Receptor
PDB id Resolution Class Description Source Keywords
1N2T 2 Å EC: 4.4.1.- C-DES MUTANT K223A WITH GLY COVALENTY LINKED TO THE PLP-COFA SYNECHOCYSTIS SP. PCC 6714 FES CLUSTER BIOSYNTHESIS NIFS PYRIDOXAL 5-prime -PHOSPHATE INACMUTANT LYASE
Ref.: SNAPSHOTS OF THE CYSTINE LYASE "C-DES" DURING CATAL STUDIES IN SOLUTION AND IN THE CRYSTALLINE STATE J.BIOL.CHEM. V. 278 357 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
K A:1001;
B:1002;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
39.098 K [K+]
PLP GLY A:3001;
B:2001;
 Valid;
Valid;
 none;
none;
 submit data
301.171 n/a P(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1ELU 1.55 Å EC: 4.4.1.- COMPLEX BETWEEN THE CYSTINE C-S LYASE C-DES AND ITS REACTION CYSTEINE PERSULFIDE. SYNECHOCYSTIS SP. FES CLUSTER BIOSYNTHESIS PYRIDOXAL 5-prime -PHOSPHATE THIOCYSTEIAMINOACRYLATE ENZYME-PRODUCT COMPLEX LYASE
Ref.: CRYSTAL STRUCTURE OF THE CYSTINE C-S LYASE FROM SYNECHOCYSTIS: STABILIZATION OF CYSTEINE PERSULFIDE CLUSTER BIOSYNTHESIS. PROC.NATL.ACAD.SCI.USA V. 97 3856 2000
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1N2T - PLP GLY n/a n/a
2 1ELU - PDA C11 H17 N2 O7 P Cc1c(c(c(c....
3 1N31 - PLP CYS n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1N2T - PLP GLY n/a n/a
2 1ELU - PDA C11 H17 N2 O7 P Cc1c(c(c(c....
3 1N31 - PLP CYS n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1N2T - PLP GLY n/a n/a
2 1ELU - PDA C11 H17 N2 O7 P Cc1c(c(c(c....
3 1N31 - PLP CYS n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: PLP GLY; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 PLP GLY 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: PLP GLY; Similar ligands found: 59
No: Ligand Similarity coefficient
1 GLY PLP 0.9999
2 PLG 0.9962
3 P1T 0.9811
4 PLI 0.9718
5 PDA 0.9700
6 0JO 0.9616
7 F0G 0.9613
8 PLP AOA 0.9523
9 IK2 0.9523
10 PP3 0.9505
11 PLP CYS 0.9478
12 PLS 0.9432
13 AN7 0.9411
14 4LM 0.9351
15 PLP SER 0.9340
16 EPC 0.9331
17 LCS 0.9311
18 SER PLP 0.9309
19 KOU 0.9307
20 C6P 0.9305
21 5PA 0.9267
22 DCS 0.9219
23 FOO 0.9209
24 IN5 0.9201
25 CKT 0.9122
26 PDD 0.9068
27 EVM 0.8989
28 PLP ALO 0.8928
29 OJQ 0.8915
30 HM5 0.8867
31 MPM 0.8843
32 PMH 0.8826
33 HM4 0.8813
34 PY5 0.8812
35 PLP PUT 0.8810
36 7XF 0.8805
37 2BK 0.8804
38 2BO 0.8785
39 96X 0.8770
40 695 0.8762
41 AHG 0.8739
42 3LM 0.8717
43 TLP 0.8714
44 MZC 0.8696
45 AFP 0.8685
46 L7N 0.8670
47 LF5 0.8663
48 MET PLP 0.8648
49 ILP 0.8642
50 7CU 0.8627
51 PLP MET 0.8622
52 PY6 0.8612
53 LJW 0.8612
54 AKB PLP 0.8585
55 PM9 0.8582
56 8HH 0.8538
57 PLP 2TL 0.8530
58 IRG 0.8529
59 6SC 0.8522
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1ELU; Ligand: CSS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1elu.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1ELU; Ligand: PDA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1elu.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1ELU; Ligand: PDA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1elu.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
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