Receptor
PDB id Resolution Class Description Source Keywords
1NF3 2.1 Å EC: 3.-.-.- STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING DOMAIN OF THE CELL POLARITY PROTEIN, PAR6 HOMO SAPIENS SEMI-CRIB MOTIF SWITCH I AND II PDZ DOMAIN GTPASE BINDING DOMAIN SIGNALING PROTEIN
Ref.: STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING DOMAIN OF THE CELL POLARITY PROTEIN, PAR6 EMBO J. V. 22 1125 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP A:200;
B:202;
Valid;
Valid;
none;
none;
Kd = 50 nM
522.196 C10 H17 N6 O13 P3 c1nc2...
MG A:201;
B:203;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1NF3 2.1 Å EC: 3.-.-.- STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING DOMAIN OF THE CELL POLARITY PROTEIN, PAR6 HOMO SAPIENS SEMI-CRIB MOTIF SWITCH I AND II PDZ DOMAIN GTPASE BINDING DOMAIN SIGNALING PROTEIN
Ref.: STRUCTURE OF CDC42 IN A COMPLEX WITH THE GTPASE-BINDING DOMAIN OF THE CELL POLARITY PROTEIN, PAR6 EMBO J. V. 22 1125 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 218 families.
1 1NF3 Kd = 50 nM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 176 families.
1 1NF3 Kd = 50 nM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 143 families.
1 1NF3 Kd = 50 nM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 GDP 0.839506 0.973684
3 GP3 0.82716 0.948718
4 GTP 0.809524 0.973684
5 GNH 0.807229 0.986842
6 G1R 0.77907 0.961039
7 GCP 0.77907 0.948718
8 GSP 0.770115 0.925
9 5GP 0.756098 0.960526
10 G 0.756098 0.960526
11 G2R 0.747253 0.936709
12 GMV 0.747126 0.948718
13 GAV 0.714286 0.936709
14 GP2 0.712644 0.936709
15 G2P 0.711111 0.936709
16 Y9Z 0.708333 0.880952
17 GDP MG 0.696629 0.9
18 GDD 0.690722 0.936709
19 GDC 0.690722 0.936709
20 GKE 0.690722 0.936709
21 GDP BEF 0.688889 0.878049
22 G5P 0.686869 0.948718
23 GPG 0.684211 0.936709
24 GTG 0.683673 0.91358
25 GFB 0.683673 0.936709
26 GDR 0.683673 0.936709
27 JB2 0.68 0.936709
28 GKD 0.68 0.936709
29 G3A 0.676768 0.948718
30 6CK 0.676768 0.91358
31 GDX 0.673267 0.948718
32 ALF 5GP 0.67033 0.86747
33 GTP MG 0.666667 0.9
34 BEF GDP 0.666667 0.86747
35 YGP 0.663265 0.879518
36 GCP G 0.659574 0.911392
37 GPD 0.656863 0.902439
38 GDP AF3 0.645833 0.86747
39 GDP ALF 0.645833 0.86747
40 JB3 0.641509 0.925
41 DBG 0.640351 0.974359
42 G3D 0.638298 0.960526
43 G4P 0.625 0.960526
44 GMP 0.621951 0.857143
45 NGD 0.62037 0.936709
46 GGM 0.618182 0.925926
47 0O2 0.616162 0.960526
48 G G 0.61 0.911392
49 2MD 0.603604 0.870588
50 CAG 0.60177 0.904762
51 U2G 0.590909 0.91358
52 FEG 0.590909 0.858824
53 GDP 7MG 0.590476 0.888889
54 MGD 0.587719 0.870588
55 ZGP 0.585586 0.848837
56 CG2 0.580357 0.91358
57 ANP 0.568421 0.922078
58 PGD 0.567797 0.902439
59 MD1 0.567797 0.870588
60 3GP 0.56044 0.922078
61 TPG 0.558333 0.822222
62 GH3 0.55 0.948052
63 FE9 0.546219 0.778947
64 GPX 0.539216 0.922078
65 G4M 0.539062 0.860465
66 DGI 0.536082 0.9
67 BGO 0.535088 0.901235
68 IDP 0.53125 0.947368
69 DGT 0.53 0.9
70 2GP 0.526882 0.935065
71 G1R G1R 0.520325 0.901235
72 I2C FE2 CMO CMO 0.516667 0.811111
73 U A G G 0.512605 0.911392
74 AGO 0.504202 0.91358
75 G A A A 0.504202 0.9
76 P2G 0.5 0.860759
77 G1G 0.5 0.902439
78 MGP 0.49505 0.936709
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 DGP 0.474227 0.8875
83 DG 0.474227 0.8875
84 G G U 0.473684 0.911392
85 IMP 0.463918 0.934211
86 G2Q 0.462963 0.936709
87 GPC 0.459677 0.858824
88 G C 0.459016 0.878049
89 GTA 0.448276 0.91358
90 G7M 0.444444 0.924051
91 MAP 0.439252 0.898734
92 G G G RPC 0.435484 0.853659
93 B4P 0.434343 0.871795
94 AP5 0.434343 0.871795
95 ADP 0.434343 0.896104
96 A2D 0.43299 0.871795
97 U G A 0.431655 0.86747
98 G G G C 0.426357 0.890244
99 SGP 0.425743 0.807229
100 AU1 0.425743 0.922078
101 BA3 0.424242 0.871795
102 35G 0.423077 0.909091
103 PCG 0.423077 0.909091
104 A G C C 0.423077 0.888889
105 C2E 0.423077 0.897436
106 APC G U 0.421875 0.864198
107 ATP 0.421569 0.896104
108 ACQ 0.419048 0.873418
109 5GP 5GP 0.419048 0.860759
110 AQP 0.417476 0.896104
111 5FA 0.417476 0.896104
112 01G 0.417391 0.880952
113 UNP 0.415842 0.810127
114 AN2 0.415842 0.909091
115 6AD 0.415094 0.821429
116 ITT 0.411765 0.846154
117 M33 0.411765 0.860759
118 G C C C 0.410448 0.901235
119 G U34 0.408 0.86747
120 ACP 0.407767 0.873418
121 APR 0.403846 0.871795
122 AR6 0.403846 0.871795
123 DG DG 0.403509 0.845238
124 A4P 0.403226 0.848837
125 UCG 0.402985 0.888889
126 AD9 0.4 0.873418
127 SAP 0.4 0.851852
128 AGS 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1NF3; Ligand: GNP; Similar sites found: 384
This union binding pocket(no: 1) in the query (biounit: 1nf3.bio3) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1R2Q GNP 0.0000000000148 0.76494 None
2 1TU3 GNP 0.00000000002558 0.73128 None
3 2XT3 ADP 0.000003188 0.62645 2.5641
4 2GWH A3P 0.006477 0.41369 3.07692
5 4YDS ATP 0.00002749 0.56251 3.125
6 2RGX AP5 0.006378 0.41362 3.125
7 1QAN SAH 0.004205 0.40851 3.125
8 3UIE ANP 0.00008452 0.41754 3.58974
9 4X17 SIA SIA 0.0235 0.40566 3.58974
10 3IO3 ADP 0.0000707 0.42547 3.90625
11 2C04 GCP 0.0006973 0.40837 3.90625
12 3FVQ ATP 0.0005037 0.41764 4.10256
13 3A4M ADP 0.00001948 0.4019 4.10256
14 5J6Y BGC 0.0134 0.42636 4.25532
15 5J6Y GLC 0.0134 0.42636 4.25532
16 4IDN GNP 0.00006514 0.48844 4.61538
17 3DZD ADP 0.0006686 0.46285 4.61538
18 3ZFD ANP 0.0000002174 0.50622 4.6875
19 5BQ5 ADP BEF 0.000289 0.48491 4.6875
20 3DC4 ADP 0.000002242 0.43462 4.6875
21 4U60 SIA GAL NGA 0.007635 0.43265 4.6875
22 4U60 SIA 0.009345 0.42789 4.6875
23 1D2N ANP 0.003821 0.41683 4.6875
24 1IN4 ADP 0.0008885 0.40374 4.6875
25 4D81 ADP 0.0004012 0.40347 4.6875
26 4BQS K2Q 0.007518 0.40425 5.11364
27 4BQS ADP 0.007518 0.40425 5.11364
28 2FH5 GTP 0.0000000006845 0.70862 5.12821
29 4NON GDP 0.0000001506 0.5854 5.12821
30 2OBM ADP 0.0004264 0.50867 5.12821
31 1YTM ATP 0.0005073 0.45478 5.12821
32 1F9V ADP 0.000005818 0.40978 5.12821
33 5EE5 GTP 0.0000000002331 0.66506 5.26316
34 2CBZ ATP 0.000001896 0.64831 5.46875
35 3A1S GDP 0.00000008526 0.51486 5.46875
36 3CNL GNP 0.0000003498 0.47516 5.46875
37 4OHY ANP 0.00008868 0.47381 5.46875
38 1IHU AF3 0.0003329 0.45841 5.46875
39 1IHU ADP 0.000413 0.45043 5.46875
40 5L3V GDP 0.00007104 0.4233 5.46875
41 1M7G ADX 0.002193 0.4214 5.46875
42 1M7G ADP 0.002103 0.41927 5.46875
43 1HTW ADP 0.00008038 0.41379 5.46875
44 2WIC GNP 0.01206 0.41022 5.46875
45 1M7G AV2 0.0000314 0.40669 5.46875
46 5H56 TYD 0.005792 0.40274 5.46875
47 5H56 ADP 0.005792 0.40274 5.46875
48 1T5C ADP 0.000001318 0.40058 5.46875
49 4WZ6 ATP 0.0000547 0.55378 5.64103
50 1OS1 ATP 0.004725 0.40496 5.64103
51 1OS1 PYR 0.00511 0.40496 5.64103
52 3COB ADP 0.000003425 0.40454 5.64103
53 4OI4 ATP 0.0005304 0.42847 6.08696
54 4IEE AGS 0.00171 0.46355 6.15385
55 2JLR ANP 0.0004605 0.40219 6.15385
56 3B5J 12D 0.00006032 0.54477 6.25
57 4J0Q GDP 0.00000005921 0.49653 6.25
58 1IWE IMP 0.00185 0.47023 6.25
59 5IRN ADP 0.0001718 0.41485 6.25
60 2KIN ADP 0.0000005314 0.40859 6.25
61 1I1N SAH 0.004142 0.40729 6.25
62 1UH4 GLC 0.02647 0.40524 6.25
63 1BG2 ADP 0.0000009089 0.40449 6.25
64 5HCN GCP 0.0000000684 0.51728 6.66667
65 1DAR GDP 0.0000002756 0.49206 6.66667
66 5FHD ADP ALF 0.0001407 0.47886 6.66667
67 5FTB ANP 0.0004036 0.47807 6.66667
68 3T34 GDP 0.0001056 0.47504 6.66667
69 1NJF AGS 0.001544 0.40629 6.66667
70 1NJF ADP 0.0009388 0.4029 6.66667
71 5GOE GDP 0.0000005986 0.61138 7.03125
72 1KK8 BEF ADP 0.00001386 0.53412 7.03125
73 3EZ2 ADP 0.00009442 0.52728 7.03125
74 1B7T ADP 0.0000725 0.51321 7.03125
75 4R43 GDP 0.0002441 0.5 7.03125
76 4R98 GNH 0.0000009025 0.47687 7.03125
77 4XGU ADP 0.0004801 0.4647 7.03125
78 4HSE ADP 0.00004532 0.42142 7.03125
79 4MKF AP5 0.004915 0.41744 7.03125
80 2IYL GDP 0.00009711 0.41104 7.03125
81 4V03 ADP 0.0001822 0.40934 7.03125
82 2C78 GNP 0.0000000009588 0.64032 7.17949
83 2C77 GNP 0.0000000008704 0.63242 7.17949
84 1X6V ADP 0.002513 0.41613 7.17949
85 5LKC FUC GLA A2G 0.04126 0.40588 7.17949
86 1G7C 5GP 0.000003784 0.58941 7.44681
87 5I0H ADP BEF 0.000001759 0.51003 7.69231
88 2FNA ADP 0.0006083 0.4208 7.69231
89 4RD0 GDP 0.0000000002957 0.65932 7.8125
90 1D2E GDP 0.0000001454 0.63163 7.8125
91 1JJ7 ADP 0.000003891 0.63156 7.8125
92 4PPF FLC 0.000008732 0.60369 7.8125
93 2ZFI ADP 0.00001222 0.43548 7.8125
94 4E03 ADP 0.00004417 0.42658 7.8125
95 4H1V GNP 0.00001538 0.46361 8.20513
96 2QZ4 ADP 0.0002183 0.40748 8.20513
97 3IIJ ADP 0.00005931 0.40619 8.33333
98 1G7S GDP 0.0000002626 0.63718 8.59375
99 3W5J GDP 0.00001053 0.59597 8.59375
100 3T1O GDP 0.000001624 0.48558 8.59375
101 3ZS9 ADP ALF 0.00005988 0.47839 8.59375
102 2WOJ ADP ALF 0.00006066 0.46898 8.59375
103 4QOS ADP 0.0006516 0.46826 8.59375
104 1L2T ATP 0.001352 0.41728 8.59375
105 1FP6 ADP 0.0001595 0.41674 8.59375
106 1SVM ATP 0.01391 0.40353 8.59375
107 2DPY ADP 0.0001922 0.5186 8.71795
108 2VB6 ADP BEF 0.00004567 0.46903 9.23077
109 4PFO ADP 0.0002386 0.4524 9.23077
110 1OYY AGS 0.003098 0.44546 9.375
111 3RLF ANP 0.0007015 0.42347 9.375
112 1P72 ADP 0.004113 0.4115 9.375
113 5HJQ I3P 0.03808 0.40986 9.375
114 2WJG GDP 0.00000006738 0.50803 9.57447
115 2BIF ANP 0.001747 0.42818 9.74359
116 2BIF SIN 0.003109 0.42797 9.74359
117 2CK3 ADP 0.0008652 0.42045 9.74359
118 1W0J ADP 0.0001401 0.42001 9.74359
119 1W0J ADP BEF 0.0004348 0.41607 9.74359
120 2CK3 ANP 0.0004546 0.41565 9.74359
121 4XVU ATP 0.0001742 0.44784 10
122 4XTR ATP 0.0001814 0.44708 10
123 4XTR ADP 0.0001212 0.43665 10
124 2X77 GDP 0.00000002515 0.68631 10.0529
125 1BH2 GSP 0.000000005636 0.64574 10.1562
126 2ODE ALF GDP 0.000000009257 0.63698 10.1562
127 1SVK ALF GDP 0.0000000107 0.63692 10.1562
128 3LRE ADP 0.000004428 0.6225 10.1562
129 2OM2 GDP 0.000009514 0.52946 10.1562
130 1Y3A GDP 0.000001694 0.52712 10.1562
131 3ZQ6 ADP ALF 0.0001928 0.45796 10.1562
132 5VGR GDP 0.0009161 0.45204 10.1562
133 4WOP CTP 0.00006951 0.45011 10.1562
134 2ZJ5 ADP 0.009573 0.43277 10.1562
135 4NU0 AP5 0.002875 0.42406 10.1562
136 3CV2 OXL 0.04086 0.40408 10.1562
137 3U6B GDP 0.0000000165 0.71762 10.2564
138 2BVN GNP 0.000000001394 0.59257 10.2564
139 2HCJ GDP 0.000000009451 0.5156 10.2564
140 3U6K GDP 0.0000000362 0.51167 10.2564
141 1F5N GNP 0.000009053 0.5114 10.2564
142 4G5G GDP 0.00000003736 0.51089 10.2564
143 5JBQ GDP 0.00000004067 0.51013 10.2564
144 1D8T GDP 0.0000000452 0.50893 10.2564
145 4PC3 GDP 0.000001251 0.49317 10.2564
146 1NRJ GTP 0.00000003805 0.57718 10.5505
147 4LPS GDP 0.0000004782 0.48766 10.7692
148 2WJH GDP 0.00000005478 0.52379 10.8434
149 2WJH FLC 0.000008003 0.45805 10.8434
150 2BEK ATP 0.002226 0.42874 10.8949
151 1KK1 GNP 0.0000001644 0.48853 10.9375
152 5CK5 GDP 0.0000001678 0.48678 10.9375
153 2Q2Y ADP 0.001241 0.44176 10.9375
154 2Q2Y MKR 0.001205 0.44113 10.9375
155 3BFX A3P 0.006014 0.41164 10.9375
156 2Y65 ADP 0.000003495 0.40431 10.9375
157 3FWY ADP 0.0001778 0.42347 11.7188
158 3H4S ADP 0.000002375 0.40727 11.7188
159 4FRZ ADP 0.000009432 0.40489 11.7188
160 3PCR GTP 0.00000001268 0.60944 11.7284
161 1TQ4 GDP 0.0000006475 0.52601 11.7949
162 4ZG4 VO4 ADP 0.000002511 0.51817 11.7949
163 2QN6 GDP 0.000000008796 0.73145 11.828
164 2XTZ GSP 0.000000001091 0.66606 12.3077
165 2F5X ASP 0.03855 0.40099 12.3077
166 4ZKD GDP 0.000000002706 0.65319 12.5
167 1V8K ANP 0.0000008556 0.62131 12.5
168 5XDR ADP 0.0007744 0.46982 12.5
169 1ZUI SKM 0.0008176 0.44451 12.5
170 2OFW ADX 0.003781 0.42016 12.5
171 2PEZ DAT 0.003775 0.41303 12.5
172 2PEZ GGZ 0.003775 0.41303 12.5
173 1GOJ ADP 0.000001076 0.40321 12.5
174 4DCT GDP 0.000000007781 0.71089 12.8205
175 5IRR GSP 0.00000006141 0.61668 12.8205
176 3T12 GDP ALF 0.00000002014 0.59443 13.2353
177 1G3Q ADP 0.0003302 0.48768 13.2812
178 2ZPA ADP 0.0008483 0.40468 13.2812
179 1ION ADP 0.0003476 0.40055 13.2812
180 3BFV ADP 0.0001948 0.50485 13.2841
181 1Z6T ADP 0.0002088 0.41817 13.3333
182 5KDO GDP 0.000008145 0.53238 13.5135
183 2V7Q ATP 0.00008685 0.41914 13.6364
184 2V7Q ADP 0.0000937 0.40761 13.6364
185 4LYA ATP 0.00002197 0.54445 13.8462
186 2HF9 GSP 0.00001834 0.49699 13.8462
187 1JG3 ADN 0.006187 0.40156 13.8462
188 1FQJ GDP 0.0000004475 0.54934 14.2857
189 1FQJ ALF 0.000000147 0.4682 14.2857
190 2FAH GDP 0.0002551 0.41479 14.359
191 1WDT GTP 0.00000004254 0.56086 14.8438
192 5K5Z ANP 0.0002778 0.44524 14.8438
193 5FG3 GDP 0.000000007022 0.51801 14.8718
194 1H65 GDP 0.00002939 0.50309 14.8718
195 5N69 ADP 0.00001809 0.44871 14.8718
196 4B47 GDP 0.0000000255 0.70804 15.3846
197 1PUJ GNP 0.00000001334 0.5569 15.3846
198 1YRB GDP 0.00000004464 0.53884 15.3846
199 2RCN GDP 0.000000006553 0.53283 15.3846
200 1SKQ GDP 0.0000001152 0.4894 15.3846
201 1FNN ADP 0.0002212 0.42707 15.3846
202 4RZ3 ADP 0.00113 0.40037 15.3846
203 1CS4 GSP 0.000000004128 0.62157 15.625
204 1AZT GSP 0.00000000298 0.61621 15.625
205 5L3R GCP 0.00004591 0.48547 15.625
206 4HI0 GDP 0.00002948 0.46863 15.625
207 3E70 GDP 0.00008108 0.41614 15.625
208 4WEI GLC GAL 0.01894 0.41612 15.625
209 5X40 ACP 0.001299 0.41288 15.625
210 5HR5 ADP 0.0005839 0.40312 15.625
211 3DEF GDP 0.00001596 0.45441 15.8974
212 1ZD9 GDP 0.00000005391 0.56091 15.9574
213 1JI0 ATP 0.0000588 0.54535 16.4062
214 1SQ5 ADP 0.0001085 0.51099 16.4062
215 3TK1 GDP 0.00000007141 0.48358 16.4062
216 1ZIN AP5 0.004414 0.41839 16.4062
217 3CX8 GSP 0.00000000333 0.65503 16.4103
218 3AB3 GDP 0.0000004265 0.53657 16.4103
219 1ZCB GDP 0.000002066 0.53493 16.4103
220 5M04 GDP 0.0000002293 0.48295 16.4103
221 4Q1A UDP 0.01321 0.4433 16.4103
222 4Q1A 2XZ 0.01321 0.4433 16.4103
223 3ZIA ADP 0.000182 0.41567 16.4103
224 3ZIA ATP 0.00007864 0.41506 16.4103
225 1S3G AP5 0.005846 0.41321 16.4103
226 3QKT ANP 0.001834 0.41218 16.9231
227 4P3Y GDP 0.00000003021 0.50447 17.033
228 5L3S GNP 0.000116 0.45951 17.1875
229 5L3W GDP 0.0001213 0.41771 17.1875
230 3PQC GDP 0.00000002575 0.53601 17.4359
231 4MKG AP5 0.00471 0.41719 17.4359
232 2CHG ANP 0.0007184 0.40672 17.4359
233 3AQ4 GDP 0.000000491 0.49265 17.9348
234 1MKY GDP 0.000000007049 0.52931 17.9487
235 4WZA ADP 0.000175 0.49651 17.9487
236 4WZA ACP 0.000175 0.49651 17.9487
237 4YS0 ADP 0.001971 0.43703 17.9487
238 4CVN ADP 0.00002266 0.56687 17.9688
239 5J1J ANP 0.000346 0.43574 17.9688
240 1MR3 G3D 0.0000005607 0.48916 18.232
241 4M9Q GNP 0.000000002105 0.67877 18.4615
242 3WY9 GDP 0.000000007892 0.73384 18.75
243 3DOE GTP 0.000000002726 0.66573 18.75
244 3WYA GDP 0.00000001966 0.51755 18.75
245 5G41 AP5 0.008174 0.41181 18.75
246 1W5T ANP 0.00127 0.40536 18.75
247 4BAS GNP 0.00000004088 0.58082 19.4872
248 3RC3 ANP 0.009438 0.42589 19.5312
249 5DI3 GNP 0.00000001024 0.64965 20
250 3QF7 ANP 0.00185 0.42443 20
251 2VVG ADP 0.000001037 0.40431 20
252 3Q9L ATP 0.0002019 0.48167 20.3125
253 3FB4 AP5 0.005593 0.41402 20.3125
254 5TSH ANP 0.00008039 0.40372 20.3125
255 1LOB MMA 0.03818 0.4007 21.1538
256 1ZJ6 G3D 0.0000002118 0.64168 21.5385
257 1F2U ATP 0.002722 0.41168 22.2973
258 3WXM GTP 0.000000003368 0.64648 22.6562
259 3VMF GTP 0.000000005392 0.6383 22.6562
260 1KSH GDP 0.0000000009227 0.6324 23.6559
261 5KSZ GCP 0.00000003039 0.5366 24.1026
262 2PL3 ADP 0.0006328 0.48543 24.2188
263 5KSP GDP 0.00000002582 0.52516 24.7368
264 5KUT GDP 0.00000002856 0.52318 24.8677
265 4A4Z ANP 0.006778 0.42862 25
266 3H86 AP5 0.003779 0.41554 25
267 1S9D GDP 0.000001128 0.60665 26.2195
268 1RE0 GDP 0.0000001435 0.48919 26.2195
269 1UPT GTP 0.0000000007303 0.64607 26.6667
270 1J2J GTP 0.0000000001939 0.71344 27.1084
271 2J59 GTP 0.0000000005765 0.65965 27.1084
272 1O3Y GTP 0.000000001541 0.64397 27.1084
273 4NCN GTP 0.0000000002634 0.67119 27.1795
274 4TMZ GSP 0.0000000003165 0.66805 27.1795
275 4YLG GDP 0.0000003159 0.52211 27.7457
276 4V0K GDP 0.000008646 0.51503 28.9941
277 3Q72 GNP 0.000000001819 0.5353 29.5181
278 2F9L GDP 0.00000001798 0.63168 31.7949
279 1M2O GNP 0.000000004731 0.64057 32.1053
280 1R4A GNP 0.000000008899 0.62213 33.3333
281 3GJ7 GDP 0.000000006528 0.72592 33.8462
282 3GJ8 GDP 0.000000006384 0.54898 33.8462
283 3GJ5 GDP 0.000000007513 0.54606 33.8462
284 3GJ4 GDP 0.000000006222 0.53529 33.8462
285 1F6B GDP 0.000002554 0.47569 33.8462
286 3E5H GNP 0.0001002 0.50263 34.2697
287 5DIF GNP 0.0000000000003909 0.80768 34.359
288 5UWI GNP 0.0000000000005308 0.80233 34.359
289 5UWP GNP 0.000000000000658 0.80214 34.359
290 5DI9 GNP 0.0000000000007245 0.80045 34.359
291 5DHF GNP 0.0000000000005969 0.80028 34.359
292 5UWT GNP 0.0000000000006396 0.79907 34.359
293 4HAT GNP 0.0000000000008485 0.79767 34.359
294 5UWS GNP 0.0000000000008601 0.79743 34.359
295 5UWR GNP 0.0000000000007049 0.79738 34.359
296 5UWQ GNP 0.0000000000006037 0.77913 34.359
297 5UWO GNP 0.0000000000006216 0.77862 34.359
298 5UWW GNP 0.0000000000006247 0.77851 34.359
299 5UWJ GNP 0.0000000000006447 0.77798 34.359
300 1VG8 GNP 0.000000000002392 0.77603 34.359
301 5UWH GNP 0.0000000000007956 0.77452 34.359
302 1VG0 GDP 0.000000004403 0.57421 34.359
303 3GJ3 GDP 0.00000001035 0.52948 34.359
304 3CH5 GDP 0.01616 0.41553 34.359
305 4LX0 BEF GDP 0.000000000001366 0.78582 34.4633
306 4ZI2 GNP 0.0000000008729 0.64329 34.7368
307 2A5F GTP 0.000000003551 0.63776 34.8571
308 3GJX GTP 0.000000000001082 0.78989 34.8718
309 4GOJ GNP 0.000000000835 0.64456 34.9206
310 4C4P GNP 0.0000000001319 0.70597 35.2601
311 3M1I GTP 0.0000000000006858 0.79786 35.3846
312 3WYF GTP 0.000000000001489 0.7878 35.3846
313 1YZG GDP 0.0000003815 0.49585 35.7542
314 4KAX GTP 0.000000001149 0.64026 36.0947
315 1VG1 GDP 0.000000001289 0.56687 36.2162
316 1VG9 GDP 0.000000001956 0.56179 36.2162
317 2W83 GTP 0.000000001574 0.64353 36.3636
318 3N5C GDP 0.0000002289 0.49483 36.4198
319 1FZQ GDP 0.00000007248 0.50669 36.4641
320 1Z06 GNP 0.00000000002106 0.7243 36.5079
321 2QTV GNP 0.00000001018 0.61944 36.5269
322 5JCZ GDP 0.000000002193 0.6959 36.8715
323 3WYG GTP 0.000000000003156 0.73675 37.9121
324 2ZEJ GDP 0.00001979 0.49773 38.0435
325 1WA5 GTP 0.000000000001293 0.708 38.0682
326 1KAO GDP 0.000000007522 0.57947 39.521
327 2CJW GDP 0.000000009212 0.71853 39.5833
328 2A5J GDP 0.0000000007181 0.74903 39.7906
329 1Z2A GDP 0.00000001764 0.63203 39.881
330 5UWU GNP 0.0000000000006241 0.79951 40
331 3BC1 GNP 0.00000000004875 0.72008 40
332 1OIV GDP 0.00000002296 0.61312 40.3141
333 3CPJ GDP 0.000000002145 0.58475 40.5128
334 1OIX GDP 0.00000000001602 0.73941 40.8377
335 3TKL GTP 0.0000000000008712 0.77836 41.5385
336 2HT6 GDP 0.000000005096 0.52617 42.5287
337 5SZH GNP 0.000000000001616 0.78288 42.5641
338 2EW1 GNP 0.000000000009373 0.72691 42.5641
339 2A9K GDP 0.00000000403 0.58521 42.7808
340 1Z0A GDP 0.000000001653 0.5751 43.1034
341 3Q85 GNP 0.000000004904 0.53581 43.1953
342 2BME GNP 0.000000000005589 0.75771 43.5484
343 5UQW GDP 0.000000002059 0.64637 43.9153
344 3MJH GTP 0.000000000002769 0.76992 44.0476
345 1Z0K GTP 0.000000000006794 0.77393 44.186
346 3SFV GDP 0.000000003096 0.61 44.1989
347 1X1R GDP 0.000000002208 0.64094 44.382
348 4DSU GDP 0.0000000002924 0.69206 44.4444
349 2BCG GDP 0.000000006018 0.67654 44.6154
350 5TAR GDP 0.000000006415 0.69408 45.4054
351 3RWO GDP 0.00000001027 0.6271 45.4054
352 5TB5 GDP 0.000000002955 0.56537 45.4054
353 1UAD GNP 0.0000000000002544 0.81141 45.7143
354 2EFE GNH 0.00000003 0.54929 45.8564
355 4DKX GDP 0.0000000002097 0.79968 46.1538
356 1ZC3 GNP 0.000000000005432 0.7617 46.2857
357 3T5G GDP 0.000000002412 0.56947 46.4088
358 1D5C GDP 0.000000006382 0.58025 46.9136
359 1Z0F GDP 0.000000002352 0.55816 46.9274
360 4KVG GTP 0.0000000000006065 0.7963 47.0238
361 1YZN GNP 0.000000000000315 0.78993 47.027
362 3X1Z GNP 0.0000000000001861 0.82432 47.3054
363 4HDO GNP 0.00000000000007683 0.81313 47.3054
364 1GUA GNP 0.000000000000241 0.79428 47.3054
365 4HDQ GNP 0.000000000002416 0.77586 47.3054
366 1YVD GNP 0.00000000001301 0.74303 47.3373
367 2C5L GTP 0.0000000000002383 0.79422 47.3988
368 3NKV GNP 0.000000000002968 0.76871 47.4286
369 1Z0J GTP 0.000000000007667 0.75568 47.6471
370 1EK0 GNP 0.00000000001544 0.74006 47.6471
371 1G16 GDP 0.00000001811 0.59197 47.6471
372 5WDR GNP 0.00000000000008471 0.83439 47.9532
373 1XTQ GDP 0.0000000005983 0.65861 48.0226
374 2Y8E GNP 0.000000000007615 0.75234 48.0447
375 5XCO GDP 0.00000000346 0.5753 48.538
376 4D0G GTP 0.000000001348 0.63578 48.5714
377 3TNF GNP 0.000000000001819 0.78428 48.8506
378 3QBT GNP 0.000000000002691 0.77041 48.8506
379 4LHW GNP 0.000000000008586 0.75025 48.8506
380 5O2T GSP 0.0000000000005509 0.78039 49.1124
381 2UZI GTP 0.000000000001766 0.77773 49.3976
382 1CLU DBG 0.00000001215 0.65755 49.3976
383 5E95 GDP 0.000000009332 0.67712 49.4048
384 1U8Z GDP 0.000000001585 0.64132 49.4048
385 3DDC GNP 0.0000000000002706 0.81411 50
386 3KUD GDP 0.00000000007368 0.67009 50
387 5UFQ GNP 0.000000001168 0.66488 50
Pocket No.: 2; Query (leader) PDB : 1NF3; Ligand: GNP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1nf3.bio3) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1NF3; Ligand: GNP; Similar sites found: 62
This union binding pocket(no: 3) in the query (biounit: 1nf3.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2CB8 MYA 0.03166 0.40558 None
2 1SQL GUN 0.02354 0.41184 2.05479
3 2VOH CIT 0.006483 0.4212 2.34375
4 2YMZ LAT 0.02495 0.40602 3.07692
5 1LOJ URI 0.01751 0.41249 3.44828
6 3FKQ ATP 0.0000711 0.5021 3.58974
7 4GOX A3P 0.004957 0.40553 4.61538
8 2W58 ADP 0.000001842 0.65099 4.6875
9 2ZTS ADP 0.002492 0.42856 4.6875
10 4P32 ADP 0.001549 0.40483 4.6875
11 1NN5 ANP 0.005804 0.40403 4.6875
12 2NSJ C2R 0.01936 0.40221 4.6875
13 2AWN ADP 0.000001058 0.6717 5.46875
14 4QRH 0O2 0.0007856 0.41 5.46875
15 4UOX PUT 0.01078 0.4071 5.46875
16 2WHX ADP 0.00004492 0.55819 6.15385
17 1G8S MET 0.02036 0.41505 6.25
18 1UH4 GLC GLC GLC GLC GLC GLC 0.03653 0.41038 6.25
19 1W7J ADP BEF 0.000007333 0.54658 7.03125
20 1G6H ADP 0.000008631 0.61229 7.17949
21 2ZR9 DTP 0.0002232 0.50193 7.8125
22 1XP8 AGS 0.0005201 0.48975 7.8125
23 3R7F CP 0.008963 0.43481 7.8125
24 1MVQ MMA 0.02456 0.40081 7.8125
25 1NHX FTB 0.00469 0.42128 8.59375
26 1NHX PEP 0.004679 0.42036 8.59375
27 5H68 AGS 0.0004795 0.41041 8.59375
28 1UJ2 C5P 0.004294 0.4037 8.59375
29 2CE7 ADP 0.0002846 0.40184 8.59375
30 1GXU 2HP 0.0005193 0.48616 8.79121
31 2GMP NAG MAN 0.03142 0.40705 9.23077
32 5GJC ATP 0.0000955 0.40149 9.23077
33 2OZE AGS 0.0002297 0.42598 9.375
34 3B7G ANP 0.0007496 0.47051 9.74359
35 1BO4 COA 0.01603 0.41005 10.119
36 1XKV ATP 0.0003497 0.40269 10.2564
37 3BP1 GUN 0.01 0.43934 10.7692
38 1G41 ADP 0.0004864 0.47425 10.9375
39 1VHT BA3 0.002593 0.43998 10.9375
40 3BER AMP 0.01484 0.41172 11.245
41 2GK6 ADP 0.002847 0.45772 11.2821
42 3TY3 GGG 0.02001 0.41132 11.7188
43 1T8U UAP SGN IDS SGN 0.004045 0.42 12.3077
44 2H88 TEO 0.02628 0.40318 12.5
45 5DG2 GAL GLC 0.01664 0.42301 12.5926
46 3KTA AP5 0.001131 0.45233 13.1868
47 1CR1 TTP 0.0008473 0.40991 13.8462
48 1P9B GDP 0.004352 0.4215 14.8718
49 1B0U ATP 0.002135 0.43959 14.8855
50 4G86 BNT 0.01563 0.4325 15.3846
51 1K6M AGS 0.00228 0.41957 15.625
52 4P4T GDP 0.00001374 0.52828 16.4062
53 3NHB ADP 0.00004571 0.55792 17.1875
54 2J5V PCA 0.04274 0.40856 17.4359
55 1W5T ADP 0.001758 0.43927 18.75
56 2NCD ADP 0.00001456 0.58354 19.5312
57 2X7I CIT 0.008619 0.42345 19.5312
58 1DNP MHF 0.0198 0.40599 20.3125
59 3B9Q MLI 0.0003423 0.51026 21.0938
60 1Y63 ADP 0.0001656 0.50834 21.1957
61 2C9O ADP 0.001767 0.43133 27.6923
62 2OG2 MLI 0.0001047 0.53709 33.5938
Pocket No.: 4; Query (leader) PDB : 1NF3; Ligand: GNP; Similar sites found: 24
This union binding pocket(no: 4) in the query (biounit: 1nf3.bio2) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4PU6 ASP 0.0217 0.41019 3.90625
2 2JBH 5GP 0.02733 0.40086 4.6875
3 4IOK ADP 0.004793 0.40616 5.46875
4 4IOK XPO 0.004205 0.40382 5.46875
5 5M7P ADP 0.001641 0.4021 6.15385
6 3KJI ADP 0.0006704 0.40762 7.8125
7 3P4X ADP 0.00008826 0.40572 7.8125
8 3W6G FLC 0.03811 0.40004 7.8125
9 1PTR PRB 0.02873 0.40813 8
10 5MVR ADP 0.000113 0.40735 8.59375
11 1UJ2 ADP 0.004585 0.40546 8.59375
12 3MB5 SAM 0.004672 0.40196 8.71795
13 2UVO NDG 0.04656 0.40414 8.77193
14 1DL5 SAH 0.004908 0.40574 9.375
15 3BOS CDP 0.0001405 0.40176 11.157
16 1XMV ADP 0.000191 0.40502 11.7188
17 1OFH ADP 0.0005094 0.40158 12.069
18 4QM7 GTP 0.0001232 0.40451 12.2807
19 1R18 SAH 0.004291 0.40652 12.3077
20 1FNZ A2G 0.02582 0.40543 13.2812
21 4ZNL BEF ADP 0.0002831 0.40066 13.2812
22 1QF5 RPL 0.0492 0.40742 15.625
23 5LTJ ADP 0.0001964 0.40525 19.5312
24 1LVG ADP 0.00003116 0.40529 28.125
Feedback