Receptor
PDB id Resolution Class Description Source Keywords
1UMZ 1.8 Å EC: 2.4.1.207 XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUC NONASACCHARIDE XLLG. POPULUS TREMULA GLYCOSIDE HYDROLASE XET XTH XEH TRANSGLYCOSYLATION XYLOTRANSFERASE GLYCOSYLTRANSFERASE
Ref.: CRYSTAL STRUCTURES OF A POPLAR XYLOGLUCAN ENDOTRANSGLYCOSYLASE REVEAL DETAILS OF TRANSGLYCOSY ACCEPTOR BINDING PLANT CELL V. 16 874 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG BMA C:1;
E:1;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
570.545 n/a O=C(N...
BGC BGC BGC XYS XYS GAL F:1;
D:1;
 Valid;
Valid;
 none;
none;
 submit data
914.81 n/a O(CC1...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UMZ 1.8 Å EC: 2.4.1.207 XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUC NONASACCHARIDE XLLG. POPULUS TREMULA GLYCOSIDE HYDROLASE XET XTH XEH TRANSGLYCOSYLATION XYLOTRANSFERASE GLYCOSYLTRANSFERASE
Ref.: CRYSTAL STRUCTURES OF A POPLAR XYLOGLUCAN ENDOTRANSGLYCOSYLASE REVEAL DETAILS OF TRANSGLYCOSY ACCEPTOR BINDING PLANT CELL V. 16 874 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1UMZ - BGC BGC BGC XYS XYS GAL n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1UMZ - BGC BGC BGC XYS XYS GAL n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1UMZ - BGC BGC BGC XYS XYS GAL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BGC BGC BGC XYS XYS GAL; Similar ligands found: 36
No: Ligand ECFP6 Tc MDL keys Tc
1 BGC BGC BGC XYS XYS GAL 1 1
2 BGC BGC XYS BGC XYS XYS GAL 0.876543 0.972222
3 BGC BGC BGC XYS BGC XYS XYS GAL GAL 0.855422 0.972222
4 BGC BGC BGC XYS BGC XYS XYS GAL 0.855422 0.972222
5 BGC BGC GLC BGC XYS BGC XYS XYS 0.853333 1
6 BGC BGC XYS XYS GAL 0.82716 0.972222
7 BGC BGC BGC XYS BGC XYS GAL 0.807229 0.972222
8 BGC BGC BGC XYS XYS GAL GAL 0.783133 0.972222
9 BGC BGC BGC XYS BGC XYS XYS 0.710843 0.972222
10 BGC BGC BGC XYS BGC XYS 0.698795 0.972222
11 BGC BGC XYS GAL 0.691358 0.972222
12 BGC BGC BGC BGC XYS BGC XYS BGC BGC 0.682353 0.972222
13 BGC BGC BGC XYS BGC XYS BGC XYS BGC 0.682353 0.972222
14 BGC BGC BGC BGC BGC XYS 0.682353 0.972222
15 GLC GLC GLC 0.6375 0.972222
16 BGC BGC BGC XYS 0.635294 0.972222
17 NBG BGC BGC XYS BGC XYS XYS 0.630435 0.729167
18 GLC GLC XYS XYS 0.62963 0.944444
19 MAN BMA BMA 0.602564 0.972222
20 GLO BGC BGC XYS BGC XYS XYS 0.539216 0.945946
21 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.477778 0.916667
22 BMA BMA BMA BMA GLA 0.477778 0.916667
23 GLC GLC GLC GLC GLC 0.466667 0.916667
24 BGC GLC GLC GLC 0.466667 0.916667
25 BGC GLC GLC 0.454545 0.916667
26 G2F BGC BGC BGC BGC BGC 0.438202 0.85
27 BMA BMA BMA BMA GLA BMA GLA 0.425743 0.846154
28 BGC BGC BGC BGC 0.425532 0.916667
29 BGC GLA GAL 0.407407 0.916667
30 MAN MAN BMA 0.406593 0.972222
31 GLC AGL 0.402299 0.73913
32 MAN MAN MAN MAN MAN MAN MAN 0.401961 0.916667
33 MAN BMA BMA BMA BMA BMA BMA 0.4 0.916667
34 BMA MAN MAN 0.4 0.916667
35 GLC GLC GLC GLC BGC GLC GLC 0.4 0.916667
36 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.4 0.916667
Similar Ligands (3D)
Ligand no: 1; Ligand: BGC BGC BGC XYS XYS GAL; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UMZ; Ligand: BGC BGC BGC XYS XYS GAL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1umz.bio2) has 15 residues
No: Leader PDB Ligand Sequence Similarity
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