Receptor
PDB id Resolution Class Description Source Keywords
1RSC 2.3 Å EC: 4.1.1.39 STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULO BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEE NZYME AND XYLULOSE BISPHOSPHATE SYNECHOCOCCUS ELONGATUS LYASE (CARBON-CARBON)
Ref.: STRUCTURE OF AN EFFECTOR-INDUCED INACTIVATED STATE RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE: TH COMPLEX BETWEEN ENZYME AND XYLULOSE 1,5-BISPHOSPHAT STRUCTURE V. 2 495 1994
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
XBP A:476;
B:476;
C:476;
D:476;
E:476;
F:476;
G:476;
H:476;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
310.09 C5 H12 O11 P2 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1RBL 2.2 Å EC: 4.1.1.39 STRUCTURE DETERMINATION AND REFINEMENT OF RIBULOSE 1,5 BISPH CARBOXYLASE(SLASH)OXYGENASE FROM SYNECHOCOCCUS PCC6301 SYNECHOCOCCUS ELONGATUS LYASE(CARBON-CARBON) LYASE
Ref.: STRUCTURE DETERMINATION AND REFINEMENT OF RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE FROM SYNECHO PCC6301. ACTA CRYSTALLOGR.,SECT.D V. 49 548 1993
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 1RSC - XBP C5 H12 O11 P2 C([C@H]([C....
2 1RBL - CAP C6 H14 O13 P2 C([C@H]([C....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 1RSC - XBP C5 H12 O11 P2 C([C@H]([C....
2 1RBL - CAP C6 H14 O13 P2 C([C@H]([C....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 1UWA - CAP C6 H14 O13 P2 C([C@H]([C....
2 1UW9 - CAP C6 H14 O13 P2 C([C@H]([C....
3 8RUC - CAP C6 H14 O13 P2 C([C@H]([C....
4 1UPM - CAP C6 H14 O13 P2 C([C@H]([C....
5 1AA1 - 3PG C3 H7 O7 P C([C@H](C(....
6 1RCO - XDP C5 H14 O12 P2 C([C@H]([C....
7 1RBO Kd = 0.19 pM CAP C6 H14 O13 P2 C([C@H]([C....
8 1RXO - RUB C5 H12 O11 P2 C([C@H]([C....
9 1UPP - CAP C6 H14 O13 P2 C([C@H]([C....
10 1RCX - RUB C5 H12 O11 P2 C([C@H]([C....
11 1UZD - CAP C6 H14 O13 P2 C([C@H]([C....
12 1UZH - CAP C6 H14 O13 P2 C([C@H]([C....
13 1RSC - XBP C5 H12 O11 P2 C([C@H]([C....
14 1RBL - CAP C6 H14 O13 P2 C([C@H]([C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: XBP; Similar ligands found: 32
No: Ligand ECFP6 Tc MDL keys Tc
1 RUB 1 1
2 XBP 1 1
3 5RP 0.657895 0.944444
4 HMS 0.657895 0.944444
5 5SP 0.657895 0.944444
6 P6T 0.634146 0.942857
7 P6F 0.634146 0.942857
8 2FP 0.634146 0.942857
9 DEZ 0.578947 0.888889
10 DER 0.578947 0.888889
11 DXP 0.564103 0.861111
12 MRU 0.55814 0.871795
13 RES 0.52381 0.666667
14 TG6 0.477273 0.916667
15 F6R 0.477273 0.916667
16 HG3 0.472222 0.828571
17 PA5 0.465116 0.888889
18 R10 0.465116 0.888889
19 I22 0.456522 0.916667
20 M2P 0.447368 0.914286
21 GOS 0.447368 0.914286
22 9C2 0.446809 0.653061
23 6PG 0.444444 0.888889
24 LG6 0.444444 0.888889
25 4TP 0.44186 0.744186
26 PAN 0.425532 0.666667
27 E4P 0.414634 0.911765
28 DX5 0.404762 0.888889
29 LXP 0.404762 0.888889
30 LX1 0.404762 0.810811
31 A5P 0.404762 0.888889
32 3PG 0.4 0.885714
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 1RBL; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1rbl.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback