-->
Receptor
PDB id Resolution Class Description Source Keywords
1SBZ 2 Å EC: 4.1.1.- CRYSTAL STRUCTURE OF DODECAMERIC FMN-DEPENDENT UBIX-LIKE DEC FROM ESCHERICHIA COLI O157:H7 ESCHERICHIA COLI FMN BINDING PAD1 UBIX MONTREAL-KINGSTON BACTERIAL STRUCTUGENOMICS INITIATIVE BSGI STRUCTURAL GENOMICS LYASE
Ref.: CRYSTAL STRUCTURE OF A DODECAMERIC FMN-DEPENDENT UB DECARBOXYLASE (PAD1) FROM ESCHERICHIA COLI O157: H7 PROTEIN SCI. V. 13 3006 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMN A:1401;
B:1402;
C:1403;
D:1404;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
456.344 C17 H21 N4 O9 P Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1SBZ 2 Å EC: 4.1.1.- CRYSTAL STRUCTURE OF DODECAMERIC FMN-DEPENDENT UBIX-LIKE DEC FROM ESCHERICHIA COLI O157:H7 ESCHERICHIA COLI FMN BINDING PAD1 UBIX MONTREAL-KINGSTON BACTERIAL STRUCTUGENOMICS INITIATIVE BSGI STRUCTURAL GENOMICS LYASE
Ref.: CRYSTAL STRUCTURE OF A DODECAMERIC FMN-DEPENDENT UB DECARBOXYLASE (PAD1) FROM ESCHERICHIA COLI O157: H7 PROTEIN SCI. V. 13 3006 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1SBZ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1SBZ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1SBZ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FMN; Similar ligands found: 15
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 RS3 0.571429 0.831169
4 FAD 0.543307 0.876543
5 FAS 0.543307 0.876543
6 FAE 0.539062 0.865854
7 LFN 0.475 0.643836
8 C3F 0.473684 0.74359
9 CF4 0.463918 0.734177
10 FAY 0.446043 0.864198
11 FNR 0.444444 0.909091
12 RFL 0.442857 0.845238
13 4LS 0.411215 0.875
14 1VY 0.406593 0.769231
15 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: 14
This union binding pocket(no: 1) in the query (biounit: 1sbz.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 1G63 FMN None
2 5XJ7 87O None
3 2WCU FUC 2.01342
4 1MVN FMN 2.03046
5 6EOA FMN 2.03046
6 1MVN PCO 2.03046
7 2F5X ASP 2.03046
8 5XQL C2E 3.04569
9 5ZI9 FLC 3.07692
10 3WIS FMN 3.5533
11 2HYQ MAN MAN 4.91803
12 4RW3 DKA 5.58376
13 4RF7 ARG 10.6599
14 1SJD NPG 30.9645
Pocket No.: 2; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1sbz.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1sbz.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: 14
This union binding pocket(no: 4) in the query (biounit: 1sbz.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 2H92 C5P None
2 3K0T BGC 2.0979
3 4WXJ GLU 2.53807
4 1Q9I TEO 3.5533
5 1Q9I FAD 3.5533
6 4C01 QY9 3.5533
7 4YG6 GAL NAG 4.29448
8 1ONI BEZ 4.34783
9 2LBD REA 4.56853
10 2XDQ MGX 5.07614
11 2BO4 FLC 5.58376
12 5E58 CPZ 7.1066
13 4J6W C 9.7561
14 2ZFZ ARG 13.9241
Pocket No.: 5; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1sbz.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1sbz.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: 2
This union binding pocket(no: 7) in the query (biounit: 1sbz.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 4BC5 5FX 4.56853
2 5IFK HPA 5.07614
Pocket No.: 8; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1sbz.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 1sbz.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: 1
This union binding pocket(no: 10) in the query (biounit: 1sbz.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 6CB2 OLC 3.04569
Pocket No.: 11; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 1sbz.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 1SBZ; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 1sbz.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback