Receptor
PDB id Resolution Class Description Source Keywords
1R5L 1.5 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF HUMAN ALPHA-TOCOPHEROL TRANSFER PROTEIN BOUND TO ITS LIGAND HOMO SAPIENS ATTP TOCOPHEROL ATAXIA WITH VITAMIN E DEFICIENCY TRANSPORT PROTEIN
Ref.: CRYSTAL STRUCTURE OF HUMAN ALPHA-TOCOPHEROL TRANSFER PROTEIN BOUND TO ITS LIGAND: IMPLICATIONS FOR ATAXIA WITH VITAMIN E DEFICIENCY PROC.NATL.ACAD.SCI.USA V. 100 14713 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
VIV A:301;
Valid;
none;
submit data
430.706 C29 H50 O2 Cc1c(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1R5L 1.5 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF HUMAN ALPHA-TOCOPHEROL TRANSFER PROTEIN BOUND TO ITS LIGAND HOMO SAPIENS ATTP TOCOPHEROL ATAXIA WITH VITAMIN E DEFICIENCY TRANSPORT PROTEIN
Ref.: CRYSTAL STRUCTURE OF HUMAN ALPHA-TOCOPHEROL TRANSFER PROTEIN BOUND TO ITS LIGAND: IMPLICATIONS FOR ATAXIA WITH VITAMIN E DEFICIENCY PROC.NATL.ACAD.SCI.USA V. 100 14713 2003
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 1OIP - VIV C29 H50 O2 Cc1c(c2c(c....
2 1R5L - VIV C29 H50 O2 Cc1c(c2c(c....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 3W68 - 4PT C17 H36 O22 P4 CCC[C@@H](....
2 5MUG - VIV C29 H50 O2 Cc1c(c2c(c....
3 6ZPD Kd = 14.25 nM VIV C29 H50 O2 Cc1c(c2c(c....
4 5MUE - VIV C29 H50 O2 Cc1c(c2c(c....
5 1OIP - VIV C29 H50 O2 Cc1c(c2c(c....
6 1R5L - VIV C29 H50 O2 Cc1c(c2c(c....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 3W68 - 4PT C17 H36 O22 P4 CCC[C@@H](....
2 5MUG - VIV C29 H50 O2 Cc1c(c2c(c....
3 6ZPD Kd = 14.25 nM VIV C29 H50 O2 Cc1c(c2c(c....
4 5MUE - VIV C29 H50 O2 Cc1c(c2c(c....
5 1OIP - VIV C29 H50 O2 Cc1c(c2c(c....
6 1R5L - VIV C29 H50 O2 Cc1c(c2c(c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: VIV; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 VIT 1 1
2 VIV 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: VIV; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1R5L; Ligand: VIV; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1r5l.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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