Receptor
PDB id Resolution Class Description Source Keywords
1OF4 1.6 Å EC: 3.-.-.- STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE-BINDING MODULE, TMCBM27 THERMOTOGA MARITIMA HYDROLASE/CARBOHYDRATE BINDING MANNAN BINDING CARBOHYDRATE BINDING MODULE POLYSACCHARIDE DEGRADATION HYDROLASE
Ref.: STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE BINDING MODULE, TMCBM27 STRUCTURE V. 11 665 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BMA BMA BMA BMA BMA B:1;
 Valid;
 none;
 Kd = 2.9 uM
828.72 n/a O(C1O...
CA A:1181;
 Part of Protein;
 none;
 submit data
40.078 Ca [Ca+2...
GOL A:1179;
A:1180;
 Invalid;
Invalid;
 none;
none;
 submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1OF4 1.6 Å EC: 3.-.-.- STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE-BINDING MODULE, TMCBM27 THERMOTOGA MARITIMA HYDROLASE/CARBOHYDRATE BINDING MANNAN BINDING CARBOHYDRATE BINDING MODULE POLYSACCHARIDE DEGRADATION HYDROLASE
Ref.: STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE BINDING MODULE, TMCBM27 STRUCTURE V. 11 665 2003
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 283 families.
1 1OH4 Kd = 0.2 mM BMA BMA BMA BMA GLA BMA GLA n/a n/a
2 1OF4 Kd = 2.9 uM BMA BMA BMA BMA BMA n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 235 families.
1 1OH4 Kd = 0.2 mM BMA BMA BMA BMA GLA BMA GLA n/a n/a
2 1OF4 Kd = 2.9 uM BMA BMA BMA BMA BMA n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 193 families.
1 1OH4 Kd = 0.2 mM BMA BMA BMA BMA GLA BMA GLA n/a n/a
2 1OF4 Kd = 2.9 uM BMA BMA BMA BMA BMA n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BMA BMA BMA BMA BMA; Similar ligands found: 347
No: Ligand ECFP6 Tc MDL keys Tc
1 CT3 1 1
2 DXI 1 1
3 BGC BGC BGC GLC 1 1
4 CE8 1 1
5 MLR 1 1
6 GLC BGC BGC 1 1
7 BGC BGC BGC 1 1
8 CEY 1 1
9 BGC BGC BGC BGC 1 1
10 BMA BMA BMA BMA BMA 1 1
11 MAN BMA BMA BMA BMA BMA 1 1
12 MAN BMA BMA 1 1
13 BGC BGC BGC BGC BGC BGC BGC BGC BGC 1 1
14 GLA GAL BGC 1 1
15 BMA BMA BMA BMA BMA BMA 1 1
16 CTT 1 1
17 BGC GLC GLC 1 1
18 MAN BMA BMA BMA BMA 1 1
19 GLC BGC BGC BGC 1 1
20 BGC GLC GLC GLC GLC 1 1
21 GLC GLC GLC GLC GLC GLC GLC GLC GLC 1 1
22 GLC GAL GAL 1 1
23 CE5 1 1
24 MAN MAN BMA BMA BMA BMA 1 1
25 CTR 1 1
26 BGC GLC GLC GLC GLC GLC GLC 1 1
27 MT7 1 1
28 MTT 1 1
29 GLC BGC GLC 1 1
30 GAL GAL GAL 1 1
31 GLC BGC BGC BGC BGC 1 1
32 BMA MAN BMA 1 1
33 BMA BMA BMA 1 1
34 BGC BGC GLC 1 1
35 GLC GLC GLC GLC GLC 1 1
36 GLC BGC BGC BGC BGC BGC 1 1
37 BGC GLC GLC GLC 1 1
38 GLA GAL GLC 1 1
39 B4G 1 1
40 CEX 1 1
41 CE6 1 1
42 MAB 0.909091 1
43 CBK 0.909091 1
44 MAL 0.909091 1
45 BMA GAL 0.909091 1
46 BGC GAL 0.909091 1
47 LBT 0.909091 1
48 N9S 0.909091 1
49 BGC BMA 0.909091 1
50 GLC GAL 0.909091 1
51 GAL BGC 0.909091 1
52 LAT 0.909091 1
53 CBI 0.909091 1
54 BMA BMA 0.909091 1
55 B2G 0.909091 1
56 BGC BGC BGC BGC BGC BGC BGC BGC 0.830189 1
57 LAT GLA 0.765957 1
58 BMA BMA BMA GLA BMA 0.758621 1
59 BMA BMA GLA BMA BMA 0.758621 1
60 GLA GAL GAL 0.754717 1
61 GLC GLC GLC BGC 0.741379 1
62 BMA BMA BMA BMA 0.672414 0.941176
63 MMA MAN 0.653846 0.942857
64 DR5 0.653846 0.942857
65 NGA GAL BGC 0.650794 0.733333
66 GLA EGA 0.648148 0.942857
67 BGC BGC BGC XYS BGC BGC 0.647059 0.942857
68 XYS BGC BGC BGC BGC XYS BGC BGC BGC 0.647059 0.942857
69 XYS BGC BGC XYS BGC XYS BGC BGC BGC 0.647059 0.942857
70 XYT 0.637931 0.767442
71 ABD 0.637681 0.75
72 BMA BMA MAN GLA GLA 0.633333 1
73 GAL NGA GLA BGC GAL 0.628571 0.733333
74 GLC GLC XYP 0.622951 1
75 GLA GAL BGC 5VQ 0.62069 0.891892
76 G2F BGC BGC BGC BGC BGC 0.616667 0.868421
77 BGC BGC XYS BGC 0.61194 0.942857
78 MAL EDO 0.607143 0.942857
79 U63 0.6 0.891892
80 BGC BGC BGC XYS GAL 0.6 0.942857
81 NGA GLA GAL BGC 0.591549 0.733333
82 GLA GAL GLC NBU 0.590164 0.846154
83 NGR 0.584906 1
84 MAN GLC 0.584906 1
85 GLA GLA 0.584906 1
86 GLC GLC 0.584906 1
87 LB2 0.584906 1
88 GLA GAL 0.584906 1
89 M3M 0.584906 1
90 GLC BGC 0.584906 1
91 BGC BGC BGC FRU 0.580645 0.868421
92 GLC GAL NAG GAL 0.577465 0.733333
93 LAT NAG GAL 0.577465 0.733333
94 BGC GLA GAL FUC 0.573529 0.970588
95 OXZ BGC BGC 0.571429 0.6875
96 G3I 0.571429 0.767442
97 8B7 0.571429 0.970588
98 GAL FUC 0.571429 0.941176
99 GLC GLC G6D ACI GLC GLC GLC 0.571429 0.733333
100 G2I 0.571429 0.767442
101 BGC GAL NAG GAL 0.571429 0.733333
102 FUC GAL GLC 0.571429 0.970588
103 GLC GAL FUC 0.571429 0.970588
104 LAT FUC 0.571429 0.970588
105 FUC GAL GLC BGC 0.571429 0.970588
106 BGC GAL FUC 0.571429 0.970588
107 GAL NAG GAL GLC 0.571429 0.733333
108 BGC GLC 0.566038 1
109 BMA MAN 0.566038 1
110 2M4 0.566038 1
111 BQZ 0.56 0.909091
112 GLC GLC XYS 0.553846 0.970588
113 GLO GLC GLC GLC 0.545455 0.970588
114 BGC BGC BGC XYS BGC XYS GAL 0.545455 0.942857
115 LAG 0.545455 0.6
116 SOR GLC GLC GLC 0.545455 0.970588
117 GAL BGC BGC BGC XYS BGC XYS 0.545455 0.942857
118 GLC GLC ACI G6D GLC GLC 0.54321 0.702128
119 GLC GLC DAF BGC 0.54321 0.702128
120 AAO 0.54321 0.733333
121 ACR GLC GLC GLC 0.54321 0.702128
122 ARE 0.54321 0.733333
123 XYS BGC BGC XYS BGC XYS BGC GAL XYS BGC BGC 0.54321 0.942857
124 GLC GLC AGL HMC GLC 0.54321 0.702128
125 GLC BGC BGC XYS BGC XYS XYS 0.541667 0.942857
126 BGC BGC BGC XYS BGC XYS XYS 0.541667 0.942857
127 XYS BGC BGC XYS BGC XYS BGC 0.541667 0.942857
128 XYS BGC BGC XYS BGC BGC XYS 0.541667 0.942857
129 BGC BGC XYS BGC XYS BGC XYS 0.541667 0.942857
130 5GO 0.540984 0.66
131 NLC 0.540984 0.733333
132 GAL NDG 0.540984 0.733333
133 GAL BGC BGC XYS 0.536232 0.942857
134 GLC GLC BGC 0.534483 1
135 GLC GLC GLC 0.534483 1
136 DEL 0.534483 0.970588
137 GLC GLC GLC GLC 0.534483 1
138 GLC BGC BGC BGC BGC BGC BGC 0.534483 1
139 BGC BGC BGC GLC BGC BGC 0.534483 1
140 BGC BGC BGC BGC BGC BGC 0.534483 1
141 MVP 0.533333 0.733333
142 SGA BGC 0.532258 0.66
143 TRE 0.531915 1
144 BGC BGC 0.526316 0.914286
145 LMU 0.523077 0.785714
146 LMT 0.523077 0.785714
147 DMU 0.523077 0.785714
148 UMQ 0.523077 0.785714
149 NAG GAL BGC 0.521127 0.733333
150 GLC G6D ADH GLC 0.519481 0.733333
151 GLC G6D ACI GLC 0.519481 0.733333
152 GLC ACI GLD GLC 0.519481 0.733333
153 GLC ACI G6D BGC 0.519481 0.733333
154 BGC BGC XYS BGC GAL XYS BGC XYS GAL 0.518519 0.942857
155 GAL BGC BGC BGC XYS XYS 0.518519 0.942857
156 GAL XYS BGC BGC XYS XYS BGC GAL BGC 0.518519 0.942857
157 GLC BGC BGC XYS BGC XYS XYS GAL GAL 0.518519 0.942857
158 GLC BGC BGC XYS BGC XYS XYS GAL 0.518519 0.942857
159 XYS BGC GAL BGC BGC BGC XYS GAL XYS 0.518519 0.942857
160 GAL XYS XYS BGC BGC XYS BGC BGC 0.518519 0.942857
161 XYS GAL GLC BGC BGC XYS BGC XYS 0.518519 0.942857
162 GAL XYS XYS BGC BGC BGC XYS GAL BGC 0.518519 0.942857
163 BMA MAN MAN MAN 0.516129 1
164 FUC BGC GAL 0.515625 0.970588
165 FUC GLC BGC GAL 0.515625 0.970588
166 SOR GLC GLC 0.515152 0.970588
167 RCB 0.514286 0.622642
168 GAL BGC NAG GAL 0.513889 0.733333
169 GLA MBG 0.509091 0.942857
170 DAF BGC GLC 0.506667 0.733333
171 ACI GLD GLC GAL 0.506667 0.733333
172 DAF GLC GLC 0.506667 0.733333
173 6UZ 0.5 0.846154
174 TXT 0.5 0.767442
175 MAN MAN BMA 0.5 1
176 GAC 0.5 0.767442
177 BMA BMA MAN 0.5 1
178 GAL BGC NAG NAG GAL GAL 0.493976 0.6875
179 GLC ACI G6D GLC 0.493827 0.702128
180 GLC ACI GLD GAL 0.493827 0.702128
181 QV4 0.493827 0.733333
182 BGC BGC BGC BGC BGC BGC BGC 0.491803 1
183 BGC BGC BGC BGC BGC 0.491803 1
184 GLC GLC GLC PO4 SGC GLC 0.487805 0.66
185 NPJ 0.485714 0.622642
186 MAN BMA MAN 0.484375 1
187 MAN MAN MAN 0.484375 1
188 ACR 0.481013 0.733333
189 QPS 0.481013 0.733333
190 4MU BGC BGC BGC BGC 0.480519 0.767442
191 GAL NAG MAN 0.478873 0.733333
192 BGC BGC XYS BGC XYS XYS GAL 0.47561 0.942857
193 DOM 0.474576 0.942857
194 GLO GLC GLC 0.472222 0.942857
195 10M 0.471429 0.733333
196 GLA GAL NAG 0.471429 0.733333
197 MAN BMA NAG 0.471429 0.733333
198 GAL GAL SO4 0.469697 0.66
199 8VZ 0.46875 0.673469
200 FMO 0.467742 0.868421
201 4MU BGC BGC 0.467532 0.767442
202 BGC BGC SGC MGL 0.465753 0.868421
203 MGL SGC GLC GLC 0.465753 0.868421
204 MGL SGC BGC BGC 0.465753 0.868421
205 CM5 0.465753 0.891892
206 ACR GLC GLC GLC GLC 0.4625 0.702128
207 ACR GLC 0.4625 0.702128
208 BGC BGC XYS XYS GAL 0.4625 0.942857
209 NAG GAL GAL NAG GAL 0.460526 0.6875
210 CGC 0.460317 0.941176
211 MA4 0.459459 0.891892
212 5QP 0.459016 0.885714
213 BGC GLC AC1 GLC GLC GLC AC1 0.457831 0.702128
214 ACI G6D GLC ACI G6D BGC 0.457831 0.702128
215 DAF GLC DAF GLC GLC 0.457831 0.702128
216 ACI GLD GLC ACI G6D BGC 0.457831 0.702128
217 ACI GLD GLC GLC GLC ACI GLD GLC GAL 0.457831 0.702128
218 AC1 GLC AC1 BGC 0.457831 0.702128
219 MDM 0.457627 0.942857
220 M13 0.457627 0.942857
221 MAN MMA 0.457627 0.942857
222 GAL MBG 0.457627 0.942857
223 RZM 0.457627 0.688889
224 LSE 0.457143 0.6875
225 GLA GAL NAG FUC GAL GLC 0.454545 0.717391
226 G6D GLC ACI GLD GLC ACI GLD GLC BGC 0.453488 0.653061
227 GTM BGC BGC 0.450704 0.868421
228 MAN MAN BMA MAN 0.449275 1
229 MAN MAN MAN MAN 0.449275 1
230 ACG 0.448276 0.695652
231 NAG BMA 0.447761 0.653061
232 GAL GLC NAG GAL FUC 0.447059 0.717391
233 FUC GAL NAG GAL BGC 0.447059 0.717391
234 GLC NAG GAL GAL FUC 0.447059 0.717391
235 GAL A2G 0.446154 0.733333
236 GAL NAG 0.446154 0.733333
237 GAL NGA 0.446154 0.733333
238 NAG GAL 0.446154 0.733333
239 BMA MAN MAN MAN MAN 0.444444 1
240 M5S 0.442857 1
241 MAN BMA MAN MAN MAN 0.442857 1
242 NAG GAL GAL NAG 0.441558 0.6875
243 GAL NAG GAL NAG GAL NAG 0.441558 0.673469
244 MAN MAN MAN GLC 0.441176 1
245 GAL GAL 0.440678 1
246 GAL GLC 0.440678 1
247 LAK 0.440678 1
248 MAN BMA 0.440678 1
249 MLB 0.440678 1
250 MAN MAN 0.440678 1
251 GLA GLC 0.440678 1
252 BMA GLA 0.440678 1
253 BGC GLA 0.440678 1
254 GLA BGC 0.440678 1
255 GLA BMA 0.440678 1
256 DAF GLC 0.44 0.733333
257 DAF BGC 0.44 0.733333
258 BGC SGC BGC SGC BGC SGC BGC SGC 0.438356 0.916667
259 TM6 0.438356 0.916667
260 ABL 0.4375 0.702128
261 FRU GAL 0.435484 0.842105
262 BMA FRU 0.435484 0.842105
263 W9T 0.435484 0.842105
264 FUC GLA GLA 0.432836 0.970588
265 FUC GAL GLA 0.432836 0.970588
266 GAL GAL FUC 0.432836 0.970588
267 GLA GAL FUC 0.432836 0.970588
268 GLA GLA FUC 0.432836 0.970588
269 GLF B8D 0.428571 0.775
270 BGC OXZ 0.428571 0.666667
271 IFM BGC 0.428571 0.711111
272 VAM 0.428571 0.868421
273 IFM BMA 0.428571 0.711111
274 A2G GAL GLC FUC 0.428571 0.717391
275 ISX 0.428571 0.761905
276 BMA IFM 0.428571 0.711111
277 9MR 0.428571 0.744186
278 A2G GAL BGC FUC 0.428571 0.717391
279 7SA 0.426966 0.702128
280 GLC GAL NAG GAL FUC FUC 0.426966 0.702128
281 BGC GAL NAG GAL FUC FUC 0.426966 0.702128
282 MAN MAN MAN BMA MAN 0.426667 1
283 A2G GAL 0.426471 0.653061
284 GLC GLC GLC GLC BGC 0.42623 1
285 BMA MAN MAN 0.42623 1
286 GLC GLC GLC GLC GLC BGC 0.42623 1
287 GLC DMJ 0.421875 0.695652
288 NOJ GLC 0.421875 0.695652
289 MAN MNM 0.421875 0.702128
290 NOY BGC 0.421875 0.702128
291 PA1 GCS 0.419355 0.767442
292 GCS GCS 0.419355 0.767442
293 3SA 0.417722 0.733333
294 HMC AGL GLC 0.417722 0.717391
295 GAL 0.416667 0.848485
296 ALL 0.416667 0.848485
297 GXL 0.416667 0.848485
298 MAN 0.416667 0.848485
299 GIV 0.416667 0.848485
300 GLA 0.416667 0.848485
301 GLC 0.416667 0.848485
302 BGC 0.416667 0.848485
303 6SA 0.416667 0.733333
304 WOO 0.416667 0.848485
305 BMA 0.416667 0.848485
306 XZZ BGC BGC 0.416667 0.702128
307 BGC GLC AC1 GLC AC1 0.41573 0.702128
308 ACI GLD GLC ACI GLD GLC ACI GLD GLC GLC 0.41573 0.673469
309 3SA 3SA 0.41573 0.702128
310 HSD G6D GLC HSD G6D GLC GLC 0.41573 0.673469
311 ACI G6D GLC ACI G6D GLC GLC 0.41573 0.673469
312 HSD G6D GLC HSD G6D GLC BGC 0.41573 0.673469
313 GAL NAG GAL 0.415584 0.702128
314 GCS GCS GCS GCS GCS 0.415385 0.767442
315 GCS GCS GCS 0.415385 0.767442
316 GCS GCS GCS GCS GCS GCS GCS GCS 0.415385 0.804878
317 GCS GCS GCS GCS GCS GCS 0.415385 0.767442
318 P3M 0.414286 0.767442
319 MAN DGO 0.412698 0.914286
320 AGL GLC HMC AGL GLC BGC 0.411111 0.653061
321 NAG NAG BMA 0.410256 0.634615
322 NAG NDG BMA 0.410256 0.634615
323 T6P 0.409836 0.767442
324 MAN G63 0.409091 0.653061
325 GDQ GLC 0.409091 0.666667
326 FUC BGC GAL NAG GAL 0.409091 0.717391
327 MMA 0.403846 0.857143
328 AMG 0.403846 0.857143
329 GYP 0.403846 0.857143
330 MBG 0.403846 0.857143
331 MAN 7D1 0.403226 0.888889
332 GAL MGC 0.402985 0.702128
333 BGC BGC XYS BGC XYS GAL 0.4 0.916667
334 A2G GAL NAG FUC GAL GLC 0.4 0.673469
335 MAN MAN MAN MAN MAN MAN MAN 0.4 1
336 RIB 0.4 0.742857
337 FUB 0.4 0.742857
338 GLC GAL NAG GAL FUC A2G 0.4 0.673469
339 FUC NDG GAL 0.4 0.717391
340 A2G MBG 0.4 0.702128
341 MBG A2G 0.4 0.702128
342 Z6J 0.4 0.742857
343 FUC NAG GAL 0.4 0.717391
344 AHR 0.4 0.742857
345 BDR 0.4 0.742857
346 32O 0.4 0.742857
347 GAL NDG FUC 0.4 0.717391
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1OF4; Ligand: BMA BMA BMA BMA BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1of4.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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