 49.1018
376 5UWS GNP 0.00000000000001354 0.87037 49.1018
377 5UWQ GNP 0.000000000000007994 0.85128 49.1018
378 5UWO GNP 0.000000000000008438 0.85034 49.1018
379 5UWW GNP 0.000000000000008771 0.84965 49.1018
380 5UWJ GNP 0.000000000000008771 0.84962 49.1018
381 5UWH GNP 0.00000000000001188 0.84462 49.1018
382 1Z0J GTP 0.00000000000002531 0.83199 49.1018
383 3CH5 GDP 0.00000000007676 0.80763 49.1018
384 1WA5 GTP 0.0000000000000332 0.76056 49.1018
385 3GJ3 GDP 0.00000000004105 0.59613 49.1018
386 1YVD GNP 0.0000000000000171 0.85833 49.1124
Pocket No.: 2; Query (leader) PDB : 1LFD; Ligand: GNP; Similar sites found: 8
This union binding pocket(no: 2) in the query (biounit: 1lfd.bio2) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2GMM MAN MAN 0.03331 0.40258 4.79042
2 3QXC ATP 0.003525 0.40022 5.74713
3 2ZL4 ALA ALA ALA ALA 0.03619 0.40167 6.12245
4 3LN9 FLC 0.04584 0.4074 6.89655
5 1P9B HDA 0.03753 0.40178 6.89655
6 2OQ5 BEN 0.02022 0.41404 9.1954
7 3MB5 SAM 0.004979 0.40245 11.7647
8 1P4V GLY 0.03066 0.40427 19.1617
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