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Receptor
PDB id Resolution Class Description Source Keywords
1RRG 2.4 Å NON-ENZYME: TRANSPORT NON-MYRISTOYLATED RAT ADP-RIBOSYLATION FACTOR-1 COMPLEXED WITH GDP, DIMERIC CRYSTAL FORM RATTUS NORVEGICUS TRANSPORT PROTEIN GDP-BINDING MEMBRANE TRAFFICKING HOMODIMER
Ref.: THE STRUCTURE OF RAT ADP-RIBOSYLATION FACTOR-1 (ARF-1) COMPLEXED TO GDP DETERMINED FROM TWO DIFFERENT CRYSTAL FORMS. NAT.STRUCT.BIOL. V. 2 797 1995
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:183;
B:183;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:182;
B:182;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1O3Y 1.5 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF MOUSE ARF1 (DELTA17-Q71L), GTP FORM MUS MUSCULUS PROTEIN TRANSPORT
Ref.: MOLECULAR MECHANISM OF MEMBRANE RECRUITMENT OF GGA BY ARF IN LYSOSOMAL PROTEIN TRANSPORT NAT.STRUCT.BIOL. V. 10 386 2003
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (11)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1O3Y; Ligand: GTP; Similar sites found with APoc: 642
This union binding pocket(no: 1) in the query (biounit: 1o3y.bio2) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 3Q72 GNP None
2 2W58 ADP None
3 2GJ8 ALF GDP None
4 4D81 ADP None
5 1UJ2 ADP None
6 1UJ2 C5P None
7 1BO4 COA None
8 1UKZ ADP None
9 1KO8 6PG None
10 6ACS CIT None
11 4GBM A3P None
12 5XKT GNP 1.20482
13 2FFQ GSP 1.80723
14 2Y8E GNP 1.80723
15 5KSP GDP 1.80723
16 1D2E GDP 1.80723
17 1DAK DPU 1.80723
18 1DAK ADP 1.80723
19 4WEI GLC GAL 1.80723
20 4PVR ASP 1.80723
21 3BOS CDP 1.80723
22 3L6C MLI 1.80723
23 3QVV A3P 1.80723
24 3KC1 2T6 1.80723
25 1R0X ATP 2.40964
26 2IS6 ADP 2.40964
27 3B7G ANP 2.40964
28 1CR1 TTP 2.40964
29 3BFX A3P 2.40964
30 1T5C ADP 2.40964
31 2JBH 5GP 2.40964
32 4QDI ATP 2.40964
33 2J0V GDP 3.01205
34 2D2F ADP 3.01205
35 3IO3 ADP 3.01205
36 4XGU ADP 3.01205
37 4PX9 ADP 3.01205
38 2GKS ADP 3.01205
39 3TBK ANP 3.01205
40 2D7D ADP 3.01205
41 2QZ4 ADP 3.01205
42 5E5U MLI 3.01205
43 4WZ6 ATP 3.01205
44 4UXH T5A 3.01205
45 3BER AMP 3.01205
46 3ITJ CIT 3.01205
47 3BD9 A3P 3.01205
48 5H4S RAM 3.01205
49 4NCN GTP 3.61446
50 4TMZ GSP 3.61446
51 2PZE ATP 3.61446
52 1G7S GDP 3.61446
53 1V8K ANP 3.61446
54 5U32 GDP 3.61446
55 1DAR GDP 3.61446
56 3EWA ANP 3.61446
57 2DPY ADP 3.61446
58 5Y6N ADP 3.61446
59 2RGX AP5 3.61446
60 3DZD ADP 3.61446
61 1NJF ADP 3.61446
62 2C9O ADP 3.61446
63 1NJF AGS 3.61446
64 3UIE ANP 3.61446
65 5WRI A3P 3.61446
66 1M0S CIT 3.61446
67 1NST A3P 3.61446
68 4M7V RAR 3.61446
69 5WRJ A3P 3.61446
70 4TL6 ANP 3.61446
71 3FSY SCA 3.91566
72 3BFV ADP 4.05904
73 5J1J ANP 4.21053
74 4P3Y GDP 4.21687
75 3U6B GDP 4.21687
76 5W76 GDP 4.21687
77 2BVN GNP 4.21687
78 3U6K GDP 4.21687
79 5H7J GCP 4.21687
80 5H7K GDP 4.21687
81 5JBQ GDP 4.21687
82 1D8T GDP 4.21687
83 4G5G GDP 4.21687
84 2HCJ GDP 4.21687
85 4HI0 GDP 4.21687
86 1XKV ATP 4.21687
87 3EZ2 ADP 4.21687
88 3Q9L ATP 4.21687
89 1FP6 ADP 4.21687
90 3FKQ ATP 4.21687
91 6C90 ADP 4.21687
92 2R4V GSH 4.21687
93 5G3Y ADP 4.21687
94 3H86 AP5 4.21687
95 5H68 AGS 4.21687
96 5K5Z ANP 4.21687
97 4GOX A3P 4.21687
98 4ZDJ UTP 4.21687
99 3QKT ANP 4.21687
100 2O0J ADP 4.21687
101 5AHO TLA 4.21687
102 3FJG 3PG 4.21687
103 2Z5F A3P 4.21687
104 4LJ9 ACP 4.71976
105 1F2U ATP 4.72973
106 3WY9 GDP 4.81928
107 5W7Q GDP 4.81928
108 3LRE ADP 4.81928
109 4LPS GDP 4.81928
110 3ZFD ANP 4.81928
111 3WYA GDP 4.81928
112 3E70 GDP 4.81928
113 5GOE GDP 4.81928
114 4ZG4 VO4 ADP 4.81928
115 4V03 ADP 4.81928
116 1IWE IMP 4.81928
117 4IEE AGS 4.81928
118 2FAH GDP 4.81928
119 2FSH ANP 4.81928
120 5VGR GDP 4.81928
121 4BFW ZVW 4.81928
122 4IOK XPO 4.81928
123 4IOK ADP 4.81928
124 1P4V GLY 4.81928
125 1OS1 PYR 4.81928
126 1OS1 ATP 4.81928
127 5ZB0 TYD 4.81928
128 5ZB0 ADP 4.81928
129 3FYH ADP 4.81928
130 1V6A TRE 4.81928
131 3AB4 THR 4.81928
132 1O9P MLA 4.81928
133 2GDJ ANP 4.81928
134 1GPJ CIT 4.81928
135 2B4B COA 4.81928
136 3CV2 OXL 4.81928
137 4KBF AMP 4.93151
138 2VOH CIT 5.09554
139 4FCW ADP 5.14469
140 5YT0 GDP 5.42169
141 2C77 GNP 5.42169
142 2C78 GNP 5.42169
143 2Y65 ADP 5.42169
144 5XDR ADP 5.42169
145 3IIJ ADP 5.42169
146 3KTA AP5 5.42169
147 1Z6T ADP 5.42169
148 2QEN ADP 5.42169
149 3VX3 ADP 5.42169
150 1YTM ATP 5.42169
151 4TTQ ATP 5.42169
152 3N29 GOL 5.42169
153 3LL4 2FP 5.42169
154 1W5T ADP 5.42169
155 2ZTS ADP 5.42169
156 1W5T ANP 5.42169
157 4NZ6 DGL 5.42169
158 4FMS BDP 5.42169
159 1XEX ATP 5.42169
160 1GOJ ADP 6.0241
161 1SVI GDP 6.0241
162 1QF5 GDP 6.0241
163 1QF5 RPL 6.0241
164 2XTN GTP 6.0241
165 3KJI ADP 6.0241
166 1XX6 ADP 6.0241
167 3DKP ADP 6.0241
168 2YOH WMJ 6.0241
169 2IXE ATP 6.0241
170 4A4Z ANP 6.0241
171 3QXC ATP 6.0241
172 3DC4 ADP 6.0241
173 1P72 ADP 6.0241
174 1Z83 AP5 6.0241
175 1SVM ATP 6.0241
176 5NM7 GLY 6.0241
177 4HSE ADP 6.0241
178 1JJV ATP 6.0241
179 3BP1 GUN 6.0241
180 1SQL GUN 6.16438
181 3LN9 FLC 6.47482
182 1GXU 2HP 6.59341
183 1SKQ GDP 6.62651
184 3VMF GTP 6.62651
185 4PPF FLC 6.62651
186 4KFU ACP 6.62651
187 2RCN GDP 6.62651
188 2WHX ADP 6.62651
189 5ZXD ATP 6.62651
190 2ZR9 DTP 6.62651
191 4OHY ANP 6.62651
192 5LTJ BEF 6.62651
193 5UIV ADP 6.62651
194 4KVA GTP 6.62651
195 1S3G AP5 6.62651
196 4MKG AP5 6.62651
197 4MKF AP5 6.62651
198 1IN4 ADP 6.62651
199 1E2K TMC 6.62651
200 1NY5 ADP 6.62651
201 3FVQ ATP 6.62651
202 2JLR ANP 6.62651
203 4YS0 ADP 6.62651
204 1OFH ADP 6.62651
205 3NHB ADP 6.62651
206 1G41 ADP 6.62651
207 5LTJ ADP 6.62651
208 2JAQ DCP 6.62651
209 2CBZ ATP 6.62651
210 2HK9 ATR 6.62651
211 5TIV A3P 6.62651
212 5DT6 GLU 6.62651
213 5BYK OAQ 6.62651
214 5BYK A3P 6.62651
215 1T8U UAP SGN IDS SGN 6.62651
216 1YRB GDP 7.22892
217 4RD0 GDP 7.22892
218 5W75 GDP 7.22892
219 2VVG ADP 7.22892
220 3A4M ADP 7.22892
221 1MKY GDP 7.22892
222 1SQ5 ADP 7.22892
223 3T34 GDP 7.22892
224 1G6O ADP 7.22892
225 2B8W ALF 5GP 7.22892
226 3FWY ADP 7.22892
227 1F5N GNP 7.22892
228 5LB3 ADP 7.22892
229 2OBM ADP 7.22892
230 4NE2 ADP 7.22892
231 4NE2 SH2 7.22892
232 4IDN GNP 7.22892
233 2WOJ ADP ALF 7.22892
234 2QG6 NMN 7.22892
235 1G3Q ADP 7.22892
236 1AKY AP5 7.22892
237 5W75 SUC 7.22892
238 4TMK T5A 7.22892
239 1F9V ADP 7.22892
240 1CM0 COA 7.22892
241 5MVR ADP 7.40741
242 1HTW ADP 7.59494
243 4OI4 ATP 7.82609
244 4J0Q GDP 7.83133
245 4ZKD GDP 7.83133
246 1BG2 ADP 7.83133
247 1TQ4 GDP 7.83133
248 5HCN GCP 7.83133
249 1XMV ADP 7.83133
250 5GVR LMR 7.83133
251 5L3V GDP 7.83133
252 5BQ5 ADP BEF 7.83133
253 5G41 AP5 7.83133
254 1VKJ A3P 7.83133
255 1ZIN AP5 7.83133
256 5MZN ADP 7.83133
257 6H5E ANP 7.83133
258 4RZ3 ADP 7.83133
259 5I34 GDP 7.83133
260 5LLB 6YZ 7.83133
261 4ZNL BEF ADP 7.83133
262 2XAU ADP 7.83133
263 2QN6 GDP 8.43373
264 5FG3 GDP 8.43373
265 1WDT GTP 8.43373
266 3B9Q MLI 8.43373
267 1LVG ADP 8.43373
268 2OG2 MLI 8.43373
269 5IRR GSP 8.43373
270 2HF9 GSP 8.43373
271 6DEF GCP 8.43373
272 4YDS ATP 8.43373
273 5L3R GCP 8.43373
274 4R2I ANP 8.43373
275 4XTR ATP 8.43373
276 4XVU ATP 8.43373
277 4BQS K2Q 8.43373
278 4BQS ADP 8.43373
279 2Q2Y ADP 8.43373
280 2Q2Y MKR 8.43373
281 4XTR ADP 8.43373
282 5Z69 AGS 8.43373
283 3TMK T5A 8.43373
284 2OZE AGS 8.43373
285 1TL2 NDG 8.43373
286 4PJ3 ANP 8.43373
287 1WUU GLA 8.43373
288 4JBL MET 8.43373
289 1QF9 ALF 8.76289
290 1QF9 ADP 8.76289
291 1QF9 C5P 8.76289
292 1B7T ADP 8.97436
293 2AWN ADP 9.03614
294 1WF3 GNP 9.03614
295 4PC3 GDP 9.03614
296 1M7G AV2 9.03614
297 4H1V GNP 9.03614
298 5WC2 ADP 9.03614
299 2VB6 ADP BEF 9.03614
300 4LYA ATP 9.03614
301 5KSZ GCP 9.03614
302 4PFO ADP 9.03614
303 4NU0 AP5 9.03614
304 1M7G ADP 9.03614
305 1M7G ADX 9.03614
306 5IRN ADP 9.03614
307 1KYA XYD 9.03614
308 2X7I CIT 9.03614
309 1KK8 BEF ADP 9.09091
310 3CNL GNP 9.63855
311 5CK5 GDP 9.63855
312 2XT3 ADP 9.63855
313 5IFS ADP 9.63855
314 5AOG IAC 9.63855
315 4QRH 0O2 9.63855
316 3HU3 AGS 9.63855
317 2BEK ATP 9.63855
318 1W4R TTP 9.63855
319 2ORV 4TA 9.63855
320 2KIN ADP 10
321 5KUT GDP 10.241
322 4Q1A UDP 10.241
323 4Q1A 2XZ 10.241
324 4YJ1 ADP 10.241
325 1IHU AF3 10.241
326 4QM7 GTP 10.241
327 1IHU ADP 10.241
328 4Y4V DAL 10.241
329 1XP8 AGS 10.241
330 3R7F CP 10.241
331 4PU6 ASP 10.687
332 6G14 G4P 10.8434
333 1PUJ GNP 10.8434
334 5L3S GNP 10.8434
335 4X8O AP5 10.8434
336 5L3W GDP 10.8434
337 1VHT BA3 10.8434
338 3FB4 AP5 10.8434
339 3RC3 ANP 10.8434
340 5L3S G 10.8434
341 1RRC ADP 10.8434
342 5VHC BEF ADP 10.8434
343 5J1S ATP 10.8434
344 1NHX FTB 10.8434
345 1NHX PEP 10.8434
346 2GMV UN8 10.8434
347 2GMV PEP 10.8434
348 5YV5 ADP 10.8434
349 6A20 ADP 11.4458
350 2CDN ADP 11.4458
351 5ZBR ANP 11.4458
352 2PL3 ADP 11.4458
353 3P4X ADP 11.4458
354 1LK7 DER 11.4458
355 3MD0 GDP 12.0482
356 5TSH ANP 12.0482
357 5TSH ADP 12.0482
358 1W0J ADP 12.0482
359 6B4K ANP 12.0482
360 1ION ADP 12.0482
361 1W0J ADP BEF 12.0482
362 5EXT ADP 12.0482
363 1NN5 2DT 12.0482
364 1NN5 ANP 12.0482
365 6AR9 3L4 12.0482
366 5H67 ATP 12.0482
367 3KIF GDL 12.2642
368 3H4S ADP 12.6506
369 3TK1 GDP 12.6506
370 4P4T GDP 12.6506
371 3IUY AMP 12.6506
372 4FRZ ADP 12.6506
373 4B47 GDP 13.2231
374 2HT6 GDP 13.253
375 3WXM GTP 13.253
376 2CJW GDP 13.253
377 4JLV ADP 13.253
378 1Y63 ADP 13.253
379 1OE0 TTP 13.253
380 3KIH GDL 13.4021
381 4AG5 ADP 13.8554
382 5I0H ADP BEF 13.8554
383 4IHQ ADP 13.8554
384 1U0J ADP 13.8554
385 2CHG ANP 13.8554
386 4LO2 GAL BGC 14.2857
387 1G7C 5GP 14.4578
388 1LVK MNT BEF 14.4578
389 1X6V ADP 14.4578
390 4WOP CTP 14.4578
391 2OFW ADX 14.4578
392 6FAA ADP 14.4578
393 4CVN ADP 14.5985
394 5N69 ADP 15.0602
395 2BIF SIN 15.0602
396 2BIF ANP 15.0602
397 1OYY AGS 15.0602
398 3QF7 ANP 15.6627
399 2ZPA ADP 15.6627
400 2GK6 ADP 15.6627
401 1SES AMP 15.6627
402 4NFE BEN 15.6627
403 3ZS9 ADP ALF 15.7895
404 2CK3 ANP 16
405 2V7Q ADP 16
406 2V7Q ATP 16
407 2CK3 ADP 16
408 5M04 GDP 16.2651
409 4E03 ADP 16.2651
410 2PEZ DAT 16.2651
411 2PEZ GGZ 16.2651
412 3RLF ANP 16.2651
413 2QQ0 ADP 16.2651
414 2QQ0 TMP 16.2651
415 2QQ0 ANP 16.2651
416 2QQ0 THM 16.2651
417 1G8S MET 16.2651
418 2NCD ADP 16.8675
419 2ZE7 DST 16.8675
420 3CX8 GSP 17.4699
421 3AB3 GDP 17.4699
422 1ZCB GDP 17.4699
423 2IYL GDP 17.4699
424 1RJ9 GCP 17.4699
425 4WZA ACP 17.4699
426 4WZA ADP 17.4699
427 4LC1 GDP 18.0723
428 1P9B GDP 18.0723
429 2J5V PCA 18.0723
430 1R6B ADP 18.0723
431 1P9B HDA 18.0723
432 1W7J ADP BEF 18.543
433 1GWN GTP 18.6747
434 1M7B GTP 18.6747
435 5FTB ANP 18.6747
436 5FHD ADP ALF 18.6747
437 4QOS ADP 18.6747
438 1KK1 GNP 19.8795
439 1I4D GDP 19.8795
440 2WKQ GTP 19.8795
441 2W2X GSP 19.8795
442 2FJU GSP 19.8795
443 3SBD GNP 19.8795
444 1RYH GNP 19.8795
445 1HE1 AF3 19.8795
446 1HE1 GDP 19.8795
447 1DS6 GDP 19.8795
448 1E96 GTP 20.4819
449 4U5X GNP 20.4819
450 2ZEJ GDP 20.4819
451 2CE7 ADP 20.4819
452 6CS8 F9Y 20.4819
453 5BN3 ADP 21.0843
454 1XPJ TLA 21.4286
455 1CS4 GSP 21.6867
456 6AU6 GDP 21.6867
457 2XTZ GSP 21.6867
458 3DEF GDP 21.6867
459 1FNN ADP 21.6867
460 1D5C GDP 22.2222
461 3CH5 GDP 22.2892
462 3GJ5 GDP 22.2892
463 4HAT GNP 22.2892
464 5UWT GNP 22.2892
465 5UWU GNP 22.2892
466 5UWH GNP 22.2892
467 5UWP GNP 22.2892
468 5UWQ GNP 22.2892
469 5UWW GNP 22.2892
470 5BXQ GDP 22.2892
471 5UWO GNP 22.2892
472 5UWS GNP 22.2892
473 5DIF GNP 22.2892
474 3GJ3 GDP 22.2892
475 3GJ0 GDP 22.2892
476 3GJ7 GDP 22.2892
477 3GJ4 GDP 22.2892
478 5UWI GNP 22.2892
479 3EC1 GDP 22.2892
480 5UWR GNP 22.2892
481 5UWJ GNP 22.2892
482 1MH1 GNP 22.2892
483 1IBR GNP 22.2892
484 5DI9 GNP 22.2892
485 3GJ8 GDP 22.2892
486 1G4U AF3 22.2892
487 1G4U GDP 22.2892
488 2FNA ADP 22.2892
489 2Z48 NGA 22.2892
490 2Z49 AMG 22.2892
491 3GJX GTP 22.8916
492 4R43 GDP 22.8916
493 1ZUI SKM 22.8916
494 3REF GDP 23.494
495 5OEC GDP 23.494
496 6CIT GNP 23.8095
497 3WYF GTP 24.0964
498 3M1I GTP 24.0964
499 2ZJ5 ADP 24.6988
500 1K6M AGS 25.3012
501 6B8B ADP 25.9036
502 5M7P ADP 25.9036
503 1GRN AF3 26.506
504 1A4R GNH 26.506
505 1A4R GDP 26.506
506 4YC7 GNP 26.506
507 1GRN GDP 26.506
508 2WMO GTP 26.506
509 4ITR GDP 26.506
510 2NGR GDP 26.506
511 4DID GDP 26.506
512 2NGR AF3 26.506
513 1TAD ALF 27.1084
514 1TAD GDP 27.1084
515 5UPK GNP 27.1084
516 1NF3 GNP 27.1084
517 1GOT GDP 27.1084
518 3ZIA ATP 27.5362
519 3ZIA ADP 27.5362
520 2GCO GNP 27.8607
521 2GCN GDP 27.8607
522 1X1R GDP 28.0899
523 1BH2 GSP 28.3133
524 3T12 GDP ALF 28.3133
525 1FQJ ALF 28.3133
526 1FQK ALF 28.3133
527 2ODE ALF GDP 28.3133
528 1FQJ GDP 28.3133
529 1FQK GDP 28.3133
530 6CRK GDP 28.3133
531 5KDO GDP 28.3133
532 1GP2 GDP 28.3133
533 1Y3A GDP 28.3133
534 3T1O GDP 28.3133
535 5AK0 8V1 28.3133
536 5UQW GDP 28.5714
537 1SVK ALF GDP 28.9157
538 3ZQ6 ADP ALF 28.9157
539 5TB5 GDP 29.1892
540 5TAR GDP 29.1892
541 5XC5 GTP 30.1205
542 4KVG GTP 30.1205
543 3Q85 GNP 30.7229
544 5HR5 ADP 30.7229
545 6FA4 GNP 31.2139
546 4HDO GNP 31.3253
547 4HDQ GNP 31.3253
548 3X1Z GNP 31.3253
549 1H65 GDP 31.3253
550 5DHF GNP 31.5789
551 6D5E GNP 31.7365
552 6BVJ GNP 31.7365
553 6BVL GNP 31.7365
554 6BVI GNP 31.7365
555 6D5J GNP 31.7365
556 6BVK GNP 31.7365
557 6D56 GNP 31.7365
558 6D5H GNP 31.7365
559 6D5G GNP 31.7365
560 6D55 GNP 31.7365
561 6D5L GNP 31.7365
562 6D59 GNP 31.7365
563 6BVM GNP 31.7365
564 6D5M GNP 31.7365
565 6D5V GNP 31.7365
566 2EW1 GNP 31.9277
567 1NVV GNP 31.9277
568 4D0G GTP 31.9277
569 2UZI GTP 31.9277
570 3DDC GNP 31.9277
571 1CLU DBG 31.9277
572 3KUD GDP 31.9277
573 6BSX GDP 31.9277
574 1WQ1 GDP 31.9277
575 3T5G GDP 31.9277
576 6BSX E7S 31.9277
577 1WQ1 AF3 31.9277
578 5O2T GSP 31.9527
579 1GUA GNP 32.0988
580 2BME GNP 32.5301
581 5WLB GNP 32.5301
582 4LX0 BEF GDP 32.5301
583 2D7C GTP 32.5301
584 4C4P GNP 32.5301
585 5JCZ GDP 32.5301
586 2F9L GDP 32.5301
587 1UAD GNP 33.1325
588 2HV8 GTP 33.1325
589 5OCG GNP 33.1325
590 3E5H GNP 33.1325
591 1U8Z GDP 33.1325
592 2A9K GDP 33.1325
593 1YQT ADP 33.1325
594 2OM2 GDP 33.3333
595 1KAO GDP 33.5329
596 2C5L GTP 33.7349
597 1ZC3 GNP 33.7349
598 4K81 GTP 33.7349
599 2EFE GNH 33.7349
600 5E95 GDP 33.7349
601 5WDR GNP 34.3373
602 6BCB GSP 34.3373
603 6BCA GSP 34.3373
604 1CXZ GSP 34.3373
605 4D0N GDP 34.3373
606 6BC0 GSP 34.3373
607 3LXR GDP 34.3373
608 3CPJ GDP 34.3373
609 2G77 GDP 34.9398
610 1EK0 GNP 34.9398
611 1TU3 GNP 34.9398
612 2G77 AF3 34.9398
613 5Z2M GTP 34.9398
614 1G16 GDP 34.9398
615 3MJH GTP 35.5422
616 3RWO GDP 35.5422
617 5JCP GDP ALF 36.1446
618 4XSH GSP 36.1446
619 1TX4 ALF GDP 36.1446
620 1KY3 GDP 36.1446
621 5IRC GDP 36.1446
622 5HPY GDP 36.1446
623 1OW3 GDP 36.1446
624 1KMQ GNP 36.747
625 4XOI GTP 36.747
626 3QBT GNP 38.5542
627 3TNF GNP 38.5542
628 4LHW GNP 38.5542
629 3RAB GNP 39.1566
630 4DKX GDP 39.759
631 3BC1 GNP 39.759
632 5O74 GDP 40.9639
633 5LEF GTP 40.9639
634 3SFV GDP 40.9639
635 5SZH GNP 41.5663
636 3TKL GTP 41.5663
637 3NKV GNP 41.5663
638 3WYG GTP 42.7711
639 1LFD GNP 43.7126
640 2FH5 GTP 43.9759
641 3PQC GDP 43.9759
642 4DCT GDP 45.7831
Pocket No.: 2; Query (leader) PDB : 1O3Y; Ligand: GTP; Similar sites found with APoc: 18
This union binding pocket(no: 2) in the query (biounit: 1o3y.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 2ZX2 RAM None
2 2IL4 COA None
3 3W6X HZP 3.01205
4 5FJJ MAN 3.61446
5 1Q19 SSC 3.61446
6 4CR6 MAN 4.21687
7 5GLN XYP XYP XYP 4.81928
8 4AP9 1PS 4.81928
9 2JK0 ASP 5.42169
10 4U8P UDP 6.0241
11 3HQP FDP 6.0241
12 1QHG ATP 6.0241
13 4O48 ASP 6.62651
14 2F5X ASP 7.22892
15 6AIC AMP 7.22892
16 2XZ9 PYR 9.03614
17 2HYQ MAN MAN 10.6557
18 1QHH ATP 12.0482
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