Receptor
PDB id Resolution Class Description Source Keywords
1OFD 2 Å EC: 1.4.7.1 GLUTAMATE SYNTHASE FROM SYNECHOCYSTIS SP IN COMPLEX WITH 2-OXOGLUTARATE AT 2.0 ANGSTROM RESOLUTION SYNECHOCYSTIS SP. OXIDOREDUCTASE COMPLEX ENZYME SUBSTRATE CHANNELING AMIDOTRANSFERASE FLAVOPROTEIN IRON-SULPHUR FD-GOGAT
Ref.: THE ACTIVE CONFORMATION OF GLUTAMATE SYNTHASE AND I BINDING TO FERREDOXIN J.MOL.BIOL. V. 330 113 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AKG A:3510;
B:3510;
Valid;
Valid;
none;
none;
submit data
146.098 C5 H6 O5 C(CC(...
F3S A:3509;
B:3509;
Part of Protein;
Part of Protein;
none;
none;
submit data
295.795 Fe3 S4 S1[Fe...
FMN A:3508;
B:3508;
Valid;
Valid;
none;
none;
submit data
456.344 C17 H21 N4 O9 P Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1OFD 2 Å EC: 1.4.7.1 GLUTAMATE SYNTHASE FROM SYNECHOCYSTIS SP IN COMPLEX WITH 2-OXOGLUTARATE AT 2.0 ANGSTROM RESOLUTION SYNECHOCYSTIS SP. OXIDOREDUCTASE COMPLEX ENZYME SUBSTRATE CHANNELING AMIDOTRANSFERASE FLAVOPROTEIN IRON-SULPHUR FD-GOGAT
Ref.: THE ACTIVE CONFORMATION OF GLUTAMATE SYNTHASE AND I BINDING TO FERREDOXIN J.MOL.BIOL. V. 330 113 2003
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AKG; Similar ligands found: 6
No: Ligand ECFP6 Tc MDL keys Tc
1 AKG 1 1
2 OOG 0.5 0.947368
3 69O 0.458333 0.714286
4 2IT 0.423077 0.615385
5 SHF 0.416667 0.666667
6 3PY 0.409091 0.652174
Ligand no: 2; Ligand: FMN; Similar ligands found: 16
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 RS3 0.571429 0.831169
4 FAS 0.543307 0.876543
5 FAD 0.543307 0.876543
6 FAE 0.539062 0.865854
7 DAL FAD PER 0.5 0.833333
8 LFN 0.475 0.643836
9 C3F 0.473684 0.74359
10 CF4 0.463918 0.734177
11 FAY 0.446043 0.864198
12 FNR 0.444444 0.909091
13 RFL 0.442857 0.845238
14 4LS 0.411215 0.875
15 1VY 0.406593 0.769231
16 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1OFD; Ligand: AKG; Similar sites found: 145
This union binding pocket(no: 1) in the query (biounit: 1ofd.bio2) has 34 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4TMC FMN 0.000003918 0.55028 1.73697
2 4TMC HBA 0.000004675 0.5364 1.73697
3 5OCS FMN 0.0000003649 0.61522 2.15633
4 5OE4 3UK 0.01319 0.40089 2.2113
5 3MJY IJZ 0.0002048 0.43828 2.31214
6 3MJY FMN 0.0002048 0.43828 2.31214
7 3ATY FMN 0.000004322 0.46709 2.37467
8 2R14 FMN 0.000002967 0.53454 2.65252
9 4JIQ 1L5 0.000005388 0.5289 2.65252
10 2R14 TXD 0.00000731 0.50169 2.65252
11 4JIQ FMN 0.000005388 0.4685 2.65252
12 4JBL MET 0.04909 0.40234 2.65487
13 1OYB FMN 0.000005565 0.53838 2.75
14 1OYB HBA 0.000008746 0.5157 2.75
15 1PS9 FMN 0.00001538 0.44016 2.98063
16 1OX5 1PR 0.002233 0.41628 3.06306
17 1XC6 GAL 0.03489 0.40283 3.0896
18 4D86 ADP 0.01039 0.40847 3.13253
19 2Q3R FMN 0.0000005201 0.47472 3.22581
20 2YPI PGA 0.0007981 0.4868 3.23887
21 1VYP FMN 0.000007048 0.46471 3.2967
22 1VYP TNF 0.000007609 0.45839 3.2967
23 3W9Z FMN 0.000006049 0.43801 3.41615
24 4WA2 SIA GAL NAG 0.003351 0.46775 3.42742
25 1ICP FMN 0.000001948 0.49671 3.45745
26 2HSA FMN 0.0000005875 0.55244 3.48259
27 1Z42 FMN 0.000006507 0.58538 3.5503
28 1Z44 FMN 0.000009314 0.57041 3.5503
29 1Z41 FMN 0.000008305 0.56595 3.5503
30 1Z48 FMN 0.000009661 0.42 3.5503
31 4NAE 1GP 0.001162 0.49395 3.55556
32 3LL5 IP8 0.0129 0.43564 3.61446
33 4BWL MN9 0.03612 0.40911 3.61842
34 1P4C FMN 0.000004002 0.49523 3.68421
35 4M5P FMN 0.00001585 0.52931 3.6855
36 3KRU FMN 0.00008228 0.45236 3.79009
37 2ZRU FMN 0.000001569 0.50089 3.80435
38 2Q3O FMN 0.000001528 0.56791 3.83632
39 1DJN FMN 0.0001004 0.42297 3.84088
40 2F6U CIT 0.006708 0.44911 3.84615
41 2RDT 2RD 0.00001611 0.4743 3.87597
42 2RDT FMN 0.000006159 0.46842 3.87597
43 4A3U FMN 0.000004759 0.45295 3.91061
44 3PA8 621 0.03689 0.40913 3.93701
45 4EWN 0VR 0.00467 0.43494 3.95257
46 1GTE FMN 0.0002962 0.43108 4
47 1GTE IUR 0.0002962 0.43108 4
48 2Y88 2ER 0.002435 0.40459 4.09836
49 4H6B 10Y 0.04368 0.40131 4.10256
50 1I7E IBS 0.0298 0.41624 4.15094
51 4IXH IMP 0.006776 0.40775 4.15512
52 2F5X ASP 0.02349 0.41978 4.16667
53 1AL8 FMN 0.000006402 0.5358 4.17827
54 1AL8 DHP 0.00004762 0.47471 4.17827
55 3B0P FMN 0.0000001405 0.65032 4.28571
56 4Q4K FMN 0.000001124 0.49071 4.48179
57 3EXS 5RP 0.0008596 0.48516 4.52489
58 5A5W GUO 0.002895 0.40628 4.74308
59 1EP2 FMN 0.00002365 0.4942 4.82315
60 1EP2 ORO 0.00002894 0.46703 4.82315
61 4WZH FMN 0.0001425 0.42209 4.89914
62 4QNW FMN 0.0000007672 0.58707 5.10204
63 1WS1 BB2 0.02265 0.40209 5.12821
64 3OIX FMN 0.000091 0.42152 5.21739
65 1YRB GDP 0.01411 0.41198 5.34351
66 1VBO MAN 0.02031 0.41564 5.36913
67 1VBO MAN MAN MAN 0.02786 0.40392 5.36913
68 2NLI FMN 0.000000427 0.49458 5.43478
69 2NLI LAC 0.03225 0.4002 5.43478
70 1MFA GLA MMA ABE 0.01974 0.42429 5.51181
71 4D00 SIA GAL NAG 0.01181 0.43133 5.52147
72 2BTM PGA 0.002926 0.46306 5.55556
73 2FJK 13P 0.02983 0.40635 5.57377
74 1QDS PGA 0.0007029 0.48961 5.57769
75 1XXR MAN 0.04296 0.40133 5.59006
76 1ISI NCA 0.02032 0.4077 5.66038
77 2GOU FMN 0.00002437 0.47489 5.75342
78 4OHB 5HM 0.01372 0.42373 5.78947
79 3VKC FPQ 0.01184 0.40296 5.94406
80 2GN3 MAN 0.0238 0.42246 5.95238
81 2GND MAN 0.04158 0.40951 5.95238
82 2GN3 MMA 0.0348 0.40632 5.95238
83 2GND MAN MMA 0.04221 0.40593 5.95238
84 2PHF MAN MAN 0.04764 0.40305 5.95238
85 2B4G FMN 0.0004364 0.4108 5.99369
86 5N53 8NB 0.02126 0.42258 6.15385
87 1TB3 FMN 0.00001636 0.4705 6.25
88 2Z6I FMN 0.000001449 0.5689 6.3253
89 2Z6J FMN 0.000001244 0.5398 6.3253
90 5EYW PGA 0.003807 0.45708 6.4257
91 1TV5 FMN 0.0001035 0.47264 6.54628
92 2NU5 NAG 0.008129 0.43758 6.55738
93 2GUC MAN 0.007936 0.4369 6.55738
94 2GUD MAN 0.009208 0.43231 6.55738
95 2HYR BGC GLC 0.01383 0.41773 6.55738
96 2NUO BGC 0.01444 0.4055 6.55738
97 1KBI PYR 0.000004275 0.47782 6.65362
98 1S17 GNR 0.01835 0.40024 6.66667
99 2GJN FMN 0.0000005827 0.56834 6.70732
100 2GJN NIS 0.0000009138 0.54994 6.70732
101 4POS NAG SIA GAL 0.03053 0.40583 6.83453
102 1F76 FMN 0.00001914 0.45231 6.84524
103 1RL4 BRR 0.02517 0.41402 6.91489
104 1VHN FMN 0.00003912 0.5466 6.91824
105 4ORM 2V6 0.0005256 0.4536 7.23192
106 4ORM ORO 0.0005256 0.4536 7.23192
107 4ORM FMN 0.0005256 0.4536 7.23192
108 1OVD FMN 0.00005307 0.46702 7.71704
109 1OVD ORO 0.00005307 0.44796 7.71704
110 1UJP CIT 0.00967 0.41635 7.74908
111 4IGH FMN 0.000319 0.463 7.7957
112 4IGH 1EA 0.000319 0.463 7.7957
113 4IGH ORO 0.000319 0.463 7.7957
114 2C6Q IMP 0.008137 0.40166 7.97721
115 1KBJ FMN 0.000003455 0.47659 8.25243
116 3C3N FMN 0.0001043 0.44298 8.65385
117 4I9A NCN 0.009804 0.41607 8.68056
118 1GXU 2HP 0.02661 0.40162 8.79121
119 4FOU C2E 0.004281 0.42926 9.09091
120 3HF3 FMN 0.000001072 0.47437 9.45559
121 3LRE ADP 0.02985 0.41065 9.57747
122 4CW5 FMN 0.000008404 0.43362 10.3524
123 4GDX GLU 0.03095 0.41447 10.4278
124 3BW2 FMN 0.000005706 0.50987 10.8401
125 5XVQ 8GC 0.04325 0.403 10.9155
126 4UTU LRY 0.001251 0.46682 10.917
127 4NS0 PIO 0.03315 0.41572 11.2782
128 4MDB RLT 0.04105 0.40623 12
129 1T3D CYS 0.01706 0.42911 13.1488
130 3OVR 5SP 0.002643 0.42831 13.1579
131 4XP7 FNR 0.000001086 0.45776 13.2948
132 3UBQ SIA GAL 0.006838 0.43086 13.5593
133 1SW0 PGA 0.0008554 0.47991 13.7097
134 1UGW GAL 0.03664 0.41726 14.2857
135 1UGY GLA BGC 0.03335 0.41725 14.2857
136 1JAC AMG 0.03404 0.41555 14.2857
137 1UGY GLA GLC 0.03631 0.41552 14.2857
138 4N02 FNR 0.000001714 0.48069 14.5658
139 3P48 DUP 0.03277 0.40075 14.966
140 3E3U NVC 0.01114 0.4205 15.2284
141 1LOB MMA 0.03181 0.40864 15.4696
142 1LES GLC FRU 0.02974 0.41226 17.1271
143 4DR9 BB2 0.02119 0.40348 18.2292
144 3QH2 3NM 0.0007331 0.50065 19.0045
145 1JOT GAL A2G 0.03867 0.40996 40
Pocket No.: 2; Query (leader) PDB : 1OFD; Ligand: FMN; Similar sites found: 145
This union binding pocket(no: 2) in the query (biounit: 1ofd.bio2) has 36 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4TMC FMN 0.000002921 0.55919 1.73697
2 4TMC HBA 0.000005501 0.53678 1.73697
3 5OCS FMN 0.0000004391 0.61522 2.15633
4 5OE4 3UK 0.0136 0.40251 2.2113
5 3MJY IJZ 0.0002169 0.42905 2.31214
6 3MJY FMN 0.0002169 0.42905 2.31214
7 3ATY FMN 0.000005195 0.4541 2.37467
8 2R14 FMN 0.000003601 0.53454 2.65252
9 4JIQ 1L5 0.000006487 0.5289 2.65252
10 2R14 TXD 0.00000892 0.50169 2.65252
11 4JIQ FMN 0.000006487 0.45523 2.65252
12 1OYB FMN 0.000004019 0.54772 2.75
13 1OYB HBA 0.000006629 0.52382 2.75
14 1FNN ADP 0.019 0.40169 2.82776
15 1PS9 FMN 0.0000182 0.42869 2.98063
16 1OX5 1PR 0.004734 0.40574 3.06306
17 4D86 ADP 0.01164 0.40847 3.13253
18 2Q3R FMN 0.0000006266 0.46103 3.22581
19 2YPI PGA 0.0003307 0.50903 3.23887
20 1VYP FMN 0.000008467 0.45157 3.2967
21 1VYP TNF 0.000009443 0.44486 3.2967
22 3W9Z FMN 0.000007135 0.42627 3.41615
23 4WA2 SIA GAL NAG 0.003702 0.46775 3.42742
24 1ICP FMN 0.000002388 0.48191 3.45745
25 2HSA FMN 0.0000007276 0.55244 3.48259
26 1Z42 FMN 0.00000757 0.58538 3.5503
27 1Z44 FMN 0.00001084 0.57041 3.5503
28 1Z41 FMN 0.00000971 0.56595 3.5503
29 1Z48 FMN 0.00001128 0.40899 3.5503
30 4NAE 1GP 0.0005268 0.51337 3.55556
31 3LL5 IP8 0.01413 0.43564 3.61446
32 4BWL MN9 0.03928 0.40911 3.61842
33 1P4C FMN 0.000004909 0.48056 3.68421
34 4M5P FMN 0.00001337 0.53573 3.6855
35 3KRU FMN 0.00008342 0.44284 3.79009
36 2ZRU FMN 0.000002115 0.50349 3.80435
37 2Q3O FMN 0.000001585 0.57071 3.83632
38 1DJN FMN 0.0001175 0.41277 3.84088
39 2F6U CIT 0.001501 0.48649 3.84615
40 2RDT 2RD 0.00001952 0.4612 3.87597
41 2RDT FMN 0.000007407 0.45546 3.87597
42 4A3U FMN 0.000006384 0.44011 3.91061
43 4EWN 0VR 0.004648 0.43739 3.95257
44 1GTE IUR 0.0002645 0.43714 4
45 1GTE FMN 0.0002645 0.43714 4
46 2Y88 2ER 0.0006555 0.42034 4.09836
47 4H6B 10Y 0.03203 0.40683 4.10256
48 1I7E IBS 0.03238 0.41624 4.15094
49 4IXH IMP 0.001829 0.43435 4.15512
50 2F5X ASP 0.02568 0.41978 4.16667
51 1AL8 FMN 0.000007312 0.53664 4.17827
52 1AL8 DHP 0.00005583 0.47505 4.17827
53 4BHL ARG 0.02688 0.42163 4.21348
54 3B0P FMN 0.0000001689 0.65032 4.28571
55 4Q4K FMN 0.0000003954 0.49437 4.48179
56 3EXS 5RP 0.0009764 0.48491 4.52489
57 5A5W GUO 0.0006827 0.42455 4.74308
58 1EP2 FMN 0.000028 0.4944 4.82315
59 1EP2 ORO 0.00003877 0.46727 4.82315
60 4WZH FMN 0.0001662 0.41163 4.89914
61 4QNW FMN 0.0000008549 0.58859 5.10204
62 1WS1 BB2 0.02505 0.40209 5.12821
63 3OIX FMN 0.0001106 0.4099 5.21739
64 1YRB GDP 0.01566 0.41198 5.34351
65 1VBO MAN 0.02202 0.41564 5.36913
66 1VBO MAN MAN MAN 0.03021 0.40392 5.36913
67 2NLI LAC 0.000001486 0.48566 5.43478
68 2NLI FMN 0.0000005209 0.47991 5.43478
69 1MFA GLA MMA ABE 0.02151 0.42429 5.51181
70 4D00 SIA GAL NAG 0.01301 0.43133 5.52147
71 2BTM PGA 0.001559 0.47986 5.55556
72 2FJK 13P 0.02977 0.40848 5.57377
73 1QDS PGA 0.0003796 0.50595 5.57769
74 1XXR MAN 0.008239 0.42825 5.59006
75 1ISI NCA 0.02244 0.4077 5.66038
76 2GOU FMN 0.00002548 0.46417 5.75342
77 3VKC FPQ 0.004169 0.42533 5.94406
78 2GN3 MMA 0.006594 0.44206 5.95238
79 2GN3 MAN 0.02571 0.42246 5.95238
80 2PHR MAN MAN 0.03037 0.41581 5.95238
81 2PHW MAN MAN 0.0313 0.41509 5.95238
82 2PHT MAN MAN MAN 0.03849 0.41191 5.95238
83 2GND MAN 0.04507 0.40951 5.95238
84 2B4G FMN 0.0005128 0.4012 5.99369
85 4HKP 16B 0.01774 0.40308 6.08974
86 1O68 KIV 0.03148 0.41495 6.18182
87 1TB3 FMN 0.00001976 0.45769 6.25
88 2Z6I FMN 0.0000003319 0.60021 6.3253
89 2Z6J FMN 0.0000003671 0.56406 6.3253
90 5EYW PGA 0.001382 0.48261 6.4257
91 2V68 CAP 0.01745 0.40047 6.42857
92 1TV5 FMN 0.000118 0.47323 6.54628
93 2GUC MAN 0.008603 0.4369 6.55738
94 2GUD MAN 0.009972 0.43231 6.55738
95 2HYR BGC GLC 0.01173 0.43096 6.55738
96 2NU5 NAG 0.01342 0.41333 6.55738
97 1KBI PYR 0.000005173 0.46433 6.65362
98 1S17 GNR 0.02036 0.40029 6.66667
99 2GJN FMN 0.0000002269 0.58883 6.70732
100 2GJN NIS 0.0000003498 0.5701 6.70732
101 1F76 FMN 0.00002059 0.44159 6.84524
102 1IGW PYR 0.04681 0.40462 6.91244
103 1VHN FMN 0.00004497 0.5466 6.91824
104 4ORM 2V6 0.000675 0.44412 7.23192
105 4ORM FMN 0.000675 0.44412 7.23192
106 4ORM ORO 0.000675 0.44412 7.23192
107 1OVD FMN 0.000077 0.45485 7.71704
108 1OVD ORO 0.000077 0.44881 7.71704
109 1UJP CIT 0.006886 0.42555 7.74908
110 4IGH 1EA 0.0004322 0.45237 7.7957
111 4IGH FMN 0.0004322 0.45237 7.7957
112 4IGH ORO 0.0004322 0.45237 7.7957
113 4JOB TLA 0.01628 0.40154 7.82828
114 2C6Q IMP 0.001852 0.43091 7.97721
115 2ZE3 AKG 0.02288 0.42359 8
116 1KBJ FMN 0.000004175 0.46318 8.25243
117 3C3N FMN 0.0001394 0.44427 8.65385
118 4I9A NCN 0.004075 0.43627 8.68056
119 1GXU 2HP 0.02865 0.40162 8.79121
120 3HF3 FMN 0.00000128 0.46053 9.45559
121 3LRE ADP 0.03236 0.41065 9.57747
122 4CW5 FMN 0.000009432 0.42273 10.3524
123 4GDX GLU 0.03363 0.41447 10.4278
124 3BW2 FMN 0.000002079 0.53004 10.8401
125 5XVQ 8GC 0.04687 0.403 10.9155
126 4UTU LRY 0.001367 0.46748 10.917
127 4NS0 PIO 0.03217 0.4178 11.2782
128 3GAY P6T 0.01753 0.40039 11.7647
129 4MDB RLT 0.04439 0.40623 12
130 1T3D CYS 0.01708 0.43084 13.1488
131 3OVR 5SP 0.002909 0.42893 13.1579
132 4XP7 FNR 0.000001297 0.44478 13.2948
133 3UBQ SIA GAL 0.00778 0.4304 13.5593
134 1SW0 PGA 0.0003861 0.49981 13.7097
135 1UGW GAL 0.03937 0.41726 14.2857
136 1UGY GLA BGC 0.03585 0.41725 14.2857
137 1JAC AMG 0.03659 0.41555 14.2857
138 1UGY GLA GLC 0.03901 0.41552 14.2857
139 4N02 FNR 0.000001871 0.46856 14.5658
140 3P48 DUP 0.032 0.40334 14.966
141 3E3U NVC 0.01236 0.4205 15.2284
142 1LES GLC FRU 0.03217 0.41226 17.1271
143 4DR9 BB2 0.02345 0.40348 18.2292
144 3QH2 3NM 0.0008552 0.49966 19.0045
145 1JOT GAL A2G 0.04153 0.40996 40
Pocket No.: 3; Query (leader) PDB : 1OFD; Ligand: AKG; Similar sites found: 31
This union binding pocket(no: 3) in the query (biounit: 1ofd.bio1) has 34 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3II1 BGC 0.03521 0.40057 1.49533
2 3ODU ITD 0.02157 0.42178 1.59363
3 2X1L MET 0.04443 0.40565 1.71756
4 1EC9 XYH 0.01825 0.4034 2.46637
5 4GAA BES 0.02181 0.40288 2.62726
6 1FNN ADP 0.01776 0.40089 2.82776
7 2OG2 MLI 0.01857 0.40008 3.34262
8 5TP0 BRN 0.02595 0.41793 3.57143
9 2HXW FLC 0.04992 0.40194 4.64135
10 1QVJ RP5 0.02816 0.41817 5.13699
11 2TOH HBI 0.04869 0.4029 5.24781
12 1VPD TLA 0.0252 0.41172 5.68562
13 1A0J BEN 0.03384 0.4116 5.8296
14 2GMM MAN MAN 0.008185 0.44647 5.95238
15 2PHR MAN MAN 0.02188 0.42145 5.95238
16 2PHW MAN MAN 0.02287 0.42041 5.95238
17 2PHF MAN MAN BMA MAN 0.02038 0.41887 5.95238
18 2PHR MAN MAN BMA MAN 0.02404 0.41508 5.95238
19 2PHT MAN MAN MAN BMA MAN 0.02688 0.40869 5.95238
20 1O68 KIV 0.02615 0.41725 6.18182
21 1P4V GLY 0.04678 0.40504 6.44068
22 3MBI HSX 0.03767 0.40474 6.62021
23 3I7V ATP 0.01882 0.41462 6.71642
24 1N71 COA 0.01435 0.40216 7.77778
25 1UI0 URA 0.02879 0.40033 8.29268
26 3SLS 77D 0.01597 0.41284 9.53947
27 1AD4 HH2 0.00226 0.45431 10.9023
28 2PW0 TRC 0.04908 0.40791 12.0907
29 4YMJ 4EJ 0.03924 0.40827 12.5
30 3T7V MD0 0.04238 0.40583 12.5714
31 4DZ1 DAL 0.0449 0.40356 12.7413
Pocket No.: 4; Query (leader) PDB : 1OFD; Ligand: FMN; Similar sites found: 31
This union binding pocket(no: 4) in the query (biounit: 1ofd.bio1) has 36 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3ODU ITD 0.02368 0.4217 1.59363
2 4ME6 ADP 0.03779 0.41106 2.07254
3 1NSA BEN 0.0236 0.41194 2.27848
4 1EC9 XYH 0.01483 0.40982 2.46637
5 4GAA BES 0.02413 0.40288 2.62726
6 4RW3 IPD 0.02982 0.41221 2.82895
7 1ZGS XMM 0.03842 0.41048 4.47427
8 1VPD TLA 0.01869 0.42651 5.68562
9 4UMA GZ3 0.02495 0.41247 5.69801
10 4OHB 5HM 0.02673 0.40072 5.78947
11 1A0J BEN 0.03682 0.4116 5.8296
12 2GMM MAN MAN 0.008946 0.44647 5.95238
13 2GND MAN MMA 0.02406 0.42133 5.95238
14 2PHF MAN MAN BMA MAN 0.02203 0.41921 5.95238
15 2PHF MAN MAN 0.0275 0.41817 5.95238
16 2PHR MAN MAN BMA MAN 0.02634 0.41508 5.95238
17 2PHT MAN MAN MAN BMA MAN 0.02949 0.40869 5.95238
18 1Q8S MAN MMA 0.04669 0.40384 5.95238
19 1Q8Q MAN MMA 0.04841 0.40292 5.95238
20 3DGB MUC 0.025 0.40879 6.02094
21 1N71 COA 0.01544 0.4029 7.77778
22 1PTR PRB 0.03669 0.41362 8
23 1UI0 URA 0.03114 0.40033 8.29268
24 4FOU C2E 0.004991 0.42854 9.09091
25 1M3U KPL 0.04901 0.40065 9.4697
26 3SLS 77D 0.01864 0.41168 9.53947
27 3LJU IP9 0.0471 0.41302 9.84456
28 1AD4 HH2 0.002536 0.45431 10.9023
29 4YMJ 4EJ 0.04265 0.40827 12.5
30 3T7V MD0 0.02508 0.42035 12.5714
31 4DZ1 DAL 0.04888 0.40568 12.7413
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