Receptor
PDB id Resolution Class Description Source Keywords
1MGP 2 Å NON-ENZYME: BINDING HYPOTHETICAL PROTEIN TM841 FROM THERMOTOGA MARITIMA REVEALS FATTY ACID BINDING FUNCTION THERMOTOGA MARITIMA TWO DOMAIN STRUCTURE WITH MIXED ALPHA/BETA STRUCTURES IN BOTH DOMAINS STRUCTURAL GENOMICS BSGC STRUCTURE FUNDED BYNIH PROTEIN STRUCTURE INITIATIVE PSI BERKELEY STRUCTURALGENOMICS CENTER LIPID BINDING PROTEIN
Ref.: CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TM841 OF THERMOTOGA MARITIMA, REVEALS ITS FUNCTION AS FATTY ACID BINDING PROTEIN PROTEINS V. 50 526 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PLM A:314;
 Valid;
 none;
 submit data
256.424 C16 H32 O2 CCCCC...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1MGP 2 Å NON-ENZYME: BINDING HYPOTHETICAL PROTEIN TM841 FROM THERMOTOGA MARITIMA REVEALS FATTY ACID BINDING FUNCTION THERMOTOGA MARITIMA TWO DOMAIN STRUCTURE WITH MIXED ALPHA/BETA STRUCTURES IN BOTH DOMAINS STRUCTURAL GENOMICS BSGC STRUCTURE FUNDED BYNIH PROTEIN STRUCTURE INITIATIVE PSI BERKELEY STRUCTURALGENOMICS CENTER LIPID BINDING PROTEIN
Ref.: CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TM841 OF THERMOTOGA MARITIMA, REVEALS ITS FUNCTION AS FATTY ACID BINDING PROTEIN PROTEINS V. 50 526 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4X9X - OLA C18 H34 O2 CCCCCCCCC=....
2 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
3 3FYS - PLM C16 H32 O2 CCCCCCCCCC....
4 5WOO - MYR C14 H28 O2 CCCCCCCCCC....
5 6B9I - D0G C17 H34 O2 CC[C@H](C)....
6 6ALW - BNV C15 H30 O2 CC[C@H](C)....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: PLM; Similar ligands found: 64
No: Ligand ECFP6 Tc MDL keys Tc
1 PLM 1 1
2 STE 1 1
3 MYR 1 1
4 TDA 1 1
5 F23 1 1
6 DAO 1 1
7 X90 1 1
8 DCR 1 1
9 KNA 1 1
10 11A 1 1
11 EW8 1 1
12 F15 1 1
13 DKA 1 1
14 OCA 0.956522 1
15 SHV 0.833333 0.952381
16 KTC 0.793103 0.875
17 AZ1 0.73913 0.64
18 6NA 0.72 0.904762
19 ELA 0.71875 0.954545
20 NER 0.71875 0.954545
21 OLA 0.71875 0.954545
22 PAM 0.666667 0.954545
23 VCA 0.666667 0.954545
24 PML 0.625 0.6
25 3LA 0.606061 0.8
26 LEA 0.6 0.809524
27 MYZ 0.588235 0.909091
28 12H 0.586207 0.615385
29 ODD 0.567568 0.913043
30 BRC 0.566667 0.666667
31 14V 0.555556 0.740741
32 M12 0.545455 0.869565
33 14U 0.542857 0.703704
34 EOD 0.538462 0.7
35 EIC 0.538462 0.913043
36 BMJ 0.5 0.954545
37 BNV 0.5 0.954545
38 D0G 0.5 0.954545
39 BUA 0.48 0.666667
40 RCL 0.468085 0.84
41 FTT 0.459459 0.807692
42 56S 0.459459 0.653846
43 HXD 0.459459 0.807692
44 T4T 0.459459 0.8
45 ODT 0.452381 0.782609
46 3X1 0.444444 0.818182
47 LNL 0.44186 0.826087
48 9J6 0.441176 0.666667
49 OOA 0.441176 0.76
50 CUY 0.435897 0.68
51 CNS 0.435897 0.68
52 6UL 0.435897 0.68
53 5UF 0.432432 0.807692
54 243 0.428571 0.807692
55 EKG 0.418605 0.606061
56 GYM 0.418605 0.606061
57 1QW 0.418605 0.606061
58 OC9 0.413793 0.75
59 PL3 0.413793 0.75
60 F09 0.413793 0.75
61 DE1 0.413793 0.75
62 1DO 0.413793 0.75
63 O8N 0.413793 0.75
64 T25 0.403846 0.677419
Similar Ligands (3D)
Ligand no: 1; Ligand: PLM; Similar ligands found: 6
No: Ligand Similarity coefficient
1 16A 0.9171
2 O4B 0.9104
3 SP5 0.8963
4 EPA 0.8948
5 SSV 0.8891
6 ACA ACA 0.8666
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1MGP; Ligand: PLM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1mgp.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
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