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Receptor
PDB id Resolution Class Description Source Keywords
1SES 2.5 Å EC: 6.1.1.11 CRYSTAL STRUCTURES AT 2.5 ANGSTROMS RESOLUTION OF SERYL-TRNA SYNTHETASE COMPLEXED WITH TWO DIFFERENT ANALOGUES OF SERYL- THERMUS THERMOPHILUS LIGASE SYNTHETASE
Ref.: CRYSTAL STRUCTURES AT 2.5 ANGSTROM RESOLUTION OF SE SYNTHETASE COMPLEXED WITH TWO ANALOGS OF SERYL ADEN SCIENCE V. 263 1432 1994
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AHX A:422;
Valid;
none;
submit data
449.313 C13 H20 N7 O9 P c1nc(...
AMP B:423;
Valid;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1SES 2.5 Å EC: 6.1.1.11 CRYSTAL STRUCTURES AT 2.5 ANGSTROMS RESOLUTION OF SERYL-TRNA SYNTHETASE COMPLEXED WITH TWO DIFFERENT ANALOGUES OF SERYL- THERMUS THERMOPHILUS LIGASE SYNTHETASE
Ref.: CRYSTAL STRUCTURES AT 2.5 ANGSTROM RESOLUTION OF SE SYNTHETASE COMPLEXED WITH TWO ANALOGS OF SERYL ADEN SCIENCE V. 263 1432 1994
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1SES - AMP C10 H14 N5 O7 P c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1SES - AMP C10 H14 N5 O7 P c1nc(c2c(n....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1SES - AMP C10 H14 N5 O7 P c1nc(c2c(n....
2 3ERR - AMP C10 H14 N5 O7 P c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AHX; Similar ligands found: 320
No: Ligand ECFP6 Tc MDL keys Tc
1 AHX 1 1
2 XAH 0.815217 0.9375
3 SRP 0.722222 0.935065
4 A2D 0.690476 0.896104
5 CA0 0.689655 0.897436
6 5AL 0.681319 0.884615
7 AN2 0.678161 0.909091
8 BA3 0.674419 0.896104
9 B4P 0.666667 0.896104
10 AP5 0.666667 0.896104
11 ADP 0.666667 0.896104
12 AT4 0.659091 0.8625
13 AMO 0.65625 0.935065
14 AMP 0.654762 0.87013
15 A 0.654762 0.87013
16 ADX 0.651685 0.811765
17 M33 0.651685 0.884615
18 NB8 0.646465 0.974026
19 8QN 0.645833 0.884615
20 ATP 0.644444 0.896104
21 50T 0.644444 0.860759
22 HEJ 0.644444 0.896104
23 ACP 0.644444 0.897436
24 AQP 0.637363 0.896104
25 5FA 0.637363 0.896104
26 AR6 0.637363 0.896104
27 PRX 0.637363 0.82716
28 APR 0.637363 0.896104
29 LAD 0.636364 0.888889
30 ANP 0.634409 0.897436
31 DLL 0.632653 0.884615
32 ABM 0.632184 0.848101
33 SSA 0.631579 0.848837
34 AGS 0.630435 0.851852
35 AD9 0.630435 0.873418
36 SAP 0.630435 0.851852
37 ME8 0.63 0.845238
38 PAJ 0.622449 0.865854
39 4AD 0.622449 0.923077
40 ATF 0.621053 0.8625
41 AP2 0.617977 0.886076
42 A12 0.617977 0.886076
43 ACQ 0.617021 0.897436
44 00A 0.616162 0.841463
45 AU1 0.615385 0.897436
46 TXA 0.613861 0.886076
47 OOB 0.612245 0.884615
48 YAP 0.61165 0.898734
49 FA5 0.61165 0.910256
50 SRA 0.609195 0.82716
51 WAQ 0.60396 0.864198
52 B5V 0.60396 0.8625
53 PTJ 0.598039 0.831325
54 FYA 0.598039 0.884615
55 6YZ 0.597938 0.897436
56 9ZD 0.59596 0.864198
57 9ZA 0.59596 0.864198
58 OAD 0.594059 0.897436
59 3UK 0.594059 0.873418
60 A1R 0.59 0.911392
61 PR8 0.588235 0.878049
62 YLP 0.587156 0.847059
63 SON 0.586957 0.886076
64 5CA 0.585859 0.848837
65 A22 0.585859 0.884615
66 APC 0.585106 0.886076
67 GAP 0.583333 0.873418
68 T99 0.583333 0.8625
69 TAT 0.583333 0.8625
70 1ZZ 0.582524 0.802326
71 3OD 0.582524 0.897436
72 B5M 0.580952 0.851852
73 25A 0.58 0.871795
74 5SV 0.58 0.788235
75 RBY 0.578947 0.886076
76 ADV 0.578947 0.886076
77 9X8 0.578431 0.851852
78 TYM 0.576577 0.910256
79 A3R 0.574257 0.911392
80 ADQ 0.574257 0.897436
81 A5A 0.571429 0.793103
82 YLB 0.571429 0.847059
83 YLC 0.571429 0.86747
84 9SN 0.571429 0.831325
85 DAL AMP 0.57 0.860759
86 53H 0.57 0.766667
87 TSB 0.57 0.804598
88 BIS 0.567308 0.841463
89 B5Y 0.566038 0.851852
90 ADP PO3 0.5625 0.87013
91 54H 0.56 0.775281
92 52H 0.56 0.766667
93 VMS 0.56 0.775281
94 7MD 0.559633 0.91358
95 4UU 0.559633 0.851852
96 DSZ 0.558824 0.827586
97 LSS 0.558824 0.788889
98 48N 0.558559 0.876543
99 YLA 0.556522 0.847059
100 4UV 0.555556 0.851852
101 DQV 0.554545 0.909091
102 MAP 0.554455 0.875
103 AYB 0.551724 0.837209
104 TXE 0.548673 0.864198
105 IOT 0.547826 0.837209
106 25L 0.54717 0.884615
107 F2R 0.547009 0.869048
108 AFH 0.545455 0.865854
109 GA7 0.545455 0.886076
110 LMS 0.544444 0.790698
111 KAA 0.542857 0.8
112 GSU 0.542857 0.806818
113 G5A 0.540816 0.827586
114 ADP ALF 0.54 0.807229
115 ALF ADP 0.54 0.807229
116 4UW 0.539823 0.821429
117 TXD 0.539823 0.864198
118 A3S 0.536842 0.842105
119 LAQ 0.535714 0.802326
120 VO4 ADP 0.534653 0.860759
121 ADP VO4 0.534653 0.860759
122 YSA 0.53211 0.806818
123 ARG AMP 0.531532 0.835294
124 COD 0.529412 0.83908
125 NSS 0.528846 0.827586
126 AMP DBH 0.527273 0.82716
127 GTA 0.526786 0.823529
128 DND 0.526316 0.886076
129 NAX 0.526316 0.878049
130 6V0 0.526316 0.853659
131 NXX 0.526316 0.886076
132 NAI 0.526316 0.864198
133 5AS 0.526316 0.766667
134 5X8 0.525773 0.772152
135 NVA LMS 0.52381 0.78022
136 G3A 0.522523 0.853659
137 OMR 0.521739 0.813953
138 80F 0.520661 0.847059
139 YLY 0.520325 0.837209
140 N0B 0.52 0.847059
141 LEU LMS 0.518868 0.78022
142 MYR AMP 0.518519 0.781609
143 G5P 0.517857 0.853659
144 AOC 0.516129 0.759494
145 TYR AMP 0.513514 0.875
146 UP5 0.513043 0.875
147 CNA 0.512605 0.910256
148 BT5 0.512397 0.816092
149 XYA 0.511905 0.802632
150 ADN 0.511905 0.802632
151 RAB 0.511905 0.802632
152 5CD 0.511628 0.74359
153 JB6 0.509259 0.841463
154 DTA 0.505618 0.728395
155 3DH 0.505495 0.716049
156 2A5 0.50505 0.873418
157 ADP BMA 0.504673 0.873418
158 4TC 0.504274 0.876543
159 AP0 0.504274 0.831325
160 7MC 0.504274 0.891566
161 A4P 0.5 0.827586
162 TAD 0.5 0.865854
163 5N5 0.5 0.779221
164 SA8 0.5 0.717647
165 A A 0.5 0.848101
166 AF3 ADP 3PG 0.495726 0.821429
167 WSA 0.495726 0.816092
168 8PZ 0.495495 0.827586
169 8X1 0.495238 0.8
170 SAH 0.49505 0.753086
171 SFG 0.494949 0.759494
172 J7C 0.494737 0.756098
173 7D5 0.494505 0.8125
174 EP4 0.494382 0.698795
175 A4D 0.494253 0.779221
176 NAD 0.491803 0.884615
177 BTX 0.491803 0.825581
178 139 0.491667 0.878049
179 ADJ 0.491667 0.813953
180 T5A 0.491667 0.847059
181 UPA 0.491525 0.8875
182 7D3 0.489583 0.8375
183 6RE 0.489362 0.746988
184 P5A 0.486239 0.791209
185 PAP 0.485149 0.883117
186 ATR 0.485149 0.87013
187 7D4 0.484848 0.8375
188 A3P 0.484536 0.87013
189 A3D 0.483871 0.873418
190 MTA 0.483516 0.716049
191 AHZ 0.482759 0.781609
192 ATP A A A 0.482143 0.858974
193 SAI 0.480392 0.743902
194 LPA AMP 0.478632 0.781609
195 NAQ 0.476562 0.831325
196 S7M 0.47619 0.701149
197 SMM 0.47619 0.696629
198 DZD 0.475806 0.865854
199 SAM 0.475728 0.701149
200 M2T 0.472527 0.682353
201 M24 0.472441 0.855422
202 0UM 0.472222 0.729412
203 A2R 0.471698 0.884615
204 PPS 0.471154 0.790698
205 EEM 0.471154 0.701149
206 ITT 0.47 0.846154
207 A2P 0.469388 0.857143
208 A3G 0.46875 0.831169
209 NAE 0.46875 0.851852
210 9K8 0.468468 0.6875
211 3AM 0.468085 0.857143
212 FB0 0.466667 0.811111
213 2SA 0.466667 0.910256
214 AR6 AR6 0.465517 0.848101
215 A3T 0.465347 0.805195
216 A3N 0.463918 0.75
217 6IA 0.461538 0.821429
218 ZID 0.461538 0.873418
219 A7D 0.46 0.7625
220 GJV 0.459184 0.738095
221 6AD 0.457143 0.821429
222 NAJ PZO 0.456693 0.831325
223 8Q2 0.454545 0.8
224 EAD 0.454545 0.855422
225 NAJ PYZ 0.453846 0.793103
226 DSH 0.453608 0.73494
227 HFD 0.451923 0.851852
228 NDE 0.451852 0.8625
229 NA7 0.45045 0.886076
230 IMO 0.44898 0.833333
231 ZAS 0.447917 0.753086
232 V3L 0.447619 0.871795
233 3NZ 0.446429 0.8125
234 AMP NAD 0.444444 0.860759
235 S4M 0.444444 0.677778
236 A5D 0.442308 0.728395
237 2AM 0.442105 0.87013
238 ARU 0.441441 0.77907
239 62X 0.441441 0.677778
240 P1H 0.441176 0.835294
241 D3Y 0.440367 0.820513
242 MAO 0.44 0.809524
243 AV2 0.439252 0.825
244 NEC 0.438776 0.734177
245 6C6 0.438095 0.839506
246 VRT 0.438095 0.8
247 FNK 0.4375 0.791209
248 K15 0.4375 0.693182
249 4YB 0.436975 0.788889
250 2VA 0.436893 0.78481
251 AVV 0.436364 0.853659
252 NDC 0.434783 0.831325
253 649 0.434426 0.771739
254 4TA 0.433071 0.813953
255 7C5 0.432203 0.759036
256 AAT 0.429907 0.717647
257 SXZ 0.429825 0.72093
258 SFD 0.429577 0.742268
259 OVE 0.428571 0.8375
260 FDA 0.428571 0.797753
261 NVA 2AD 0.428571 0.790123
262 MHZ 0.427184 0.727273
263 KB1 0.426087 0.709302
264 6FA 0.425532 0.825581
265 NJP 0.425197 0.875
266 SO8 0.424528 0.775
267 GEK 0.423423 0.746988
268 6K6 0.423423 0.858974
269 U A 0.423077 0.841463
270 0WD 0.421875 0.853659
271 G A A A 0.421875 0.831325
272 3AT 0.420561 0.896104
273 5AD 0.420455 0.688312
274 ETB 0.419847 0.83908
275 DCA 0.419847 0.829545
276 FAS 0.41958 0.835294
277 FAD 0.41958 0.835294
278 Y3J 0.417582 0.670886
279 TXP 0.417323 0.853659
280 NZQ 0.417323 0.865854
281 C2R 0.416667 0.835443
282 AMZ 0.416667 0.846154
283 7D7 0.41573 0.708861
284 FAY 0.414966 0.845238
285 Z5A 0.414815 0.786517
286 CAO 0.414815 0.802198
287 30N 0.414815 0.760417
288 COS 0.414815 0.811111
289 P5F 0.414474 0.788889
290 GGZ 0.414414 0.767442
291 ODP 0.414062 0.843373
292 0T1 0.413534 0.829545
293 COA 0.413534 0.829545
294 PGS 0.413462 0.797619
295 KH3 0.413223 0.704545
296 A6D 0.412281 0.732558
297 A A A 0.412281 0.860759
298 RFL 0.412162 0.806818
299 71V 0.411765 0.819277
300 A G 0.410853 0.819277
301 S8M 0.410714 0.768293
302 9JJ 0.410596 0.823529
303 DAT 0.409524 0.860759
304 NPW 0.409449 0.86747
305 NDP 0.409449 0.853659
306 F2N 0.409091 0.8
307 FCX 0.408759 0.802198
308 62F 0.408163 0.845238
309 NIA 0.408163 0.807229
310 U A G G 0.407692 0.819277
311 DTP 0.407407 0.860759
312 AMX 0.404412 0.83908
313 7DD 0.403846 0.883117
314 SLU 0.401515 0.758242
315 CMX 0.40146 0.829545
316 SCO 0.40146 0.829545
317 PO4 PO4 A A A A PO4 0.4 0.833333
318 COK 0.4 0.811111
319 XNP 0.4 0.833333
320 MCD 0.4 0.811111
Ligand no: 2; Ligand: AMP; Similar ligands found: 395
No: Ligand ECFP6 Tc MDL keys Tc
1 A 1 1
2 AMP 1 1
3 A2D 0.833333 0.943662
4 ABM 0.833333 0.943662
5 ADP 0.823529 0.971429
6 A12 0.808824 0.931507
7 AP2 0.808824 0.931507
8 BA3 0.808824 0.943662
9 SRA 0.80303 0.944444
10 AP5 0.797101 0.943662
11 B4P 0.797101 0.943662
12 HEJ 0.788732 0.971429
13 ATP 0.788732 0.971429
14 AT4 0.785714 0.931507
15 AN2 0.785714 0.957747
16 5FA 0.777778 0.971429
17 AQP 0.777778 0.971429
18 APC 0.777778 0.931507
19 CA0 0.774648 0.917808
20 M33 0.774648 0.930556
21 AU1 0.774648 0.944444
22 ADX 0.774648 0.848101
23 ACP 0.763889 0.944444
24 50T 0.763889 0.957747
25 25A 0.75641 0.971429
26 AR6 0.753425 0.943662
27 PRX 0.753425 0.917808
28 APR 0.753425 0.943662
29 ACQ 0.746667 0.944444
30 T99 0.746667 0.931507
31 TAT 0.746667 0.931507
32 SAP 0.743243 0.918919
33 AD9 0.743243 0.944444
34 AGS 0.743243 0.918919
35 RBY 0.743243 0.905405
36 ADV 0.743243 0.905405
37 ANP 0.723684 0.944444
38 ADP PO3 0.72 0.942857
39 6YZ 0.717949 0.944444
40 5AL 0.714286 0.930556
41 SON 0.712329 0.931507
42 LMS 0.710145 0.825
43 RAB 0.709677 0.842857
44 XYA 0.709677 0.842857
45 ADN 0.709677 0.842857
46 ATF 0.705128 0.931507
47 GAP 0.701299 0.891892
48 A22 0.7 0.957747
49 SRP 0.696203 0.905405
50 7D5 0.691176 0.902778
51 A3P 0.684932 0.971014
52 A2P 0.684932 0.956522
53 ADP ALF 0.683544 0.868421
54 ALF ADP 0.683544 0.868421
55 ADQ 0.682927 0.917808
56 MAP 0.679012 0.918919
57 ADP VO4 0.675 0.930556
58 VO4 ADP 0.675 0.930556
59 OOB 0.670732 0.930556
60 9ZA 0.670732 0.906667
61 8QN 0.670732 0.930556
62 5SV 0.670732 0.87013
63 9ZD 0.670732 0.906667
64 PTJ 0.670588 0.894737
65 AOC 0.666667 0.84507
66 PAJ 0.662651 0.858974
67 4AD 0.662651 0.893333
68 A3R 0.662651 0.881579
69 A1R 0.662651 0.881579
70 AMO 0.662651 0.905405
71 5N5 0.661538 0.816901
72 DAL AMP 0.658537 0.90411
73 IMO 0.657534 0.928571
74 AHX 0.654762 0.87013
75 00A 0.654762 0.881579
76 DLL 0.654762 0.930556
77 5AS 0.653333 0.776471
78 A4D 0.651515 0.816901
79 5CD 0.651515 0.828571
80 9X8 0.647059 0.893333
81 OAD 0.647059 0.917808
82 3UK 0.647059 0.917808
83 ADP BMA 0.647059 0.891892
84 25L 0.643678 0.957747
85 PR8 0.639535 0.848101
86 WAQ 0.639535 0.881579
87 LAD 0.639535 0.858974
88 B5V 0.639535 0.905405
89 DTA 0.637681 0.808219
90 V3L 0.6375 0.971429
91 3DH 0.633803 0.794521
92 BIS 0.632184 0.906667
93 ME8 0.632184 0.8375
94 3OD 0.632184 0.917808
95 FYA 0.632184 0.930556
96 NB8 0.632184 0.87013
97 1ZZ 0.632184 0.8375
98 TXA 0.632184 0.905405
99 MTA 0.628571 0.794521
100 3AM 0.625 0.956522
101 EP4 0.623188 0.773333
102 A A 0.62069 0.971429
103 9SN 0.617977 0.87013
104 M2T 0.614286 0.753247
105 JB6 0.613636 0.881579
106 YAP 0.611111 0.893333
107 B5Y 0.611111 0.893333
108 FA5 0.611111 0.905405
109 B5M 0.611111 0.893333
110 MYR AMP 0.606742 0.814815
111 G5A 0.604938 0.776471
112 XAH 0.604396 0.8375
113 4UV 0.597826 0.893333
114 71V 0.597403 0.906667
115 ATP A A A 0.593407 0.929577
116 PAP 0.592593 0.957143
117 G3A 0.591398 0.894737
118 2AM 0.589041 0.942857
119 5X8 0.5875 0.783784
120 6RE 0.586667 0.779221
121 6C6 0.585366 0.905405
122 AFH 0.585106 0.858974
123 4UU 0.585106 0.893333
124 G5P 0.585106 0.894737
125 GA7 0.585106 0.905405
126 7D3 0.584416 0.878378
127 A5A 0.583333 0.804878
128 TSB 0.581395 0.795181
129 AMP DBH 0.580645 0.891892
130 TYR AMP 0.580645 0.868421
131 2A5 0.580247 0.891892
132 DQV 0.578947 0.930556
133 DSH 0.578947 0.74359
134 GTA 0.578947 0.860759
135 TAD 0.578947 0.858974
136 6IA 0.578313 0.858974
137 SSA 0.576471 0.776471
138 AMZ 0.575342 0.888889
139 C2R 0.575342 0.876712
140 PGS 0.575 0.857143
141 7D4 0.575 0.878378
142 ZAS 0.573333 0.786667
143 ATR 0.573171 0.942857
144 LAQ 0.572917 0.8375
145 AAM 0.571429 1
146 J7C 0.571429 0.789474
147 A3N 0.571429 0.783784
148 PPS 0.571429 0.848101
149 AIR 0.571429 0.927536
150 52H 0.569767 0.776471
151 54H 0.569767 0.785714
152 VMS 0.569767 0.785714
153 AR6 AR6 0.568421 0.916667
154 ARG AMP 0.568421 0.82716
155 7MD 0.568421 0.8375
156 YLP 0.56701 0.817073
157 48N 0.56701 0.87013
158 OVE 0.565789 0.90411
159 UPA 0.565657 0.881579
160 2SA 0.564706 0.905405
161 S4M 0.564103 0.682353
162 5CA 0.563218 0.776471
163 53H 0.563218 0.776471
164 8X1 0.563218 0.75
165 UP5 0.561224 0.893333
166 NAI 0.561224 0.881579
167 6V0 0.561224 0.87013
168 NAX 0.561224 0.848101
169 4UW 0.561224 0.858974
170 DND 0.561224 0.905405
171 TXD 0.561224 0.881579
172 NXX 0.561224 0.905405
173 NIA 0.56 0.820513
174 D5M 0.558442 0.902778
175 DA 0.558442 0.902778
176 MAO 0.556962 0.777778
177 AHZ 0.556701 0.814815
178 OMR 0.555556 0.82716
179 ITT 0.555556 0.915493
180 TYM 0.555556 0.905405
181 TXE 0.555556 0.881579
182 5AD 0.552239 0.768116
183 A2R 0.551724 0.957747
184 LPA AMP 0.55102 0.814815
185 DSZ 0.550562 0.776471
186 NSS 0.550562 0.776471
187 LSS 0.550562 0.758621
188 AP0 0.55 0.87013
189 YLC 0.55 0.8375
190 4TC 0.55 0.87013
191 YLB 0.55 0.817073
192 P5A 0.549451 0.741573
193 139 0.54902 0.848101
194 A4P 0.544554 0.819277
195 NVA LMS 0.544444 0.75
196 GJV 0.544304 0.769231
197 7D7 0.544118 0.763889
198 9K8 0.543478 0.711111
199 A7D 0.54321 0.797297
200 AF3 ADP 3PG 0.54 0.835443
201 6K6 0.539326 0.957143
202 IOT 0.539216 0.829268
203 A3G 0.538462 0.797297
204 LEU LMS 0.538462 0.75
205 A5D 0.535714 0.808219
206 7MC 0.534653 0.817073
207 T5A 0.533981 0.817073
208 ADJ 0.533981 0.82716
209 YLA 0.533981 0.817073
210 GSU 0.532609 0.776471
211 KAA 0.532609 0.75
212 7RA 0.531646 0.985507
213 SFG 0.53012 0.77027
214 SAH 0.529412 0.763158
215 HFD 0.529412 0.918919
216 AYB 0.528846 0.807229
217 CNA 0.528846 0.905405
218 N6P 0.527473 0.942029
219 8BR 0.525 0.931507
220 F2R 0.52381 0.839506
221 80F 0.523364 0.817073
222 Y3J 0.521127 0.746479
223 YSA 0.520833 0.776471
224 7RP 0.518987 0.955882
225 BTX 0.518868 0.839506
226 NAD 0.518868 0.930556
227 COD 0.518868 0.788235
228 G A A A 0.518868 0.87013
229 MHZ 0.518072 0.714286
230 SA8 0.517647 0.725
231 6AD 0.517241 0.883117
232 DZD 0.514019 0.858974
233 BT5 0.514019 0.829268
234 RMB 0.5125 0.898551
235 SAI 0.511628 0.753247
236 AV2 0.511364 0.890411
237 8PZ 0.510417 0.776471
238 A3D 0.509259 0.917808
239 A3S 0.506024 0.808219
240 3AT 0.505747 0.943662
241 SAM 0.505747 0.707317
242 SMM 0.505618 0.702381
243 NA7 0.505376 0.931507
244 4TA 0.504673 0.804878
245 AMP NAD 0.504673 0.90411
246 EEM 0.5 0.707317
247 G 0.5 0.905405
248 NEC 0.5 0.743243
249 5GP 0.5 0.905405
250 AAT 0.5 0.725
251 YLY 0.495495 0.807229
252 M24 0.495495 0.848101
253 7C5 0.494949 0.815789
254 DAT 0.494118 0.878378
255 A3T 0.494118 0.819444
256 P2P 0.493827 0.928571
257 FAI 0.493827 0.888889
258 1RB 0.493671 0.911765
259 NAE 0.491071 0.893333
260 U A 0.490909 0.906667
261 NAJ PZO 0.490909 0.846154
262 A G 0.490741 0.881579
263 TM1 0.489583 0.771084
264 A A A 0.489362 0.90411
265 A6D 0.489362 0.740741
266 PO4 PO4 A A A A PO4 0.489362 0.901408
267 S7M 0.488889 0.707317
268 DTP 0.488636 0.878378
269 RBZ 0.4875 0.873239
270 101 0.4875 0.902778
271 EAD 0.486957 0.848101
272 NAQ 0.486726 0.87013
273 U A G G 0.486239 0.881579
274 4YB 0.485149 0.758621
275 NDE 0.483051 0.931507
276 ZID 0.482456 0.917808
277 N0B 0.482456 0.817073
278 WSA 0.480769 0.785714
279 RGT 0.479592 0.931507
280 ARU 0.478723 0.835443
281 GGZ 0.478261 0.8
282 JLN 0.47561 0.863014
283 ANZ 0.475248 0.820513
284 QQY 0.475 0.837838
285 ACK 0.475 0.885714
286 NAJ PYZ 0.473684 0.804878
287 S8M 0.473118 0.779221
288 GEK 0.473118 0.734177
289 AVV 0.473118 0.87013
290 3AD 0.472973 0.828571
291 A U 0.471698 0.868421
292 P1H 0.470588 0.82716
293 0UM 0.468085 0.716049
294 RVP 0.467532 0.847222
295 649 0.466667 0.741573
296 Z5A 0.465517 0.776471
297 PMO 0.464286 0.873239
298 SXZ 0.463918 0.707317
299 62X 0.463158 0.682353
300 QQX 0.4625 0.826667
301 8Q2 0.462264 0.75
302 2VA 0.45977 0.797297
303 IMP 0.458824 0.90411
304 K15 0.458333 0.698795
305 CC5 0.458333 0.84058
306 AS 0.457831 0.855263
307 DDS 0.455556 0.851351
308 V1N 0.455446 0.943662
309 NJP 0.454545 0.918919
310 7DD 0.453488 0.957143
311 93A 0.453488 0.804878
312 G7M 0.453488 0.87013
313 3L1 0.453333 0.77027
314 3D1 0.453333 0.77027
315 EO7 0.452381 0.785714
316 NDC 0.45082 0.87013
317 FB0 0.45082 0.781609
318 0WD 0.45045 0.894737
319 NVA 2AD 0.449438 0.75641
320 26A 0.447368 0.76
321 2FA 0.447368 0.810811
322 2BA 0.447059 0.914286
323 CMP 0.447059 0.927536
324 D3Y 0.446809 0.786667
325 KB1 0.444444 0.716049
326 APU 0.444444 0.893333
327 VRT 0.444444 0.766234
328 SO8 0.444444 0.786667
329 FDA 0.443548 0.809524
330 PUA 0.443478 0.858974
331 ODP 0.441441 0.883117
332 6FA 0.44 0.817073
333 103 0.439024 0.861111
334 RP1 0.439024 0.864865
335 SP1 0.439024 0.864865
336 3NZ 0.438776 0.779221
337 A C A C 0.438596 0.846154
338 7DT 0.438202 0.957143
339 NDP 0.436364 0.894737
340 NPW 0.436364 0.860759
341 MTP 0.434211 0.727273
342 FAS 0.433071 0.82716
343 SFD 0.433071 0.712766
344 FAD 0.433071 0.82716
345 IRN 0.432432 0.867647
346 ZZB 0.432432 0.792683
347 TXP 0.432432 0.894737
348 NZQ 0.432432 0.883117
349 62F 0.430769 0.8375
350 FNK 0.430769 0.781609
351 128 0.429907 0.752941
352 1DA 0.428571 0.842857
353 6MD 0.428571 0.805556
354 PAX 0.428571 0.82716
355 SLU 0.426087 0.767442
356 XNP 0.424779 0.848101
357 12D 0.424528 0.761905
358 5F1 0.423077 0.72973
359 ETB 0.422414 0.809524
360 DCA 0.422414 0.8
361 F0P 0.422018 0.725
362 WMP 0.421053 0.864865
363 GUO 0.421053 0.864865
364 FAY 0.416667 0.8375
365 38Y 0.415929 0.804878
366 5J9 0.415842 0.728395
367 COA 0.415254 0.8
368 0T1 0.415254 0.8
369 KH3 0.415094 0.690476
370 U A C C 0.413793 0.857143
371 N01 0.413793 0.90411
372 FMP 0.413793 0.871429
373 RFL 0.413534 0.797619
374 NMN AMP PO4 0.412281 0.868421
375 GP2 0.408602 0.858974
376 GDP 0.408602 0.893333
377 NAP 0.408333 0.944444
378 NOC 0.407895 0.760563
379 2ER 0.405941 0.831169
380 1PR 0.405941 0.820513
381 P5F 0.405797 0.8
382 CAO 0.404959 0.772727
383 TAP 0.404959 0.906667
384 30N 0.404959 0.731183
385 COS 0.404959 0.781609
386 AMX 0.404959 0.809524
387 XMP 0.402299 0.891892
388 G2P 0.402062 0.858974
389 APC G U 0.401709 0.833333
390 U A A U 0.401639 0.906667
391 CMX 0.401639 0.8
392 NA0 0.401639 0.931507
393 SCO 0.401639 0.8
394 9JJ 0.40146 0.8375
395 F2N 0.4 0.790698
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1SES; Ligand: AMP; Similar sites found with APoc: 70
This union binding pocket(no: 1) in the query (biounit: 1ses.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 2WOX NDP 1.42518
2 1X54 4AD 1.66271
3 4I3V NAD 1.66271
4 5L13 6ZE 1.66271
5 1E1O LYS 1.90024
6 1T90 NAD 1.90024
7 2XGT NSS 2.13777
8 1G51 AMO 2.13777
9 3EFV NAD 2.13777
10 3TEG DAH 2.16867
11 5IUW NAD 2.3753
12 5IUW IAC 2.3753
13 3BJU ATP 2.61283
14 2RKV COA 2.61283
15 1O9J NAD 2.85036
16 2QE0 NAP 2.85036
17 4PZ2 NAD 3.32542
18 3NEM AMO 3.56295
19 3NEM ATP 3.56295
20 4XQC NAD 3.56295
21 2JBM SRT 3.67893
22 3MF2 AMP 3.75723
23 4YDQ HFG 3.80048
24 4YDQ ANP 3.80048
25 12AS AMP 3.93939
26 4CS4 AXZ 4.0146
27 4CS4 ANP 4.0146
28 3SUD SUE 4.4335
29 5T2U NAP 4.43548
30 1B7Y FYA 4.57143
31 3G1Z AMP 4.60123
32 5V59 8X1 4.98812
33 3VZ3 NAP 4.98812
34 3VZ3 SSN 4.98812
35 3E9I XAH 5.22565
36 3HXU A5A 5.46318
37 1XVB BHL 5.46318
38 5ZCT ANP 5.55556
39 4I8P NAD 5.93824
40 3IWK NAD 5.93824
41 6B5G NAD 6.08519
42 2ZTG A5A 6.4133
43 2CJF RP4 7.00637
44 2W83 GTP 7.79221
45 4H2W 5GP 7.83848
46 4H2W AMP 7.83848
47 4H2X G5A 7.83848
48 3QXV MTX 7.93651
49 4GOJ GNP 7.93651
50 4KAX GTP 8.07453
51 3A5Y KAA 8.11594
52 1UPT GTP 8.33333
53 3REU ATP 8.5034
54 3RHJ NAP 8.7886
55 4HWS 1B3 9.97567
56 2J3M ATP 9.97625
57 2J3M PRI 9.97625
58 2I4O ATP 10.4513
59 3UH0 TSB 12.3515
60 4H2V AMP 12.7273
61 5APG EEM 14.0541
62 3IAL PR8 14.7268
63 1O3Y GTP 15.6627
64 2J59 GTP 15.6627
65 5XIO ANP 15.9145
66 3A5Z KAA 17.801
67 5VAD 91Y 20.19
68 5XIJ ANP 24.7031
69 5XIJ 873 24.7031
70 1J2J GTP 44.4444
Pocket No.: 2; Query (leader) PDB : 1SES; Ligand: AHX; Similar sites found with APoc: 59
This union binding pocket(no: 2) in the query (biounit: 1ses.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 2WOX NDP 1.42518
2 1X54 4AD 1.66271
3 3T4L ZEA 1.85185
4 1E1O LYS 1.90024
5 1QHO MAL 1.90024
6 1ORR NAD 2.01729
7 4IAW LIZ 2.12766
8 2XGT NSS 2.13777
9 1G51 AMO 2.13777
10 1YFS ALA 2.13777
11 3TEG DAH 2.16867
12 3BJU ATP 2.61283
13 3A7R LAQ 2.96736
14 5TH5 MET 3.04183
15 3NEM AMO 3.56295
16 3NEM ATP 3.56295
17 3MF2 AMP 3.75723
18 4YDQ HFG 3.80048
19 4YDQ ANP 3.80048
20 4J25 OGA 3.93013
21 12AS AMP 3.93939
22 4CS4 ANP 4.0146
23 4CS4 AXZ 4.0146
24 2JKG PRO PRO PRO PRO PRO PRO PRO PRO 4.46927
25 1B7Y FYA 4.57143
26 6BU0 IHP 4.58015
27 3G1Z AMP 4.60123
28 4P8K FAD 4.79167
29 4P8K 38C 4.79167
30 5V59 8X1 4.98812
31 3HRD FAD 5
32 3E9I XAH 5.22565
33 3HXU A5A 5.46318
34 3MBC NAP 5.46318
35 2ART LPA AMP 5.72519
36 2E5A LAQ 6.05187
37 1M5W DXP 6.17284
38 2ZTG A5A 6.4133
39 2OVW CBI 6.81265
40 4H2X G5A 7.83848
41 4H2W AMP 7.83848
42 4H2W 5GP 7.83848
43 3A5Y KAA 8.11594
44 3REU ATP 8.5034
45 4RGA 3PV 8.90585
46 4HWS 1B3 9.97567
47 2J3M ATP 9.97625
48 2J3M PRI 9.97625
49 2I4O ATP 10.4513
50 3UH0 TSB 12.3515
51 4H2V AMP 12.7273
52 1JOC ITP 12.8
53 3IAL PR8 14.7268
54 5XIO ANP 15.9145
55 3A5Z KAA 17.801
56 5VAD 91Y 20.19
57 5XIJ ANP 24.7031
58 5XIJ 873 24.7031
59 4HWT 1B2 26.1501
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