Receptor
PDB id Resolution Class Description Source Keywords
1O23 2.32 Å EC: 2.4.1.22 CRYSTAL STRUCTURE OF LACTOSE SYNTHASE IN THE PRESENCE OF UDP MUS MUSCULUS ALPHA-LACTALBUMIN; BETA14-GALACTOSYLTRANSFERASE; UDP-GLUCOTRANSFERASE ACTIVATOR-TRANSFERASE COMPLEX
Ref.: ALPHA-LACTALBUMIN (LA) STIMULATES MILK BETA-1,4-GALACTOSYLTRANSFERASE I (BETA 4GAL-T1) TO GLUCOSE FROM UDP-GLUCOSE TO N-ACETYLGLUCOSAMINE. CR STRUCTURE OF BETA 4GAL-T1 X LA COMPLEX WITH UDP-GLC J.BIOL.CHEM. V. 276 37665 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:805;
C:806;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
GUD B:809;
D:810;
Valid;
Valid;
none;
none;
submit data
566.302 C15 H24 N2 O17 P2 C1=CN...
MES A:815;
Invalid;
none;
submit data
195.237 C6 H13 N O4 S C1COC...
MN B:807;
D:808;
Part of Protein;
Part of Protein;
none;
none;
submit data
54.938 Mn [Mn+2...
PG4 A:813;
C:814;
Invalid;
Invalid;
none;
none;
submit data
194.226 C8 H18 O5 C(COC...
UDP B:811;
D:812;
Valid;
Valid;
none;
none;
submit data
404.161 C9 H14 N2 O12 P2 C1=CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YRO 1.9 Å EC: 2.4.1.22 CRYSTAL STRUCTURE OF BETA14,-GALACTOSYLTRANSFERASE MUTANT ARG228LYS IN COMPLEX WITH ALPHA-LACTALBUMIN IN THE P RESENCE OF UDP-GALACTOSE AND MN MUS MUSCULUS ARG228LYS MUTATION; UDP-GAL COMPLEX TRANSFERASE ACTIVATOR/TRANSFERASE COMPLEX
Ref.: MUTATION OF ARGININE 228 TO LYSINE ENHANCES THE GLUCOSYLTRANSFERASE ACTIVITY OF BOVINE BETA-1,4-GALACTOSYLTRANSFERASE I BIOCHEMISTRY V. 44 3202 2005
Members (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1NHE - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1YRO - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
3 1NF5 - BGC C6 H12 O6 C([C@@H]1[....
4 1O23 - GUD C15 H24 N2 O17 P2 C1=CN(C(=O....
5 2FYC - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
6 1PZY - NAG C8 H15 N O6 CC(=O)N[C@....
7 1NMM - NAG C8 H15 N O6 CC(=O)N[C@....
8 1NWG - BGN C10 H19 N O6 CCCC(=O)N[....
9 2FYD - NGA C8 H15 N O6 CC(=O)N[C@....
10 1NKH - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 1OQM - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
12 1NQI - NAG C8 H15 N O6 CC(=O)N[C@....
70% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1NHE - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1YRO - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
3 1NF5 - BGC C6 H12 O6 C([C@@H]1[....
4 1O23 - GUD C15 H24 N2 O17 P2 C1=CN(C(=O....
5 2FYC - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
6 1PZY - NAG C8 H15 N O6 CC(=O)N[C@....
7 1NMM - NAG C8 H15 N O6 CC(=O)N[C@....
8 1NWG - BGN C10 H19 N O6 CCCC(=O)N[....
9 2FYD - NGA C8 H15 N O6 CC(=O)N[C@....
10 1NKH - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 1OQM - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
12 1NQI - NAG C8 H15 N O6 CC(=O)N[C@....
50% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1NHE - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1YRO - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
3 1NF5 - BGC C6 H12 O6 C([C@@H]1[....
4 1O23 - GUD C15 H24 N2 O17 P2 C1=CN(C(=O....
5 2FYC - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
6 1PZY - NAG C8 H15 N O6 CC(=O)N[C@....
7 1NMM - NAG C8 H15 N O6 CC(=O)N[C@....
8 1NWG - BGN C10 H19 N O6 CCCC(=O)N[....
9 2FYD - NGA C8 H15 N O6 CC(=O)N[C@....
10 1NKH - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 1OQM - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
12 1NQI - NAG C8 H15 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GUD; Similar ligands found: 94
No: Ligand ECFP6 Tc MDL keys Tc
1 GDU 1 1
2 UFM 1 1
3 UPG 1 1
4 GUD 1 1
5 USQ 0.8 0.846154
6 UFG 0.797619 0.943662
7 U2F 0.797619 0.943662
8 UPF 0.797619 0.943662
9 UD1 0.73913 0.985294
10 UD2 0.73913 0.985294
11 UGB 0.738636 0.985075
12 UGA 0.738636 0.985075
13 UDP 0.717949 0.941176
14 UDX 0.715909 0.970588
15 UAD 0.715909 0.970588
16 UDP GAL 0.715909 0.970588
17 UTP 0.7125 0.941176
18 IUG 0.693878 0.835443
19 G3N 0.692308 0.942857
20 C5G 0.688889 0.943662
21 URM 0.681818 0.956522
22 660 0.681818 0.956522
23 UPU 0.670588 0.970149
24 EPZ 0.650485 0.971014
25 3UC 0.648936 0.943662
26 UNP 0.647059 0.914286
27 EEB 0.644231 0.957143
28 EPU 0.644231 0.957143
29 U5P 0.641026 0.926471
30 HP7 0.636364 0.970588
31 UD7 0.636364 0.956522
32 2GW 0.632653 0.957143
33 MJZ 0.63 0.942857
34 UD4 0.623762 0.942857
35 UDH 0.615385 0.866667
36 UPP 0.615385 0.942029
37 UDZ 0.615385 0.88
38 UMA 0.598214 0.971014
39 44P 0.597561 0.901408
40 UDM 0.59596 0.942857
41 12V 0.592233 0.929577
42 HWU 0.592233 0.929577
43 1GW 0.590476 0.917808
44 2KH 0.586207 0.914286
45 Y6W 0.585106 0.916667
46 UDP UDP 0.576471 0.911765
47 U22 0.567797 0.8375
48 U21 0.567797 0.858974
49 U20 0.567797 0.858974
50 URI 0.552632 0.865672
51 U 0.552632 0.865672
52 CJB 0.551282 0.850746
53 UP5 0.527273 0.855263
54 UAG 0.523438 0.917808
55 2QR 0.520325 0.848101
56 DAU 0.519608 0.891892
57 U3P 0.511905 0.911765
58 UA3 0.511905 0.911765
59 CSQ 0.504762 0.878378
60 CSV 0.504762 0.878378
61 4TC 0.504425 0.833333
62 U U 0.5 0.927536
63 4RA 0.492308 0.857143
64 UD0 0.484848 0.846154
65 PUP 0.480392 0.887324
66 UML 0.478571 0.858974
67 U2P 0.476744 0.926471
68 CXY 0.471154 0.916667
69 GDD 0.463636 0.8
70 GKE 0.463636 0.8
71 GDC 0.463636 0.8
72 A U 0.461538 0.831169
73 CTP 0.447917 0.888889
74 CDP 0.446809 0.888889
75 CH 0.444444 0.861111
76 ADQ 0.443396 0.828947
77 DKX 0.44186 0.774648
78 U2S 0.43956 0.77027
79 UMF 0.438202 0.833333
80 U4S 0.433333 0.733333
81 DUT 0.43299 0.861111
82 U3S 0.423913 0.756757
83 5GW 0.421569 0.915493
84 DUD 0.421053 0.861111
85 5FU 0.417582 0.863014
86 C2G 0.417476 0.902778
87 UPA 0.416667 0.868421
88 7XL 0.415842 0.890411
89 U1S 0.415842 0.776316
90 U U U U 0.413462 0.913043
91 2TU 0.411765 0.777778
92 UTP U U U 0.409524 0.897059
93 139 0.406504 0.835443
94 APU 0.401639 0.831169
Ligand no: 2; Ligand: UDP; Similar ligands found: 116
No: Ligand ECFP6 Tc MDL keys Tc
1 UDP 1 1
2 UTP 0.892308 1
3 UNP 0.8 0.970149
4 U5P 0.78125 0.984615
5 UPU 0.72973 0.940298
6 2KH 0.722222 0.970149
7 44P 0.720588 0.955882
8 URM 0.717949 0.927536
9 GUD 0.717949 0.941176
10 GDU 0.717949 0.941176
11 UFM 0.717949 0.941176
12 UPG 0.717949 0.941176
13 660 0.717949 0.927536
14 UDP UDP 0.714286 0.939394
15 UDH 0.705128 0.864865
16 UPP 0.705128 0.941176
17 UPF 0.691358 0.888889
18 U2F 0.691358 0.888889
19 UFG 0.691358 0.888889
20 UDX 0.670732 0.941176
21 UAD 0.670732 0.941176
22 3UC 0.658824 0.888889
23 USQ 0.654762 0.820513
24 UGB 0.654762 0.955224
25 UGA 0.654762 0.955224
26 G3N 0.647059 0.914286
27 UDM 0.636364 0.914286
28 URI 0.625 0.863636
29 U 0.625 0.863636
30 UD1 0.622222 0.927536
31 UD2 0.622222 0.927536
32 UDP GAL 0.611765 0.913043
33 Y6W 0.607143 0.888889
34 CDP 0.605263 0.942029
35 UD7 0.591398 0.927536
36 HP7 0.591398 0.941176
37 MJZ 0.585106 0.914286
38 IUG 0.583333 0.810127
39 12V 0.578947 0.901408
40 HWU 0.578947 0.901408
41 UD4 0.578947 0.914286
42 CJB 0.573529 0.820895
43 UDZ 0.571429 0.853333
44 DUD 0.571429 0.913043
45 UP5 0.571429 0.853333
46 U U 0.563218 0.955224
47 EPZ 0.56 0.914286
48 5GW 0.559524 0.942029
49 EPU 0.554455 0.901408
50 EEB 0.554455 0.901408
51 UA3 0.547945 0.939394
52 U3P 0.547945 0.939394
53 CH 0.546667 0.913043
54 4TC 0.544554 0.831169
55 CTP 0.54321 0.942029
56 CSV 0.531915 0.851351
57 CSQ 0.531915 0.851351
58 DUT 0.52439 0.913043
59 4GW 0.516484 0.915493
60 UMA 0.513761 0.914286
61 U4S 0.513158 0.753425
62 U2P 0.506667 0.954545
63 U2S 0.5 0.767123
64 U3S 0.5 0.753425
65 PUP 0.48913 0.913043
66 U22 0.486957 0.790123
67 U21 0.486957 0.810127
68 U20 0.486957 0.810127
69 DKX 0.486486 0.746479
70 U1S 0.482759 0.75
71 A U 0.481132 0.805195
72 2QR 0.478632 0.822785
73 5FU 0.474359 0.914286
74 8OD 0.47191 0.851351
75 C5G 0.468085 0.888889
76 7XL 0.465909 0.888889
77 U U U U 0.461538 0.940298
78 UMF 0.461538 0.857143
79 G8D 0.460674 0.855263
80 UTP U U U 0.456522 0.895522
81 2TU 0.452055 0.774648
82 4RA 0.451613 0.855263
83 C2G 0.450549 0.901408
84 DU 0.45 0.898551
85 CAR 0.45 0.927536
86 C 0.45 0.927536
87 C5P 0.45 0.927536
88 UMP 0.45 0.898551
89 UAG 0.448 0.864865
90 CDC 0.446809 0.777778
91 UD0 0.444444 0.844156
92 5BU 0.444444 0.914286
93 N3E 0.440476 0.733333
94 UC5 0.440476 0.9
95 UUA 0.438356 0.772727
96 DUP 0.431818 0.887324
97 2GW 0.431373 0.901408
98 M7G 0.430108 0.780488
99 CNU 0.428571 0.927536
100 CDM 0.427083 0.842105
101 H6Y 0.425532 0.851351
102 16B 0.421687 0.888889
103 S5P 0.419753 0.915493
104 8GT 0.419355 0.855263
105 CXY 0.418367 0.888889
106 UPA 0.418182 0.842105
107 CDP MG 0.413793 0.849315
108 U2G 0.410714 0.822785
109 U A A U 0.409836 0.842105
110 UML 0.408759 0.810127
111 UP6 0.407407 0.871429
112 M7M 0.40625 0.771084
113 PMP UD1 0.404762 0.794872
114 1GW 0.40367 0.864865
115 BMP 0.402439 0.970149
116 APU 0.401786 0.828947
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YRO; Ligand: GDU; Similar sites found: 13
This union binding pocket(no: 1) in the query (biounit: 1yro.bio1) has 37 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2CBZ ATP 0.04061 0.41096 5.06329
2 5TZJ UD1 0.000125 0.42277 5.69106
3 1GA8 UPF 0.003453 0.41782 5.69106
4 1JI0 ATP 0.03749 0.41177 5.69106
5 4AG5 ADP 0.02796 0.42013 7.31707
6 5FJJ MAN 0.02328 0.42047 8.13008
7 2J5V PCA 0.04604 0.41631 8.94309
8 4PQG NAG 0.03147 0.40822 8.94309
9 1LL2 UPG 0.002213 0.43869 10.1399
10 1D8C GLV 0.03225 0.40321 12.5874
11 5UQK U2F 0.01226 0.40008 14.6853
12 2VOH CIT 0.02492 0.40706 26.9231
13 4IRP UDP 0.00000001753 0.40393 43.4263
Pocket No.: 2; Query (leader) PDB : 1YRO; Ligand: UDP; Similar sites found: 142
This union binding pocket(no: 2) in the query (biounit: 1yro.bio1) has 10 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4WG0 CHD 0.005725 0.41503 None
2 5OO5 UUA 0.02 0.40206 None
3 4GID 0GH 0.03251 0.42311 2.0979
4 4R4U COA 0.01451 0.40974 3.14685
5 4JNA FAD 0.04284 0.41747 3.25203
6 3Q60 ATP 0.01248 0.41413 3.25203
7 1IOW PHY 0.03901 0.40728 3.25203
8 1IOW ADP 0.03901 0.40728 3.25203
9 5DMZ ADP 0.02347 0.40228 3.25203
10 4CQE CQE 0.02627 0.40175 3.25203
11 5DEY 59T 0.01673 0.43328 3.4965
12 1PA9 CSN 0.00853 0.41337 3.52113
13 4JEM C5P 0.02829 0.40664 3.52941
14 3G5S FAD 0.007784 0.4535 4.06504
15 5W4W 9WG 0.01629 0.42045 4.06504
16 4KBA 1QM 0.02446 0.41514 4.06504
17 4EHU ANP 0.02604 0.40642 4.06504
18 4CZG QH3 0.04725 0.40178 4.06504
19 4CZG ADP 0.04553 0.40178 4.06504
20 2Q09 DI6 0.01625 0.40158 4.06504
21 2YCH ATP 0.00342 0.44081 4.1958
22 2YAB AMP 0.0008809 0.47416 4.54545
23 3CGB FAD 0.02877 0.42361 4.54545
24 4A59 AMP 0.003607 0.44893 4.87805
25 4WVO 3UZ 0.006898 0.4363 4.87805
26 1F76 ORO 0.004087 0.42578 4.87805
27 3ZYR ASN NAG NAG BMA MAN MAN NAG NAG 0.01672 0.40947 4.87805
28 3W7T BMA 0.01681 0.40686 4.87805
29 4L4J NAG NAG BMA MAN NAG 0.003779 0.40595 4.87805
30 2E2P ADP 0.02884 0.40555 4.87805
31 4X9M FAD 0.02505 0.42525 4.8951
32 3PE2 E1B 0.03244 0.42727 5.04451
33 3WHB DCC 0.04262 0.40148 5.15464
34 3D91 REM 0.01511 0.48129 5.24476
35 4C12 ADP 0.0137 0.46112 5.24476
36 4C12 UML 0.006376 0.46112 5.24476
37 1GR0 NAD 0.02648 0.41508 5.24476
38 5EOB 5QQ 0.002135 0.49551 5.69106
39 5U7W ADE 0.0006028 0.48187 5.69106
40 1E8C UAG API 0.02601 0.42196 5.69106
41 5TIV A3P 0.02322 0.41168 5.69106
42 4BGB ADP 0.02539 0.40936 5.69106
43 5MJA 7O3 0.01382 0.40915 5.69106
44 2NXW TPP 0.0213 0.40892 5.69106
45 3E0M SER HIS MET ALA GLU ILE 0.01425 0.40492 5.69106
46 1LUA NAP 0.02801 0.40468 5.69106
47 2XVD AS6 0.03298 0.40232 5.69106
48 2YHW BM3 0.002394 0.47242 5.94406
49 4RHP PEF 0.0169 0.40514 5.95745
50 4CSV STI 0.02121 0.40655 6.18182
51 3WQT ANP 0.0008233 0.48886 6.50407
52 4A2A ATP 0.007781 0.43655 6.50407
53 4YZC STU 0.01566 0.42443 6.50407
54 4EUE NAI 0.0278 0.42328 6.50407
55 4A2B AGS 0.009187 0.42145 6.50407
56 3WBD SIA SIA SIA SIA SIA SIA SIA 0.006759 0.41878 6.50407
57 5GZ9 ANP 0.01786 0.41046 6.50407
58 2GQS ADP 0.0139 0.40841 6.50407
59 3KDU NKS 0.0415 0.40729 6.50407
60 2Y6O 1N1 0.02045 0.4068 6.50407
61 4MWV BCZ 0.01901 0.40461 6.50407
62 4IIL RBF 0.02848 0.40177 6.50407
63 3FG2 FAD 0.04862 0.40058 6.50407
64 2GQR ADP 0.01499 0.40009 6.50407
65 2XZI KDM 0.00754 0.42923 6.64336
66 1XHL NDP 0.04198 0.42523 6.99301
67 5T79 NDP 0.02509 0.40869 6.99301
68 5EOU ATP 0.005334 0.45374 7.31707
69 5JFS 6K0 0.01226 0.44001 7.31707
70 4TWP AXI 0.03411 0.42935 7.31707
71 3I0O ADP 0.009886 0.42281 7.31707
72 1A59 COA 0.009161 0.42041 7.31707
73 3NJQ NJQ 0.009634 0.41475 7.31707
74 5A65 TPP 0.0187 0.41185 7.31707
75 3WXL ADP 0.01065 0.40732 7.31707
76 5BYZ 4WE 0.03217 0.40483 7.31707
77 5VC5 96M 0.00762 0.43681 7.34266
78 2OO8 RAJ 0.01183 0.41594 7.69231
79 4M20 COA 0.02008 0.4165 7.87402
80 1PG4 PRX 0.01888 0.42863 8.13008
81 1PG4 COA 0.01888 0.42863 8.13008
82 4LNU GTP 0.02439 0.40305 8.13008
83 2X4Z X4Z 0.04469 0.40052 8.13008
84 3HKW IX6 0.01423 0.43902 8.39161
85 4OH4 ANP 0.0255 0.40696 8.39161
86 3R1V AZB 0.03401 0.40076 8.66142
87 2JDR L20 0.03742 0.41158 8.74126
88 2JDR GLY ARG PRO ARG THR THR SER PHE ALA GLU 0.03742 0.41158 8.74126
89 3E7O 35F 0.02569 0.41146 8.74126
90 3NTA FAD 0.03951 0.41515 8.94309
91 1Q19 APC 0.02419 0.41345 8.94309
92 5D63 FUC GAL GLA 0.04176 0.41016 8.94309
93 4ZW9 GLC 0.01923 0.40745 8.94309
94 4ZW9 BGC 0.01923 0.40745 8.94309
95 3VSV XYP 0.01662 0.40521 8.94309
96 4A62 ANP 0.01686 0.41941 9.44056
97 3L2B B4P 0.01594 0.42432 9.7561
98 2B9W FAD 0.04538 0.41741 9.7561
99 4S15 4D8 0.0229 0.40668 9.7561
100 2Y6Q FAD 0.04279 0.40094 9.7561
101 1Q8Y ADP 0.01002 0.43291 10.1399
102 5ITZ GTP 0.02302 0.40623 10.2362
103 3UIM ANP 0.01091 0.42143 10.5691
104 3QCQ 3Q0 0.04341 0.42047 10.5691
105 3GDQ ADP 0.03249 0.40061 10.5691
106 1XCL SAH 0.04983 0.41406 10.6383
107 3AAQ ARU 0.004097 0.47557 11.3821
108 5IH1 6BQ 0.005648 0.47195 11.3821
109 5IH1 GDP 0.005648 0.47195 11.3821
110 2ZB3 NDP 0.03043 0.4198 11.3821
111 1MOQ GLP 0.0235 0.41495 11.3821
112 5DXT 5H5 0.01612 0.41418 11.3821
113 5HV7 RBL 0.00005702 0.44749 12.1951
114 1M13 HYF 0.02177 0.41571 12.1951
115 4JNE ATP 0.02095 0.41296 12.1951
116 4B9Q ATP 0.01979 0.40783 12.1951
117 3QKT ANP 0.02781 0.40653 12.1951
118 4BCM T7Z 0.01117 0.40427 12.1951
119 2F9L GDP 0.03261 0.40005 12.1951
120 4CJX NAP 0.001896 0.48101 13.0081
121 1PS9 FAD 0.01019 0.44557 13.0081
122 5B48 TDN 0.01524 0.42853 13.0081
123 2C0U FAD NBT 0.03841 0.40668 13.8211
124 2R5T ANP 0.02668 0.40587 13.8211
125 2VBF TPP 0.03211 0.40548 14.6341
126 3EWK FAD 0.03306 0.40098 14.6341
127 5NCY 8TK 0.04304 0.40149 15.4472
128 4BKJ STI 0.003748 0.44901 16.2602
129 3OZ2 OZ2 0.01116 0.44604 16.2602
130 4FE2 ADP 0.01036 0.41826 16.2602
131 3VGL ANP 0.02226 0.40682 17.8862
132 1TQP ATP 0.02251 0.40383 17.8862
133 4P7X YCP 0.01488 0.41719 18.6992
134 4P7X AKG 0.01488 0.41719 18.6992
135 3SUD SUE 0.02494 0.40279 19.7044
136 1NRL SRL 0.02536 0.40258 20
137 2NVA PL2 0.03179 0.40598 23.5772
138 5NTW 98N 0.03197 0.41263 30
139 5K2M ADP 0.02436 0.40159 30.0813
140 1N4H REA 0.02637 0.40701 33.3333
141 3EBL GA4 0.03854 0.40012 34.9594
142 2P54 735 0.03026 0.4166 41.6667
Pocket No.: 3; Query (leader) PDB : 1YRO; Ligand: UDP; Similar sites found: 56
This union binding pocket(no: 3) in the query (biounit: 1yro.bio2) has 10 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4JAL SAH 0.02391 0.40776 2.99401
2 3EKK GS2 0.04471 0.40674 3.14685
3 4BFM ANP 0.009466 0.41643 3.25203
4 4N9I PCG 0.03459 0.4268 3.33333
5 2J83 BAT 0.01817 0.40264 4.06504
6 3VHE 42Q 0.04703 0.4014 4.06504
7 5L92 C0R 0.02622 0.4186 4.1958
8 4PO2 ASN ARG LEU LEU LEU THR GLY 0.04209 0.40897 4.68085
9 3ZYR NAG NAG BMA MAN MAN NAG NAG 0.02448 0.40218 4.87805
10 3TDH AMP 0.01256 0.4119 5.02793
11 3CH6 311 0.01535 0.44797 5.59441
12 3CH6 NAP 0.01535 0.44797 5.59441
13 4OYA 1VE 0.03699 0.43106 5.69106
14 3C1X CKK 0.0298 0.40739 5.69106
15 2QCS ANP 0.03276 0.40731 5.69106
16 2QWO ADP 0.02249 0.40494 5.69106
17 2V52 ATP 0.035 0.40091 5.69106
18 4B1Y ATP 0.03664 0.40081 5.69106
19 3U5S FAD 0.04645 0.41678 6.34921
20 1P7L SAM 0.01915 0.42415 6.50407
21 1P7L PPK 0.02101 0.42062 6.50407
22 2UZH IPE 0.01373 0.40537 6.50407
23 2A40 ATP 0.02869 0.40502 6.50407
24 1USR DAN 0.02373 0.40412 6.50407
25 1FDJ 2FP 0.03785 0.40366 6.50407
26 2A42 ATP 0.03024 0.40326 6.50407
27 1I00 UMP 0.03064 0.40305 6.50407
28 1I00 D16 0.03064 0.40305 6.50407
29 2WCV FUC 0.01692 0.4017 6.50407
30 3GL0 HXX 0.01916 0.40137 6.50407
31 2A3Z ATP 0.03315 0.40042 6.50407
32 4PKG ATP 0.03043 0.40335 6.98925
33 1DMR PGD 0.01976 0.43579 7.31707
34 5LGD PLM 0.005285 0.43327 7.31707
35 5LI1 ANP 0.0243 0.40689 7.31707
36 1NVM NAD 0.02978 0.40539 7.31707
37 5A6N U7E 0.01397 0.40061 7.42049
38 3SJH ATP 0.03253 0.40261 9.25926
39 3SJH LAR 0.04692 0.40261 9.25926
40 3EWC MCF 0.01189 0.42463 9.79021
41 4KP7 1UQ 0.03287 0.41032 10.5691
42 5AR0 GB8 0.02398 0.40156 10.5691
43 2WU6 DKI 0.04357 0.40127 10.8392
44 5C1M CLR 0.01144 0.40565 11.2
45 1XOC VAL ASP SER LYS ASN THR SER SER TRP 0.03763 0.43034 11.3821
46 1YZN GNP 0.03594 0.40058 11.3821
47 4MO2 FDA 0.04284 0.40425 12.1951
48 5H3A D16 0.01131 0.416 13.0081
49 5H3A UMP 0.01216 0.40821 13.0081
50 5V3Y 5V8 0.01616 0.40152 13.0081
51 5F1X ATP 0.02615 0.41053 13.2867
52 5MZI FAD 0.01561 0.44259 14.6341
53 4OIV XX9 0.03394 0.41175 14.6341
54 4FHD 0TT 0.02167 0.41033 15.4472
55 4FHD EEM 0.02167 0.41033 15.4472
56 4LRJ ANP 0.02262 0.40509 21.1382
Pocket No.: 4; Query (leader) PDB : 1YRO; Ligand: GDU; Similar sites found: 8
This union binding pocket(no: 4) in the query (biounit: 1yro.bio2) has 38 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1HPG BOC ALA ALA PRO GLU 0.0361 0.40262 3.25203
2 4YRD 3IT 0.04323 0.41148 4.87805
3 2OVW CBI 0.006996 0.44772 5.69106
4 3VMG 9CA 0.02746 0.40871 9.7561
5 1GXU 2HP 0.04952 0.41143 10.989
6 4TX6 38B 0.04332 0.40189 13.0081
7 4COQ SAN 0.02208 0.42931 16.2602
8 3B9Q MLI 0.02514 0.40916 18.6992
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