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Receptor
PDB id Resolution Class Description Source Keywords
1V84 1.82 Å EC: 2.4.1.135 CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH N- ACETYLLACTOSAMINE, UDP, AND MN2+ HOMO SAPIENS TRANSFERASE GLYCOPROTEIN GLYCOCYLTRANSFERASE HNK-1 EPITOP
Ref.: STRUCTURAL BASIS FOR ACCEPTOR SUBSTRATE RECOGNITION HUMAN GLUCURONYLTRANSFERASE, GLCAT-P, AN ENZYME CRI THE BIOSYNTHESIS OF THE CARBOHYDRATE EPITOPE HNK-1 J.BIOL.CHEM. V. 279 22693 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GAL NAG B:507;
Valid;
none;
submit data
383.35 n/a O=C(N...
GAL NDG A:505;
Valid;
none;
submit data
383.35 n/a O=C(N...
MN A:501;
B:502;
Part of Protein;
Part of Protein;
none;
none;
submit data
54.938 Mn [Mn+2...
TLA A:500;
Invalid;
none;
submit data
150.087 C4 H6 O6 [C@@H...
UDP A:503;
B:504;
Valid;
Valid;
none;
none;
submit data
404.161 C9 H14 N2 O12 P2 C1=CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1V84 1.82 Å EC: 2.4.1.135 CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH N- ACETYLLACTOSAMINE, UDP, AND MN2+ HOMO SAPIENS TRANSFERASE GLYCOPROTEIN GLYCOCYLTRANSFERASE HNK-1 EPITOP
Ref.: STRUCTURAL BASIS FOR ACCEPTOR SUBSTRATE RECOGNITION HUMAN GLUCURONYLTRANSFERASE, GLCAT-P, AN ENZYME CRI THE BIOSYNTHESIS OF THE CARBOHYDRATE EPITOPE HNK-1 J.BIOL.CHEM. V. 279 22693 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1V83 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1V84 - GAL NDG n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1V83 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1V84 - GAL NDG n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1V83 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1V84 - GAL NDG n/a n/a
3 1KWS - UGA C15 H22 N2 O18 P2 C1=CN(C(=O....
4 3CU0 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GAL NAG; Similar ligands found: 168
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG GAL 1 1
2 GAL NAG 1 1
3 GAL NGA A2G 0.881356 0.9375
4 NAG MAN BMA 0.822581 1
5 NAG NGA 0.693548 0.9375
6 NAG MBG 0.693548 0.957447
7 NAG A2G 0.693548 0.9375
8 NAG GAL BGC 0.657143 1
9 NAG GAL GAL NAG GAL 0.652778 0.9375
10 NGA GAL 0.646154 0.93617
11 NAG GDL 0.640625 0.9375
12 NDG NAG 0.640625 0.9375
13 CBS 0.640625 0.9375
14 CBS CBS 0.640625 0.9375
15 NGA GLA GAL BGC 0.635135 1
16 NAG GAL NAG 0.633803 0.9375
17 NAG MAN MAN MAN NAG 0.631579 0.9375
18 NGA GAL BGC 0.623188 1
19 FUC BGC GAL NAG 0.615385 0.978261
20 A2G MBG 0.606061 0.957447
21 MBG A2G 0.606061 0.957447
22 NDG NAG NAG 0.602941 0.918367
23 NAG NDG 0.602941 0.846154
24 NAG NAG NAG NAG NDG 0.602941 0.918367
25 NDG NAG NAG NAG 0.602941 0.918367
26 NAG NAG NDG NAG 0.602941 0.918367
27 CTO 0.602941 0.918367
28 NAG NAG 0.602941 0.846154
29 NAG NAG NAG NAG NAG 0.602941 0.918367
30 NAG NAG NAG NDG 0.602941 0.918367
31 NAG NAG NDG 0.602941 0.918367
32 NDG NAG NAG NDG 0.602941 0.918367
33 NAG NAG NAG NAG NAG NAG NAG NAG 0.602941 0.918367
34 NAG NAG NAG NAG NAG NAG 0.602941 0.918367
35 A2G GLA FUC 0.597222 0.978261
36 FUC GLA A2G 0.597222 0.978261
37 FUC GAL A2G 0.597222 0.978261
38 A2G GAL FUC 0.597222 0.978261
39 NGA GAL FUC 0.597222 0.978261
40 NAG MAN MMA 0.583333 0.957447
41 3QL 0.577465 0.865385
42 MAN MAN NAG 0.567568 0.957447
43 GLA NAG GAL FUC 0.564103 0.978261
44 GAL NAG GAL FUC 0.564103 0.978261
45 NAG MAN MAN 0.56 1
46 M3M 0.559322 0.733333
47 MAG 0.559322 0.893617
48 2F8 0.559322 0.893617
49 MAN GLC 0.559322 0.733333
50 NGR 0.559322 0.733333
51 LB2 0.559322 0.733333
52 BGC FUC GAL FUC A2G 0.548781 0.957447
53 GLC FUC GAL FUC A2G 0.548781 0.957447
54 NAG NAG NAG NAG 0.546667 0.849057
55 NAG NAG NAG 0.546667 0.849057
56 NAG MAN BMA MAN NAG GAL 0.539326 0.9375
57 FUC GAL NAG GAL FUC 0.536585 0.957447
58 NAG AMU 0.532468 0.9
59 AH0 NAG 0.532468 0.833333
60 NAG MUB 0.532468 0.9
61 NAG MAN 0.528571 0.957447
62 GN1 0.52381 0.75
63 NG1 0.52381 0.75
64 Z4S NAG NAG 0.518987 0.849057
65 LAT NAG GAL 0.518987 1
66 GLC GAL NAG GAL 0.518987 1
67 BMA Z4Y NAG 0.518519 0.978261
68 BGC BGC BGC GLC BGC BGC 0.515625 0.733333
69 GLC BGC BGC BGC BGC BGC BGC 0.515625 0.733333
70 NAG BDP NAG BDP NAG BDP NAG 0.511905 0.9
71 3YW 0.507463 0.913043
72 MA8 0.507042 0.843137
73 NAG NM9 0.506494 0.882353
74 GAL NAG GAL NAG GAL NAG 0.506329 0.918367
75 NAG GAL GAL NAG 0.506329 0.9375
76 A2G GAL BGC FUC 0.505882 0.978261
77 NAG GAL 2NA 0.505495 0.882353
78 NOJ NAG NAG NAG 0.5 0.803571
79 A2G GAL 0.5 1
80 GAL NGA 0.5 1
81 GAL A2G 0.5 1
82 NOJ NAG NAG 0.5 0.818182
83 NGT NAG 0.5 0.775862
84 GAL NAG GAL GLC 0.493671 1
85 BGC GAL NAG GAL 0.493671 1
86 A2G GAL NAG FUC 0.488372 0.918367
87 FUC GAL NAG A2G 0.488372 0.918367
88 GAL NGA GLA BGC GAL 0.487805 1
89 DLD 0.4875 0.775862
90 TNR 0.485714 0.86
91 A2G GAL NAG FUC GAL GLC 0.484211 0.918367
92 GLC GAL NAG GAL FUC A2G 0.484211 0.918367
93 FUC BGC GAL NAG GAL 0.483146 0.978261
94 FHY 0.482353 0.849057
95 NAG AH0 0.481928 0.833333
96 GAL NAG GAL BGC 0.481928 0.957447
97 LEC NGA 0.481928 0.703125
98 BMA MAN MAN MAN 0.478261 0.733333
99 NAG GAL FUC FUC A2G 0.477273 0.918367
100 FUC GAL NAG A2G FUC 0.477273 0.918367
101 NAG A2G GAL 0.475 0.9375
102 NDG 0.474576 0.888889
103 BM3 0.474576 0.888889
104 HSQ 0.474576 0.888889
105 NGA 0.474576 0.888889
106 NAG 0.474576 0.888889
107 A2G 0.474576 0.888889
108 SN5 SN5 0.472222 0.803922
109 GAL NAG MAN 0.467532 1
110 P3M 0.465753 0.6
111 GYU 0.464789 0.767857
112 6Y2 0.464286 0.703125
113 NAG NAG NGT 0.464286 0.762712
114 GAL NAG GAL 0.4625 0.957447
115 GLA GAL NAG 0.460526 1
116 MAN BMA NAG 0.460526 1
117 SIA GAL NGA 0.458333 0.865385
118 NLC 0.457143 1
119 GAL NDG 0.457143 1
120 NDG GAL 0.457143 1
121 WZ5 0.455556 0.957447
122 BGA 0.449438 0.818182
123 MMA MAN NAG MAN NAG NAG 0.448276 0.9
124 NAG AMU NAG AMV 0.448276 0.882353
125 NAG BMA NAG MAN MAN NAG NAG 0.447917 0.918367
126 TCG 0.444444 0.775862
127 3PV 0.443182 0.9
128 NAG NAG BMA MAN 0.443182 0.865385
129 NAG NDG BMA 0.439024 0.865385
130 NAG NAG BMA 0.439024 0.865385
131 GAL NAG SIA GAL 0.438095 0.849057
132 GAL MGC 0.43662 0.957447
133 AO3 0.433333 0.692308
134 NAA NAA AMI 0.433333 0.692308
135 HD4 0.43038 0.741379
136 NAG MAN BMA NDG MAN NAG GAL 0.43 0.918367
137 CGC 0.428571 0.733333
138 6ZC 0.428571 0.68254
139 LEC 0.428571 0.68254
140 SIA NAG GAL GAL 0.427184 0.849057
141 NAG NAG BMA MAN MAN NAG GAL NAG 0.425743 0.918367
142 M5G 0.425743 0.9375
143 57S 0.425 0.741379
144 GLC NAG GAL GAL FUC 0.423913 0.978261
145 GAL GLC NAG GAL FUC 0.423913 0.978261
146 FUC GAL NAG GAL BGC 0.423913 0.978261
147 GUM 0.423913 0.803571
148 ALA NAG AH0 DAL 0.421053 0.818182
149 DR3 0.419753 0.978261
150 NAG BMA 0.418919 0.897959
151 NAG NAG BMA MAN NAG 0.418367 0.849057
152 GYT 0.417722 0.762712
153 1GN ACY GAL ACY 1GN BGC GAL BGC 0.417582 0.9375
154 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.417582 0.9375
155 NAG NAG BMA MAN MAN NAG NAG 0.417476 0.849057
156 8VZ 0.416667 0.918367
157 SNG 0.415385 0.816327
158 UMG 0.414894 0.803571
159 AMU 0.414286 0.87234
160 NAG AMU ALA DGL 0.414141 0.833333
161 MAN BMA MAN 0.410959 0.733333
162 NAG MU2 0.41 0.818182
163 NAG GDL PHJ 0.40625 0.737705
164 NAG NAG BMA MAN MAN 0.404255 0.9375
165 NAG BDP 0.402597 0.916667
166 GLA GAL NAG FUC GAL GLC 0.402062 0.978261
167 GC4 NAG 0.4 0.916667
168 JXD 0.4 0.661765
Ligand no: 2; Ligand: GAL NDG; Similar ligands found: 310
No: Ligand ECFP6 Tc MDL keys Tc
1 GAL NDG 1 1
2 NDG GAL 1 1
3 NLC 1 1
4 MAN BMA NAG 0.847458 1
5 GLA GAL NAG 0.847458 1
6 GAL NAG GAL NAG GAL NAG 0.746269 0.918367
7 NAG GAL GAL NAG 0.746269 0.9375
8 NAG FUC 0.728814 0.934783
9 G6S NAG 0.723077 0.725806
10 NDG NAG 0.716667 0.9375
11 CBS CBS 0.716667 0.9375
12 NAG GDL 0.716667 0.9375
13 CBS 0.716667 0.9375
14 8VZ 0.694915 0.918367
15 GAL BGC NAG GAL 0.691176 1
16 NAG GAL NAG 0.676471 0.9375
17 NAG NAG NAG NDG 0.671875 0.918367
18 NAG NAG NDG 0.671875 0.918367
19 NAG NAG NAG NAG NDG 0.671875 0.918367
20 NAG NAG NDG NAG 0.671875 0.918367
21 CTO 0.671875 0.918367
22 NAG NAG NAG NAG NAG 0.671875 0.918367
23 NDG NAG NAG NDG 0.671875 0.918367
24 NAG NAG NAG NAG NAG NAG 0.671875 0.918367
25 NDG NAG NAG 0.671875 0.918367
26 NDG NAG NAG NAG 0.671875 0.918367
27 NAG NAG NAG NAG NAG NAG NAG NAG 0.671875 0.918367
28 NDG GAL FUC 0.671642 0.978261
29 DR2 0.671642 0.978261
30 FUL GAL NAG 0.671642 0.978261
31 FUC GAL NDG 0.671642 0.978261
32 FUC GAL NAG 0.671642 0.978261
33 NAG GAL FUC 0.671642 0.978261
34 GAL NAG FUC 0.671642 0.978261
35 NAG BMA MAN MAN MAN MAN 0.649351 1
36 GAL A2G 0.639344 1
37 GAL NGA 0.639344 1
38 A2G GAL 0.639344 1
39 GAL NAG MAN 0.632353 1
40 NAG NAG BMA MAN MAN 0.625 0.9375
41 UNU GAL NAG 0.608108 0.918367
42 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.60241 1
43 TCG 0.597222 0.775862
44 LAT NAG GAL 0.594595 1
45 GLC GAL NAG GAL 0.594595 1
46 FUC NDG GAL 0.585714 0.978261
47 HS2 0.585714 0.877551
48 GAL NDG FUC 0.585714 0.978261
49 NAG BMA 0.584615 0.897959
50 MAN BMA NAG NAG MAN NAG GAL GAL 0.581395 0.918367
51 NAG MAN MAN MAN NAG GAL NAG GAL 0.581395 0.918367
52 NAG GAL GAL NAG GAL 0.581081 0.9375
53 BGC GAL 0.578947 0.733333
54 LAT 0.578947 0.733333
55 GLC GAL 0.578947 0.733333
56 CBI 0.578947 0.733333
57 B2G 0.578947 0.733333
58 CBK 0.578947 0.733333
59 GLA GAL 0.578947 0.733333
60 BGC BMA 0.578947 0.733333
61 GAL BGC 0.578947 0.733333
62 MAL 0.578947 0.733333
63 GLA GLA 0.578947 0.733333
64 N9S 0.578947 0.733333
65 BMA GAL 0.578947 0.733333
66 LBT 0.578947 0.733333
67 MAB 0.578947 0.733333
68 GAL NAG GAL 0.575342 0.957447
69 NAG NAG BMA 0.567568 0.865385
70 BGC GAL NAG GAL 0.567568 1
71 NAG NDG BMA 0.567568 0.865385
72 GAL NAG GAL GLC 0.567568 1
73 U63 0.566667 0.673469
74 GAL MGC 0.5625 0.957447
75 A2G GAL NAG FUC 0.555556 0.918367
76 FUC GAL NAG A2G 0.555556 0.918367
77 SN5 SN5 0.552239 0.803922
78 NAG MAN BMA NDG MAN NAG GAL 0.549451 0.918367
79 NGA GAL BGC 0.549296 1
80 GCS GCS NAG 0.545455 0.918367
81 M5G 0.543478 0.9375
82 NAG NAG BMA MAN MAN NAG GAL NAG 0.543478 0.918367
83 GLA GAL GLC 0.540984 0.733333
84 CE5 0.540984 0.733333
85 GLC GAL GAL 0.540984 0.733333
86 BGC BGC GLC 0.540984 0.733333
87 CT3 0.540984 0.733333
88 BGC BGC BGC GLC 0.540984 0.733333
89 BGC GLC GLC GLC 0.540984 0.733333
90 GLC BGC BGC BGC BGC 0.540984 0.733333
91 BGC GLC GLC GLC GLC 0.540984 0.733333
92 GLC GLC GLC GLC GLC 0.540984 0.733333
93 GAL GAL GAL 0.540984 0.733333
94 BMA BMA BMA BMA BMA BMA 0.540984 0.733333
95 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.540984 0.733333
96 BMA BMA BMA 0.540984 0.733333
97 GLC BGC BGC 0.540984 0.733333
98 GLC BGC GLC 0.540984 0.733333
99 GLA GAL BGC 0.540984 0.733333
100 CTT 0.540984 0.733333
101 MAN BMA BMA BMA BMA 0.540984 0.733333
102 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.540984 0.733333
103 MLR 0.540984 0.733333
104 MAN BMA BMA 0.540984 0.733333
105 CTR 0.540984 0.733333
106 BGC BGC BGC 0.540984 0.733333
107 BMA MAN BMA 0.540984 0.733333
108 MAN MAN BMA BMA BMA BMA 0.540984 0.733333
109 BGC BGC BGC BGC BGC 0.540984 0.733333
110 GLC BGC BGC BGC BGC BGC 0.540984 0.733333
111 GLC BGC BGC BGC 0.540984 0.733333
112 GLC GLC BGC 0.540984 0.733333
113 CEY 0.540984 0.733333
114 MT7 0.540984 0.733333
115 CE8 0.540984 0.733333
116 B4G 0.540984 0.733333
117 BGC BGC BGC BGC BGC BGC 0.540984 0.733333
118 MAN BMA BMA BMA BMA BMA 0.540984 0.733333
119 CEX 0.540984 0.733333
120 BGC BGC BGC BGC 0.540984 0.733333
121 CE6 0.540984 0.733333
122 BGC GLC GLC GLC GLC GLC GLC 0.540984 0.733333
123 BGC GLC GLC 0.540984 0.733333
124 DXI 0.540984 0.733333
125 MTT 0.540984 0.733333
126 BMA BMA BMA BMA BMA 0.540984 0.733333
127 GAL NGA GLA BGC GAL 0.538462 1
128 ASG 0.532258 0.66129
129 NAG NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.531915 0.9375
130 GAL NAG GAL BGC 0.531646 0.957447
131 BEK GAL NAG 0.52381 0.789474
132 NAG GAL BGC 0.52 1
133 NDG 0.517857 0.888889
134 HSQ 0.517857 0.888889
135 NAG 0.517857 0.888889
136 A2G 0.517857 0.888889
137 BM3 0.517857 0.888889
138 NGA 0.517857 0.888889
139 4U1 0.51087 0.865385
140 NAG GAL SIA 0.51087 0.849057
141 LAT GLA 0.508475 0.733333
142 MMA MAN 0.508197 0.73913
143 DR5 0.508197 0.73913
144 GLA EGA 0.507937 0.73913
145 NAG A2G GAL 0.506494 0.9375
146 NGA GLA GAL BGC 0.506329 1
147 NAG NAG BMA MAN 0.506024 0.865385
148 MAG FUC GAL 0.5 0.9375
149 GLA GAL GAL 0.5 0.733333
150 FUC BGC GAL NAG GAL 0.494253 0.978261
151 BCW 0.493506 0.957447
152 FUC GAL NDG FUC 0.493506 0.957447
153 FUC GAL NAG FUC 0.493506 0.957447
154 FUC NAG GAL FUC 0.493506 0.957447
155 BDZ 0.493506 0.957447
156 GAL NAG FUC FUC 0.493506 0.957447
157 FUC NDG GAL FUC 0.493506 0.957447
158 GAL NDG FUC FUC 0.493506 0.957447
159 GAL LOG 0.492958 0.803571
160 NAG BMA NAG MAN MAN NAG NAG 0.48913 0.918367
161 GAL NOK 0.486111 0.8
162 4U2 0.483516 0.882353
163 2M4 0.483333 0.733333
164 8VW 0.482353 0.849057
165 GAL NAG GAL FUC 0.481481 0.978261
166 GLA NAG GAL FUC 0.481481 0.978261
167 GLC GLC XYP 0.478873 0.733333
168 BMA BMA 0.47619 0.680851
169 KPM 0.47619 0.846154
170 BGC BGC 0.47619 0.680851
171 MAN GLC 0.47541 0.733333
172 M3M 0.47541 0.733333
173 LB2 0.47541 0.733333
174 NGR 0.47541 0.733333
175 GAL A2G MBN 0.474359 0.957447
176 GAL SER A2G 0.473684 0.882353
177 BQZ 0.473684 0.666667
178 A2G SER GAL 0.473684 0.882353
179 NGA SER GAL 0.473684 0.882353
180 GAL TNR 0.473684 0.882353
181 NAG SIA GAL 0.473118 0.865385
182 TRE 0.471698 0.733333
183 NAG NGA 0.471429 0.9375
184 FUC BGC GAL 0.471429 0.755556
185 BGC BGC BGC BGC BGC BGC BGC BGC 0.471429 0.733333
186 NAG A2G 0.471429 0.9375
187 GAL FUC 0.46875 0.733333
188 FUC NAG GAL 0.467532 0.9
189 DR3 0.467532 0.978261
190 NAG MAN BMA MAN NAG GAL 0.467391 0.9375
191 FUC GAL NAG GAL BGC 0.465909 0.978261
192 GAL GLC NAG GAL FUC 0.465909 0.978261
193 GLC NAG GAL GAL FUC 0.465909 0.978261
194 A2G MBG 0.464789 0.957447
195 MBG A2G 0.464789 0.957447
196 XYT 0.463768 0.6
197 NAG GCU NAG GCD 0.463158 0.833333
198 CGC 0.462687 0.733333
199 GAL A2G THR 0.461538 0.882353
200 FUC C4W NAG BMA 0.460674 0.865385
201 GLA MBG 0.459016 0.73913
202 NAG GAL 0.457143 1
203 GAL NAG 0.457143 1
204 GLA GAL NAG FUC GAL GLC 0.456522 0.978261
205 BMA BMA MAN 0.454545 0.733333
206 MAL EDO 0.454545 0.702128
207 MAN MAN BMA 0.454545 0.733333
208 MAG 0.451613 0.893617
209 2F8 0.451613 0.893617
210 G2F BGC BGC BGC BGC BGC 0.450704 0.66
211 GLA GAL BGC 5VQ 0.449275 0.708333
212 GLC GAL NAG GAL FUC FUC 0.445652 0.957447
213 BGC GAL NAG GAL FUC FUC 0.445652 0.957447
214 NAG NAG NAG 0.443038 0.849057
215 NAG NAG NAG NAG 0.443038 0.849057
216 GAL GC2 0.443038 0.6875
217 FUC NAG GLA GAL 0.44186 0.957447
218 NAG GAL NGC 0.44 0.865385
219 BMA BMA GLA BMA BMA 0.44 0.733333
220 GLC BGC BGC BGC BGC BGC BGC 0.439394 0.733333
221 BGC BGC BGC GLC BGC BGC 0.439394 0.733333
222 NPO A2G GAL 0.439024 0.714286
223 GAL A2G NPO 0.439024 0.714286
224 8B7 0.438356 0.755556
225 LAT FUC 0.438356 0.755556
226 FUC GAL GLC 0.438356 0.755556
227 BGC GAL FUC 0.438356 0.755556
228 GLC GAL FUC 0.438356 0.755556
229 MDM 0.4375 0.73913
230 M13 0.4375 0.73913
231 GAL MBG 0.4375 0.73913
232 GLA GLA FUC 0.43662 0.755556
233 FUC GAL GLA 0.43662 0.755556
234 GAL GAL FUC 0.43662 0.755556
235 FUC GLA GLA 0.43662 0.755556
236 GLA GAL FUC 0.43662 0.755556
237 ABD 0.433735 0.977778
238 NAG BDP 0.432432 0.916667
239 NAG AMU 0.432099 0.9
240 NAG MUB 0.432099 0.9
241 A2G GAL BGC FUC 0.431818 0.978261
242 DOM 0.430769 0.702128
243 GLA GAL GLC NBU 0.430556 0.68
244 A2G GAL FUC 0.43038 0.978261
245 A2G GLA FUC 0.43038 0.978261
246 FUC GLA A2G 0.43038 0.978261
247 NGA GAL FUC 0.43038 0.978261
248 FUC GAL A2G 0.43038 0.978261
249 BGC GLA GAL FUC 0.43038 0.755556
250 BMA MAN MAN MAN 0.428571 0.733333
251 ACY 1GN GAL 1GN BGC ACY GAL BGC 0.426966 0.9375
252 1GN ACY GAL ACY 1GN BGC GAL BGC 0.426966 0.9375
253 GLC GLC GLC BGC 0.426667 0.733333
254 NAG NDG 0.426667 0.846154
255 NAG NAG 0.426667 0.846154
256 FMO 0.426471 0.66
257 BGC BGC BGC FRU 0.424658 0.66
258 GN1 0.424242 0.75
259 NG1 0.424242 0.75
260 CG3 A2G GAL 0.423529 0.703125
261 NAG NAG BMA BMA 0.423529 0.833333
262 NAG MAN BMA 0.423077 1
263 ABL 0.42029 0.877551
264 NAG MAN MAN 0.419753 1
265 LMT 0.418919 0.641509
266 UMQ 0.418919 0.641509
267 NAG MAN 0.418919 0.957447
268 NGA GAL 0.418919 0.93617
269 DMU 0.418919 0.641509
270 LMU 0.418919 0.641509
271 FUC C4W NAG BMA MAN 0.418367 0.865385
272 BMA FRU 0.41791 0.64
273 FRU GAL 0.41791 0.64
274 GAL NGA A2G 0.415584 0.9375
275 T6P 0.415385 0.6
276 RZM 0.415385 0.72549
277 FUC NAG 0.413333 0.88
278 NAG NAG BMA MAN NAG 0.412371 0.849057
279 BMA BMA BMA BMA 0.410959 0.733333
280 NAG MBG 0.410959 0.957447
281 DLD 0.409639 0.775862
282 BMX 0.409091 0.732143
283 FUC BGC GAL NAG 0.409091 0.978261
284 FUC GAL NAG GAL FUC 0.409091 0.957447
285 4QY 0.409091 0.732143
286 16G 0.409091 0.732143
287 4RS 0.408451 0.7
288 NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.408163 0.918367
289 GLC GLC XYS 0.407895 0.755556
290 FUC GAL NAG A2G FUC 0.406593 0.918367
291 NAG GAL FUC FUC A2G 0.406593 0.918367
292 SNG 0.40625 0.816327
293 MAN MNM 0.405797 0.84
294 AMU 0.405797 0.87234
295 MAN MAN MAN GLC 0.405405 0.733333
296 NOJ NAG NAG NAG 0.404762 0.803571
297 ASG GCD 0.404762 0.671875
298 NOJ NAG NAG 0.404762 0.818182
299 Z4S NAG NAG 0.404762 0.849057
300 L42 0.404762 0.646154
301 A2G GAL NAG FUC GAL GLC 0.40404 0.918367
302 GLC GAL NAG GAL FUC A2G 0.40404 0.918367
303 NAG NAG BMA MAN MAN MAN MAN 0.403846 0.865385
304 MAN BMA MAN 0.402778 0.733333
305 OXZ BGC BGC 0.4 0.690909
306 G3I 0.4 0.76
307 NBG 0.4 0.888889
308 GLO GLC GLC 0.4 0.73913
309 GAL BGC BGC XYS 0.4 0.702128
310 G2I 0.4 0.76
Ligand no: 3; Ligand: UDP; Similar ligands found: 117
No: Ligand ECFP6 Tc MDL keys Tc
1 UDP 1 1
2 UTP 0.892308 1
3 UNP 0.8 0.970149
4 U5P 0.78125 0.984615
5 U 0.78125 0.984615
6 UPU 0.72973 0.940298
7 2KH 0.722222 0.970149
8 44P 0.720588 0.955882
9 UFM 0.717949 0.941176
10 GDU 0.717949 0.941176
11 URM 0.717949 0.927536
12 660 0.717949 0.927536
13 UPG 0.717949 0.941176
14 GUD 0.717949 0.941176
15 UDP UDP 0.714286 0.939394
16 UPP 0.705128 0.941176
17 UDH 0.705128 0.864865
18 U2F 0.691358 0.888889
19 UFG 0.691358 0.888889
20 UPF 0.691358 0.888889
21 UAD 0.670732 0.941176
22 UDX 0.670732 0.941176
23 3UC 0.658824 0.888889
24 USQ 0.654762 0.820513
25 UGB 0.654762 0.955224
26 UGA 0.654762 0.955224
27 G3N 0.647059 0.914286
28 UDM 0.636364 0.914286
29 URI 0.625 0.863636
30 UD1 0.622222 0.927536
31 UD2 0.622222 0.927536
32 Y6W 0.607143 0.888889
33 CDP 0.605263 0.942029
34 HP7 0.591398 0.941176
35 UD7 0.591398 0.927536
36 MJZ 0.585106 0.914286
37 IUG 0.583333 0.810127
38 F5G 0.578947 0.927536
39 12V 0.578947 0.901408
40 HWU 0.578947 0.901408
41 F5P 0.578947 0.914286
42 UD4 0.578947 0.914286
43 CJB 0.573529 0.820895
44 UDZ 0.571429 0.853333
45 DUD 0.571429 0.913043
46 UP5 0.571429 0.853333
47 U U 0.563218 0.955224
48 EPZ 0.56 0.914286
49 5GW 0.559524 0.942029
50 EPU 0.554455 0.901408
51 EEB 0.554455 0.901408
52 U3P 0.547945 0.939394
53 UA3 0.547945 0.939394
54 4TC 0.544554 0.831169
55 HF4 0.54321 0.942029
56 CTP 0.54321 0.942029
57 CSQ 0.531915 0.851351
58 CSV 0.531915 0.851351
59 DUT 0.52439 0.913043
60 4GW 0.516484 0.915493
61 UMA 0.513761 0.914286
62 U4S 0.513158 0.753425
63 U2P 0.506667 0.954545
64 U2S 0.5 0.767123
65 U3S 0.5 0.753425
66 PUP 0.48913 0.913043
67 U21 0.486957 0.810127
68 U20 0.486957 0.810127
69 U22 0.486957 0.790123
70 DKX 0.486486 0.746479
71 U1S 0.482759 0.75
72 A U 0.481132 0.805195
73 2QR 0.478632 0.822785
74 5FU 0.474359 0.914286
75 G U 0.472222 0.7875
76 8OD 0.47191 0.851351
77 C5G 0.468085 0.888889
78 7XL 0.465909 0.888889
79 U U U U 0.461538 0.940298
80 UMF 0.461538 0.857143
81 G8D 0.460674 0.855263
82 UTP U U U 0.456522 0.895522
83 2TU 0.452055 0.774648
84 4RA 0.451613 0.855263
85 C2G 0.450549 0.901408
86 DU 0.45 0.898551
87 UMP 0.45 0.898551
88 C 0.45 0.927536
89 CAR 0.45 0.927536
90 C5P 0.45 0.927536
91 UAG 0.448 0.864865
92 CDC 0.446809 0.777778
93 5BU 0.444444 0.914286
94 UD0 0.444444 0.844156
95 N3E 0.440476 0.733333
96 UC5 0.440476 0.9
97 UUA 0.438356 0.772727
98 DUP 0.431818 0.887324
99 2GW 0.431373 0.901408
100 M7G 0.430108 0.780488
101 CNU 0.428571 0.927536
102 CDM 0.427083 0.842105
103 H6Y 0.425532 0.851351
104 16B 0.421687 0.888889
105 S5P 0.419753 0.915493
106 8GT 0.419355 0.855263
107 CXY 0.418367 0.888889
108 UPA 0.418182 0.842105
109 U2G 0.410714 0.822785
110 U A A U 0.409836 0.842105
111 UML 0.408759 0.810127
112 UP6 0.407407 0.871429
113 M7M 0.40625 0.771084
114 1GW 0.40367 0.864865
115 BMP 0.402439 0.970149
116 APU 0.401786 0.828947
117 PMP UD1 0.401575 0.7875
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1V84; Ligand: UDP; Similar sites found with APoc: 81
This union binding pocket(no: 1) in the query (biounit: 1v84.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 2PHX MAN MAN 1.19048
2 1Q8P MAN MMA 1.19048
3 2GND MAN MMA 1.19048
4 2AUY NAG MAN MMA 1.19048
5 2PHR MAN MAN 1.19048
6 2PHF MAN MAN 1.19048
7 1Q8S MAN MMA 1.19048
8 1Q8Q MAN MMA 1.19048
9 2PHW MAN MAN 1.19048
10 1TZD ADP 1.97628
11 2D3Y DU 2.28311
12 3K8D CTP 2.37154
13 1QGQ UDP 2.7668
14 3L6R MLI 2.7668
15 1O7Q UDP 2.7668
16 5OVK NDP 2.7668
17 2BVL GLC 2.7668
18 2BVL UDP 2.7668
19 1ZDQ MSM 2.7668
20 1O7Q GAL NAG 2.7668
21 6H21 UD1 3.16206
22 2AGD UDH 3.16206
23 2AGD NAG MAN BMA 3.16206
24 3CKJ CIT 3.16206
25 4I4Z 2NE 3.16206
26 6EYT UDP 3.16206
27 1GPJ CIT 3.16206
28 3EYA TDP 3.16206
29 4IRP UDP 3.18725
30 2IDV M7G 3.38983
31 5FOM A2H 3.55731
32 3ZF8 GDP 3.55731
33 5IM3 DTP 3.55731
34 2FP2 TSA 3.61446
35 2QGI UDP 3.62903
36 4M4K XYP XYP 3.83275
37 4M4K GDU 3.83275
38 2BO4 FLC 3.95257
39 2D7I UDP 3.95257
40 3U2U UDP 3.95257
41 6BSW CE6 3.95257
42 6BSW UDP 3.95257
43 2PA4 UPG 3.95257
44 1QPG MAP 3.95257
45 5UC1 486 4.05405
46 1OMZ UD2 4.34783
47 5H62 UDP 4.34783
48 1JV1 UD1 4.34783
49 2Y6P CTP 4.70085
50 2CHT TSA 4.72441
51 5VCM UDP 4.74308
52 4DEC 3PG 4.74308
53 4DEC UDP 4.74308
54 2AE2 NAP 4.74308
55 2AE2 PTO 4.74308
56 3RC1 NAP 5.13834
57 3RC1 TLO 5.13834
58 1H7F C5P 5.30612
59 1YRO GDU 5.92885
60 2RGJ FAD 5.92885
61 5WS9 AMP 6.32411
62 1E3I CXF 6.71937
63 3IOI 1GW 6.71937
64 1EYR CDP 7.45614
65 4A01 2PN 7.90514
66 4I42 1HA 7.90514
67 5MM0 GDD 8.3004
68 6H0B UDP 8.69565
69 1GA8 DEL 9.09091
70 1GA8 UPF 9.09091
71 6APV 3L4 9.88142
72 5TZJ UD1 10.2767
73 5NDF LU2 11.8577
74 5NDF UDP 11.8577
75 5AJP UDP 11.8577
76 2VL8 UDP 12.6482
77 2VL8 CTS 12.6482
78 2J0B UDP 13.4387
79 5Z2L NDP 14.6939
80 2APC UDM 19.3676
81 2FFU UDP 30.7692
Pocket No.: 2; Query (leader) PDB : 1V84; Ligand: UDP; Similar sites found with APoc: 8
This union binding pocket(no: 2) in the query (biounit: 1v84.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 4H69 10Y 1.03093
2 1LF9 ACR 2.37154
3 2OEM 1AE 3.95257
4 4I3V NAD 4.34783
5 3A5Z KAA 6.71937
6 4NTD FAD 6.71937
7 2FKA BEF 10.8527
8 3EM0 CHD 13.0435
Pocket No.: 3; Query (leader) PDB : 1V84; Ligand: GAL NAG; Similar sites found with APoc: 10
This union binding pocket(no: 3) in the query (biounit: 1v84.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 5NB7 8NQ 0.869565
2 4PZ2 NAD 1.97628
3 4C5N ACP 3.95257
4 4PXL NAD 4.74308
5 1O9J NAD 5.13834
6 5ML3 DL3 5.36913
7 5L13 6ZE 5.5336
8 6B5G NAD 8.69565
9 6B5G CQY 8.69565
10 4EMI FAD 13.834
Pocket No.: 4; Query (leader) PDB : 1V84; Ligand: GAL NDG; Similar sites found with APoc: 30
This union binding pocket(no: 4) in the query (biounit: 1v84.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
1 4EHU ANP None
2 5YSI NCA 1.31579
3 4PZ2 NAD 1.97628
4 5MUY MGT 2.37154
5 2YVK MRU 2.7668
6 6FP4 FAD 3.16206
7 3F4F UMP 3.59281
8 3RIY NAD 3.95257
9 4C5N ACP 3.95257
10 4C5N PXL 3.95257
11 1I9Z 2IP 4.74308
12 4PXL NAD 4.74308
13 4OOP DUP 4.81928
14 1O9J NAD 5.13834
15 5L13 6ZE 5.5336
16 1UPA TPP 5.5336
17 3DAG FEG 5.92885
18 4I8P NAD 6.32411
19 4M52 FAD 6.71937
20 4NTD FAD 6.71937
21 1GY8 NAD 7.90514
22 6B5G NAD 8.69565
23 6B5G CQY 8.69565
24 4Y9J FAD 9.48617
25 4FE2 ADP 10.2767
26 4PVR ASP 10.6719
27 4EMI FAD 13.834
28 5EYP GDP 19.7628
29 4LNU GDP 19.7628
30 5EYK 5U5 27.1186
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