Receptor
PDB id Resolution Class Description Source Keywords
1UKV 1.5 Å NON-ENZYME: TRANSPORT STRUCTURE OF RABGDP-DISSOCIATION INHIBITOR IN COMPLEX WITH PRENYLATED YPT1 GTPASE SACCHAROMYCES CEREVISIAE GTPASE HYDROLASE GDP DISSOCIATION INHIBITOR VESICULAR TRANSPORT PROTEIN TRANSPORT
Ref.: STRUCTURE OF RAB GDP-DISSOCIATION INHIBITOR IN COMPLEX WITH PRENYLATED YPT1 GTPASE SCIENCE V. 302 646 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP Y:1207;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
GER Y:1206;
Part of Protein;
none;
submit data
274.484 C20 H34 CC=C(...
MG Y:1208;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BCG 1.48 Å NON-ENZYME: TRANSPORT STRUCTURE OF DOUBLY PRENYLATED YPT1:GDI COMPLEX SACCHAROMYCES CEREVISIAE RABGTPASE GERANYLGERANYLATION VESICULAR TRANSPORT PROTEIN TRANSPORT
Ref.: STRUCTURE OF DOUBLY PRENYLATED YPT1:GDI COMPLEX AND THE MECHANISM OF GDI-MEDIATED RAB RECYCLING EMBO J. V. 25 13 2006
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 199 families.
1 1UKV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2BCG - GER C20 H34 CC=C(/C)CC....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 166 families.
1 1UKV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2BCG - GER C20 H34 CC=C(/C)CC....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 141 families.
1 1UKV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2BCG - GER C20 H34 CC=C(/C)CC....
3 3CPJ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BCG; Ligand: GER; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2bcg.bio1) has 12 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2BCG; Ligand: GDP; Similar sites found: 461
This union binding pocket(no: 2) in the query (biounit: 2bcg.bio1) has 21 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4ZKD GDP 0.00000003062 0.64803 1.766
2 2NCD ADP 0.0000012 0.62769 2.42718
3 4IDN GNP 0.0004753 0.4546 2.42826
4 1XMV ADP 0.00008448 0.4504 2.80899
5 1ION ADP 0.00007753 0.4632 2.88066
6 3DC4 ADP 0.000003314 0.46857 2.90698
7 1W5T ANP 0.001675 0.42889 2.91262
8 1W5T ADP 0.002722 0.41218 2.91262
9 4I4B NAD 0.04421 0.40084 2.91262
10 1SVM ATP 0.007892 0.42911 2.91777
11 1G3Q ADP 0.00003433 0.47077 2.95359
12 1QF9 ADP 0.006897 0.42206 3.09278
13 1QF9 ALF 0.006897 0.42206 3.09278
14 1QF9 C5P 0.006897 0.42206 3.09278
15 3FYH ADP 0.001014 0.44406 3.10559
16 2QQ0 ANP 0.003207 0.43245 3.26087
17 2QQ0 THM 0.002792 0.43245 3.26087
18 2QQ0 TMP 0.003571 0.43033 3.26087
19 4FRZ ADP 0.0000009683 0.47758 3.36788
20 2BIF ANP 0.0009043 0.45879 3.39806
21 2BIF SIN 0.001544 0.45879 3.39806
22 1G3M PCQ 0.00697 0.42402 3.40136
23 1G3M A3P 0.00697 0.42402 3.40136
24 2XT3 ADP 0.0000001396 0.48524 3.48837
25 2CHG ANP 0.0001219 0.46905 3.53982
26 1XP8 AGS 0.0001304 0.42999 3.55191
27 1SVI GDP 0.0000000001093 0.64205 3.58974
28 1H65 GDP 0.000006906 0.53444 3.7037
29 4LPS GDP 0.00000007152 0.56951 3.71901
30 5MEX PAP 0.002136 0.42232 3.72671
31 4YS0 ADP 0.001331 0.42576 3.75276
32 2GDJ ANP 0.0002611 0.42853 3.78788
33 3U6B GDP 0.00000000005982 0.82275 3.80711
34 5JBQ GDP 0.0000000001701 0.6503 3.80711
35 4G5G GDP 0.0000000001793 0.64942 3.80711
36 3U6K GDP 0.0000000002608 0.64461 3.80711
37 2BVN GNP 0.000000003184 0.69173 3.81679
38 1D8T GDP 0.0000000001311 0.65354 3.81679
39 4AG5 ADP 0.000003385 0.60587 3.8835
40 2HF9 GSP 0.0000002068 0.60232 3.8835
41 1Z6T ADP 0.00009765 0.48504 3.8835
42 1FNN ADP 0.0001435 0.47267 3.8835
43 1T5C ADP 0.0000008072 0.45058 3.8835
44 2XAU ADP 0.0001793 0.4461 3.8835
45 2B8W ALF 5GP 0.001027 0.44381 3.8835
46 3BOS CDP 0.0001568 0.43264 3.8835
47 2VF7 ADP 0.0002971 0.43086 3.8835
48 4ZNL BEF ADP 0.0003403 0.42731 3.8835
49 4PPF FLC 0.000004387 0.41293 3.8835
50 4KBF AMP 0.0006351 0.40788 3.8835
51 1G8S MET 0.01932 0.40731 3.8835
52 2ZE7 DST 0.01141 0.40077 3.8835
53 2ZE7 AMP 0.01058 0.40077 3.8835
54 3ZQ6 ADP ALF 0.00007645 0.49732 4.01235
55 2WOJ ADP ALF 0.00009193 0.49377 4.36893
56 2Q2Y ADP 0.0003519 0.4854 4.36893
57 2Q2Y MKR 0.0003539 0.48405 4.36893
58 3EWA ANP 0.0000553 0.44869 4.36893
59 5XDR ADP 0.0001029 0.4472 4.36893
60 3BFX A3P 0.0006736 0.44384 4.36893
61 1AQU A3P 0.002957 0.41202 4.3771
62 2QG6 NMN 0.003499 0.42514 4.52261
63 4HI0 GDP 0.0000005453 0.56411 4.72441
64 1P72 ADP 0.0001943 0.48768 4.79042
65 1IWE IMP 0.002235 0.48351 4.85437
66 5TSH ANP 0.000009065 0.47569 4.85437
67 5VGR GDP 0.0002419 0.46776 4.85437
68 5TSH ADP 0.000002839 0.46706 4.85437
69 4PFO ADP 0.0004393 0.46185 4.85437
70 1BG2 ADP 0.0000003421 0.46076 4.85437
71 2FAH GDP 0.0001531 0.45956 4.85437
72 1CR1 TTP 0.0003384 0.45889 4.85437
73 4XGU ADP 0.0002456 0.45634 4.85437
74 1YTM ATP 0.0003791 0.44666 4.85437
75 4FCW ADP 0.0001873 0.44283 4.85437
76 1YQT ADP 0.00001049 0.43841 4.85437
77 3A4M ADP 0.000004948 0.46289 5
78 4LJ9 ACP 0.0003999 0.42344 5.01475
79 2FNA ADP 0.00007095 0.46733 5.04202
80 3IUY AMP 0.001057 0.41571 5.26316
81 4DCT GDP 0.00000000004353 0.68583 5.33981
82 2C78 GNP 0.00000001998 0.64471 5.33981
83 2C77 GNP 0.00000004744 0.62529 5.33981
84 1TQ4 GDP 0.00000001937 0.62312 5.33981
85 3AB3 GDP 0.0000001728 0.60105 5.33981
86 1ZCB GDP 0.0000004874 0.5923 5.33981
87 2XTN GTP 0.00000147 0.56623 5.33981
88 3KJI ADP 0.00001958 0.49471 5.33981
89 3IO3 ADP 0.00008157 0.48319 5.33981
90 2ZPA ADP 0.0001627 0.47033 5.33981
91 1R6B ADP 0.00004417 0.46447 5.33981
92 4KFU ACP 0.000008213 0.44933 5.33981
93 1UJ2 C5P 0.001174 0.44469 5.33981
94 2ZR9 DTP 0.0000781 0.44218 5.33981
95 2IS6 ADP 0.00008185 0.44091 5.33981
96 1Q20 PLO 0.002587 0.438 5.33981
97 1Q20 A3P 0.002587 0.438 5.33981
98 1UJ2 ADP 0.001744 0.43705 5.33981
99 4OHY ANP 0.0003939 0.42258 5.33981
100 1NST A3P 0.001909 0.4191 5.33981
101 2ZPT A3P 0.02102 0.41338 5.33981
102 4Q1A 2XZ 0.007305 0.47101 5.35714
103 4Q1A UDP 0.007305 0.47101 5.35714
104 1Y63 ADP 0.000007341 0.48127 5.43478
105 4PX9 ADP 0.00004323 0.44398 5.47945
106 1GXU 2HP 0.00007387 0.51965 5.49451
107 2PL3 ADP 0.0001201 0.43083 5.50847
108 4R43 GDP 0.0000806 0.51283 5.51876
109 3P4X ADP 0.00000695 0.47438 5.56901
110 4GBM A3P 0.001754 0.43182 5.57276
111 3VMF GTP 0.00000005884 0.63283 5.68182
112 5FG3 GDP 0.0000000000993 0.64347 5.82524
113 2XTZ GSP 0.0000001603 0.61362 5.82524
114 1AZT GSP 0.0000003455 0.60598 5.82524
115 4P4T GDP 0.0000007653 0.57021 5.82524
116 5L3W GDP 0.000003691 0.51563 5.82524
117 1CS4 GSP 0.0000004374 0.51112 5.82524
118 2VVG ADP 0.00000007146 0.47876 5.82524
119 5IRN ADP 0.0000625 0.47242 5.82524
120 5I0H ADP BEF 0.0002131 0.46757 5.82524
121 2RGX AP5 0.002442 0.44841 5.82524
122 5J1J ANP 0.00004492 0.50135 5.96491
123 1SKQ GDP 0.00000000429 0.59289 5.97701
124 3TMK T5A 0.002535 0.43289 6.01852
125 5N69 ADP 0.00008871 0.46609 6.03015
126 1NN5 ANP 0.001706 0.44351 6.04651
127 3DKP ADP 0.0001335 0.43849 6.12245
128 3HDY FAD 0.04297 0.40327 6.29723
129 1PUJ GNP 0.00000001383 0.62183 6.31068
130 3B9Q MLI 0.00003447 0.5542 6.31068
131 1M7G ADX 0.0002461 0.48149 6.31068
132 1M7G AV2 0.000004309 0.47999 6.31068
133 4LYA ATP 0.00001978 0.47745 6.31068
134 1M7G ADP 0.0002761 0.47602 6.31068
135 2QEN ADP 0.000151 0.4649 6.31068
136 1K6M AGS 0.0003687 0.46141 6.31068
137 5I34 GDP 0.00006095 0.46119 6.31068
138 1XKV ATP 0.0001007 0.45574 6.31068
139 2Z5F A3P 0.003003 0.41793 6.31068
140 5WRJ A3P 0.004003 0.41783 6.31068
141 5WRI A3P 0.003686 0.41593 6.31068
142 4PJ3 ANP 0.003383 0.40404 6.31068
143 1VKJ A3P 0.007729 0.40015 6.31579
144 4GOX A3P 0.0003706 0.46132 6.38978
145 4QM7 GTP 0.00003133 0.45545 6.43275
146 1ZIN AP5 0.001359 0.45812 6.45161
147 4P3Y GDP 0.00000000006144 0.6488 6.59341
148 1T8U UAP SGN IDS SGN 0.01782 0.406 6.61765
149 1T8U A3P 0.0057 0.40588 6.61765
150 3FWY ADP 0.000009435 0.51532 6.6879
151 4D81 ADP 0.00006523 0.47172 6.71378
152 3H86 AP5 0.0007455 0.46397 6.77083
153 4MO2 FDA 0.01966 0.40303 6.79348
154 4J0Q GDP 0.0000000002618 0.79106 6.79612
155 3CNL GNP 0.000000002146 0.5962 6.79612
156 4H1V GNP 0.000003211 0.55008 6.79612
157 3EZ2 ADP 0.00004735 0.53123 6.79612
158 3DEF GDP 0.000002444 0.53084 6.79612
159 4XVU ATP 0.00007941 0.49054 6.79612
160 1G41 ADP 0.00003902 0.47321 6.79612
161 3NHB ADP 0.000004151 0.45373 6.79612
162 1P9B GDP 0.0003861 0.44881 6.79612
163 3VM7 GLC 0.01183 0.42407 6.79612
164 1VHT BA3 0.0009291 0.42115 6.79612
165 4P32 ADP 0.001387 0.43439 6.82731
166 1KO8 6PG 0.0002216 0.46457 6.85714
167 5GOE GDP 0.00000001543 0.60695 6.87204
168 5FTB ANP 0.0004175 0.4673 6.92841
169 5FHD ADP ALF 0.000557 0.43867 6.92841
170 3WXM GTP 0.00000006915 0.62973 6.93512
171 1WF3 GNP 0.0000000494 0.63881 6.97674
172 2GJ8 ALF GDP 0.00000002911 0.55294 6.97674
173 3UIE ANP 0.00003387 0.47386 7
174 4IHQ ADP 0.0001671 0.42336 7.06402
175 1F5N GNP 0.0005405 0.40575 7.06402
176 4PC3 GDP 0.00000001004 0.6276 7.28155
177 3TK1 GDP 0.0000000001087 0.62606 7.28155
178 5IRR GSP 0.000001066 0.5405 7.28155
179 3VX3 ADP 0.00001496 0.51481 7.28155
180 1IHU ADP 0.00003468 0.50626 7.28155
181 1IHU AF3 0.00003075 0.50626 7.28155
182 2C9O ADP 0.0001177 0.4787 7.28155
183 1W0J ADP 0.00007203 0.4707 7.28155
184 1NY5 ADP 0.0002149 0.45849 7.28155
185 1SQ5 ADP 0.00007218 0.45494 7.28155
186 1W0J ADP BEF 0.0004222 0.45255 7.28155
187 1S3G AP5 0.002046 0.44985 7.28155
188 4MKG AP5 0.002357 0.44699 7.28155
189 1JJV ATP 0.00007086 0.42561 7.28155
190 5TIV A3P 0.01518 0.41209 7.28155
191 3Q9L ATP 0.0001574 0.46403 7.30769
192 3CX8 GSP 0.0000003266 0.60707 7.38916
193 4HSE ADP 0.00002309 0.47203 7.55667
194 1BH2 GSP 0.0000009181 0.58698 7.61905
195 3BER AMP 0.002294 0.44275 7.63052
196 1NHX FTB 0.003404 0.44365 7.72627
197 1NHX PEP 0.003423 0.44255 7.72627
198 2GMV UN8 0.001671 0.43946 7.72627
199 2GMV PEP 0.002876 0.43186 7.72627
200 5M04 GDP 0.000000000549 0.62199 7.76699
201 4RZ3 ADP 0.00002204 0.50028 7.76699
202 2CE7 ADP 0.00007138 0.46133 7.76699
203 2OZE AGS 0.0002908 0.4595 7.76699
204 4IOK ADP 0.002962 0.42837 7.76699
205 4IOK XPO 0.003167 0.42231 7.76699
206 3IIJ ADP 0.000005395 0.48456 7.77778
207 4MKF AP5 0.002463 0.44718 7.8341
208 2W58 ADP 0.0000002864 0.45457 7.92079
209 1KK8 BEF ADP 0.0001763 0.46141 7.94702
210 2CBZ ATP 0.0000009168 0.65011 8.01688
211 1R0X ATP 0.0003504 0.41551 8.04196
212 3FVQ ATP 0.000532 0.45041 8.07799
213 1HTW ADP 0.00003829 0.46581 8.22785
214 2IYL GDP 0.0000009979 0.51933 8.25243
215 2QZ4 ADP 0.00003238 0.47561 8.25243
216 3LRE ADP 0.0000001662 0.46801 8.25243
217 1OS1 ATP 0.0006276 0.46005 8.25243
218 1OS1 PYR 0.0006799 0.46005 8.25243
219 2AWN ADP 0.00000005441 0.45571 8.25243
220 3B7G ANP 0.00009002 0.45346 8.25243
221 2GK6 ADP 0.0004279 0.40314 8.25243
222 5L3R GCP 0.000006067 0.54169 8.30565
223 1W7J ADP BEF 0.0001209 0.48097 8.60927
224 1GOJ ADP 0.00000005288 0.71384 8.73786
225 1YRB GDP 0.0000000002259 0.69172 8.73786
226 5HCN GCP 0.0000000006319 0.64827 8.73786
227 1WDT GTP 0.000003027 0.54458 8.73786
228 3E70 GDP 0.000001906 0.51779 8.73786
229 1G6O ADP 0.00007285 0.50211 8.73786
230 3RLF ANP 0.0004491 0.45767 8.73786
231 1RRC ADP 0.000006579 0.43271 8.73786
232 5IFS ADP 0.00008168 0.45984 8.83002
233 1UKZ ADP 0.002782 0.43655 8.86699
234 5BYK A3P 0.01769 0.40517 8.88031
235 5BYK OAQ 0.01769 0.40517 8.88031
236 4WOP CTP 0.0003727 0.45708 8.88889
237 4JLV ADP 0.0003307 0.41871 8.92193
238 1TAD ALF 0.0000003691 0.6047 8.95062
239 1TAD GDP 0.0000003691 0.6047 8.95062
240 3QKT ANP 0.0006062 0.45386 9.14454
241 2RCN GDP 0.000000000005773 0.7015 9.2233
242 3BFV ADP 0.00003046 0.46072 9.2233
243 3MGB PAP 0.003585 0.4146 9.2233
244 5MVR ADP 0.00004919 0.45327 9.25926
245 1G7C 5GP 0.0000001359 0.55161 9.27152
246 4X8O AP5 0.004126 0.44067 9.34579
247 1SVK ALF GDP 0.0000002969 0.61114 9.34844
248 1GP2 GDP 0.0000009947 0.53376 9.34844
249 2ODE ALF GDP 0.0000003986 0.6032 9.42857
250 2ZTS ADP 0.0005036 0.44926 9.56175
251 3H4S ADP 0.0000003001 0.47715 9.62963
252 4V03 ADP 0.00001761 0.48817 9.70874
253 3ZFD ANP 0.00002103 0.4829 9.70874
254 4E03 ADP 0.00002694 0.4764 9.70874
255 2IXE ATP 0.0009969 0.44062 9.70874
256 5GJC ATP 0.0001384 0.433 9.70874
257 4TTQ ATP 0.0001015 0.44493 9.76744
258 1Y3A GDP 0.0000008305 0.57706 10.0304
259 1LVG ADP 0.0000008324 0.49104 10.101
260 4WZA ACP 0.0002399 0.51155 10.1942
261 4WZA ADP 0.0002405 0.5115 10.1942
262 1FP6 ADP 0.0000168 0.4969 10.1942
263 4ZG4 VO4 ADP 0.0001717 0.47591 10.1942
264 5CK5 GDP 0.00000000006542 0.65148 10.6796
265 2OFW ADX 0.0008752 0.46583 10.6796
266 1X6V ADP 0.0005702 0.46192 10.6796
267 2J5V PCA 0.03868 0.40934 10.6796
268 3PQC GDP 0.00000001265 0.61078 10.7692
269 4YDS ATP 0.000007389 0.46053 10.9649
270 1G7S GDP 0.000000002088 0.72185 11.165
271 5L3S GNP 0.000007991 0.53644 11.165
272 5L3V GDP 0.00000228 0.5236 11.165
273 1V8K ANP 0.00001024 0.47819 11.165
274 5LB3 ADP 0.00003193 0.45347 11.165
275 4QRH 0O2 0.005488 0.4066 11.165
276 2JAQ DCP 0.008288 0.40229 11.2195
277 5HR5 ADP 0.0002061 0.45854 11.2583
278 4OI4 ATP 0.002355 0.42622 11.3043
279 1KK1 GNP 0.000000001515 0.60822 11.6505
280 3T34 GDP 0.00001766 0.48617 11.6505
281 5M7P ADP 0.0004742 0.45039 11.6505
282 1IN4 ADP 0.000123 0.47553 11.6766
283 2PZE ATP 0.000003053 0.44387 11.7904
284 3FB4 AP5 0.001994 0.45038 12.037
285 5J1S ATP 0.0008465 0.44749 12.1951
286 2PEZ DAT 0.0005832 0.46604 12.2905
287 2PEZ GGZ 0.0005832 0.46604 12.2905
288 1JWY GDP 0.0000008037 0.55385 12.6214
289 1JWY ADP 0.00007363 0.45372 12.6214
290 3DZD ADP 0.0003134 0.44552 12.6214
291 4QOS ADP 0.000146 0.48825 12.8302
292 5G41 AP5 0.003102 0.44652 13.0045
293 1F9V ADP 0.0000007277 0.48108 13.1068
294 4LC1 GDP 0.0000000006606 0.75786 13.3531
295 1DAK DPU 0.0008628 0.46956 13.3929
296 1DAK ADP 0.02113 0.43026 13.3929
297 3EC1 GDP 0.000000001663 0.63223 13.5922
298 1DAR GDP 0.00000001498 0.58847 13.5922
299 3TBK ANP 0.0001444 0.42032 13.5922
300 3MD0 GDP 0.0000000003033 0.62615 13.8028
301 4NCN GTP 0.000000005818 0.67118 14.0777
302 4TMZ GSP 0.000000006443 0.66924 14.0777
303 4RD0 GDP 0.000000009463 0.6588 14.0777
304 2KIN ADP 0.0000002887 0.46148 14.0777
305 4WZ6 ATP 0.00002047 0.43439 14.0777
306 1D2E GDP 0.00000001155 0.62462 14.3577
307 5LTJ ADP 0.0000829 0.45105 14.5631
308 2JLR ANP 0.0006405 0.43093 14.5631
309 2WHX ADP 0.00003548 0.4263 14.5631
310 5H56 TYD 0.0004867 0.46658 14.8718
311 5H56 ADP 0.0004867 0.46658 14.8718
312 1B7T ADP 0.0001696 0.44787 15.3846
313 1QF5 GDP 0.0009671 0.47434 15.534
314 2Y65 ADP 0.0000009879 0.46336 15.534
315 3QXC ATP 0.0006671 0.45558 15.534
316 1QF5 RPL 0.02765 0.43004 15.534
317 4KVA GTP 0.000005929 0.407 15.534
318 2FSH ANP 0.000692 0.40387 15.534
319 3KTA AP5 0.0003654 0.44124 15.6069
320 1FQK GDP 0.0000008539 0.57653 15.6463
321 2VB6 ADP BEF 0.0003618 0.46177 16.1074
322 4XTR ATP 0.00008306 0.48969 16.2162
323 4XTR ADP 0.00006118 0.48855 16.2162
324 3FKQ ATP 0.00002552 0.5106 17.9612
325 4BQS ADP 0.0000507 0.52253 18.1818
326 4BQS K2Q 0.001154 0.4566 18.1818
327 3ZS9 ADP ALF 0.00009193 0.49377 18.4211
328 2HCJ GDP 0.00000000003947 0.65439 18.9189
329 2DPY ADP 0.0000126 0.56818 18.932
330 2BEK ATP 0.0004172 0.438 18.932
331 4M9Q GNP 0.000000019 0.60896 19.4175
332 5K5Z ANP 0.0001379 0.48211 19.4175
333 1OFH ADP 0.00009808 0.45872 19.5402
334 3ZIA ADP 0.000119 0.46194 19.6721
335 3ZIA ATP 0.00005894 0.45803 19.6721
336 3WYA GDP 0.000000000699 0.63182 19.9029
337 2CK3 ANP 0.0004383 0.45185 20
338 2CK3 ADP 0.000393 0.43052 20
339 1ZUI SKM 0.0007409 0.46542 21.4286
340 2OM2 GDP 0.000001722 0.54443 22.2222
341 4CVN ADP 0.000005251 0.58748 22.6277
342 1NJF ADP 0.0000524 0.49144 22.8155
343 1NJF AGS 0.00008243 0.48766 22.8155
344 4V0K GDP 0.00000004254 0.56902 23.6686
345 3WY9 GDP 0.0000000001939 0.63562 25
346 4B47 GDP 0.00000000006686 0.64985 25.2427
347 2D7D ADP 0.0004562 0.41842 25.7282
348 1FQJ GDP 0.0000002679 0.55508 26.1905
349 1UPT GTP 0.00000001765 0.64705 26.6667
350 5KDO GDP 0.000001808 0.55701 27.027
351 5KUT GDP 0.000000002564 0.62277 27.5132
352 5KSP GDP 0.0000001142 0.56553 27.8947
353 2V7Q ATP 0.00004423 0.47052 28.7879
354 2V7Q ADP 0.00005579 0.45263 28.7879
355 1F2U ATP 0.001238 0.44367 29.5302
356 3QF7 ANP 0.000684 0.44356 30
357 2FH5 GTP 0.0000000005327 0.70948 30.5825
358 5KSZ GCP 0.0000004431 0.5535 30.5825
359 5BQ5 ADP BEF 0.00004713 0.51079 30.6878
360 1U0J ADP 0.0002507 0.41841 30.7116
361 5DI3 GNP 0.00000001512 0.6132 31.3514
362 1GOT GDP 0.000001236 0.5669 31.5068
363 4IEE AGS 0.0003737 0.48689 31.5534
364 4ZI2 GNP 0.000000008563 0.66069 32.1053
365 4GOJ GNP 0.000000009686 0.65837 32.2751
366 2QTV GNP 0.000000153 0.61188 32.3353
367 3REF GDP 0.000000005567 0.66881 32.4742
368 3AQ4 GDP 0.000000002231 0.62688 33.1522
369 1MR3 G3D 0.0000000006015 0.64716 33.7017
370 1FZQ GDP 0.0000000002714 0.64482 33.7017
371 4YLG GDP 0.000000002252 0.66608 34.104
372 3T1O GDP 0.0000001816 0.56931 34.3434
373 3T12 GDP ALF 0.000000596 0.55127 34.3434
374 3DOE GTP 0.0000000101 0.66071 34.375
375 1MKY GDP 0.00000000003512 0.6727 34.9515
376 2A5F GTP 0.00000007265 0.62609 35.4286
377 1KSH GDP 0.000000003029 0.67688 35.4839
378 1RJ9 GCP 0.00004726 0.52983 35.9223
379 2C04 GCP 0.00005756 0.49511 35.9223
380 4KAX GTP 0.00000002557 0.64005 36.0947
381 2W83 GTP 0.00000003843 0.63536 36.9697
382 2J59 GTP 0.00000003568 0.63677 37.3494
383 3PCR GTP 0.00000004996 0.58025 37.6543
384 3N5C GDP 0.000000001943 0.7353 38.2716
385 5JCP GDP ALF 0.00000000871 0.66265 38.835
386 4U5X GNP 0.000000003915 0.66853 39.3258
387 2X77 GDP 0.0000000003053 0.65624 39.6825
388 2GCN GDP 0.000000001728 0.69088 39.801
389 2GCO GNP 0.000000001461 0.67393 39.801
390 4BAS GNP 0.0000005628 0.58173 40.7035
391 3GJ8 GDP 0.000000000006894 0.83847 41.7476
392 3GJX GTP 0.0000000006285 0.7229 41.7476
393 3GJ4 GDP 0.00000000000251 0.71602 41.7476
394 3GJ5 GDP 0.000000000008707 0.71441 41.7476
395 3GJ7 GDP 0.000000000002957 0.71329 41.7476
396 1OW3 GDP 0.000000001277 0.67629 41.9689
397 3GJ0 GDP 0.00000000002597 0.82558 42.233
398 4HAT GNP 0.0000000002427 0.74425 42.233
399 5UWO GNP 0.0000000002085 0.74416 42.233
400 5UWP GNP 0.0000000002451 0.74406 42.233
401 5UWW GNP 0.0000000002253 0.74267 42.233
402 5DIF GNP 0.0000000002259 0.74261 42.233
403 5UWU GNP 0.0000000002268 0.74253 42.233
404 5UWR GNP 0.0000000002358 0.74178 42.233
405 5UWI GNP 0.0000000002561 0.74019 42.233
406 5UWS GNP 0.0000000003048 0.73984 42.233
407 1IBR GNP 0.000000000269 0.73924 42.233
408 5DHF GNP 0.0000000002807 0.73843 42.233
409 5UWT GNP 0.0000000002831 0.73826 42.233
410 5UWH GNP 0.0000000002859 0.73807 42.233
411 5DI9 GNP 0.0000000003566 0.7368 42.233
412 3M1I GTP 0.0000000003652 0.73336 42.233
413 3WYF GTP 0.0000000005614 0.72802 42.233
414 5BXQ GDP 0.00000000001 0.7127 42.233
415 3GJ3 GDP 0.000000000003642 0.71031 42.233
416 3CH5 GDP 0.00000000001446 0.70699 42.233
417 5UWQ GNP 0.0000000002017 0.62719 42.233
418 2WKQ GTP 0.000000001685 0.6352 42.7184
419 3Q85 GNP 0.000000000001865 0.7181 43.1953
420 1GWN GTP 0.00000001285 0.64978 43.4146
421 1KMQ GNP 0.000000007866 0.66546 43.4783
422 1RYH GNP 0.00000000004622 0.70371 43.8424
423 5EE5 GTP 0.000000002265 0.68578 43.8596
424 4XOI GTP 0.000000005582 0.67503 43.8889
425 2ZEJ GDP 0.0000000732 0.63124 44.0217
426 5IRC GDP 0.00000002796 0.59685 44.086
427 3LXR GDP 0.0000000001196 0.7676 44.3243
428 4D0N GDP 0.0000000000218 0.68201 44.3243
429 2QN6 GDP 0.00000000008508 0.64573 44.4444
430 1CXZ GSP 0.000000006533 0.6658 44.5055
431 1NF3 GNP 0.000000006018 0.67654 44.6154
432 1E96 GTP 0.000000001736 0.70038 44.7917
433 3Q72 GNP 0.000000000003108 0.69082 45.1807
434 4XSH GSP 0.000000001445 0.68711 45.2514
435 2CJW GDP 0.000000000003 0.70957 45.3125
436 1DS6 GDP 0.000000000005204 0.70306 45.3125
437 1I4D GDP 0.000000000005782 0.68539 45.3125
438 5HPY GDP 0.000000002148 0.66701 45.4054
439 4DID GDP 0.00000000003937 0.68941 45.5959
440 1TX4 ALF GDP 0.000000006561 0.61311 45.7627
441 1A4R GDP 0.0000000006233 0.70278 46.0733
442 1A4R GNH 0.0000000003614 0.69913 46.0733
443 1GRN GDP 0.0000000004347 0.69557 46.0733
444 2NGR GDP 0.00000000004724 0.68686 46.0733
445 4ITR GDP 0.000000002068 0.68043 46.0733
446 2WMO GTP 0.0000000007055 0.6575 46.3158
447 3T5G GDP 0.00000000001197 0.72572 46.4088
448 1MH1 GNP 0.0000000011 0.71212 46.7742
449 2W2X GSP 0.0000000009192 0.69925 47.027
450 3SBD GNP 0.0000000007685 0.716 47.0588
451 1G4U GDP 0.000000001569 0.68557 47.2826
452 1XTQ GDP 0.0000000002614 0.73004 47.4576
453 3WYG GTP 0.000000000875 0.71943 47.8022
454 2HT6 GDP 0.000000000002528 0.69519 48.2759
455 3E5H GNP 0.000000001013 0.71069 48.3146
456 1M7B GTP 0.000000004353 0.64984 48.3696
457 4YC7 GNP 0.000000001011 0.70099 48.6188
458 2FJU GSP 0.0000000009879 0.6979 48.8764
459 1HE1 GDP 0.000000001098 0.67392 49.4318
460 1HE1 AF3 0.02436 0.40111 49.4318
461 2J0V GDP 0.00000000002398 0.69566 49.5146
462 1X1R GDP 0.00000000006671 0.76611 50
Pocket No.: 3; Query (leader) PDB : 2BCG; Ligand: GER; Similar sites found: 48
This union binding pocket(no: 3) in the query (biounit: 2bcg.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4B5W PYR 0.03884 0.40507 1.5625
2 2J4D FAD 0.03543 0.40043 2.86976
3 3FW9 SLX 0.006191 0.42657 2.91262
4 1ZOA 140 0.02394 0.41729 3.09051
5 2Z9I GLY ALA THR VAL 0.01536 0.40603 3.39806
6 1DBT U5P 0.01078 0.41462 3.76569
7 3V66 D3A 0.01016 0.44112 3.8835
8 5U3B 7TD 0.01867 0.41616 3.8835
9 4GCZ FMN 0.01971 0.40157 3.8835
10 3IS2 FAD 0.01061 0.42756 3.8961
11 4REF 3N0 0.006679 0.41644 3.90625
12 3Q8G PEE 0.04024 0.41838 4.36893
13 1YIQ PQQ 0.01833 0.40657 4.36893
14 3QP4 HL0 0.01492 0.40377 4.3956
15 3P9C SAH 0.02266 0.41533 4.85437
16 1TKB N1T 0.03869 0.40516 4.85437
17 2NAD NAD 0.02943 0.41252 5.82524
18 1GEG GLC 0.01083 0.44367 5.85938
19 3R1V AZB 0.02544 0.40389 6.29921
20 3KJS DQ1 0.04408 0.4011 6.31068
21 3VRV YSD 0.03263 0.41978 6.64207
22 4QWT ACD 0.01734 0.41384 6.79612
23 4DQL NAP 0.04078 0.40687 6.79612
24 4DQL FAD 0.0246 0.4032 6.79612
25 2Z6D FMN 0.006355 0.42601 6.92308
26 5N7O 69Y 0.01535 0.40511 7.23982
27 5SVV FMN 0.009498 0.41918 7.29927
28 3GKJ HC3 0.01872 0.40444 7.32759
29 3QP8 HL0 0.01328 0.40823 7.6087
30 3EM0 CHD 0.04815 0.4112 7.97101
31 2ZCQ B65 0.03979 0.41186 8.25243
32 4R38 RBF 0.009546 0.41907 9.28571
33 5DJT FMN 0.01784 0.40372 10.3448
34 4EES FMN 0.02043 0.40253 11.3043
35 2Z6C FMN 0.008248 0.42039 11.6279
36 5JHD GLY ILE LEU GLY PHE VAL PHE THR LEU 0.04112 0.4076 12.1359
37 2VDY HCY 0.003918 0.40774 12.6214
38 3P3G 3P3 0.004665 0.44593 14.5631
39 3P3G UKW 0.004665 0.44593 14.5631
40 3TDC 0EU 0.003257 0.44619 15.0485
41 3WCA FPS 0.008608 0.43085 15.0485
42 4BVM VCA 0.02084 0.40534 15.7895
43 3RV5 DXC 0.004205 0.43399 16.8539
44 2QZT PLM 0.01699 0.41701 19.8198
45 4P42 PEE 0.02988 0.40031 19.9029
46 5HZ9 5M8 0.02109 0.41215 20
47 4DE9 VTP 0.02469 0.41106 20.2797
48 4Q9N 0WE 0.0152 0.40131 26.699
Feedback