Receptor
PDB id Resolution Class Description Source Keywords
1VG9 2.5 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH C-TERMINALLY TRUNCATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BINDING/PROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO THE MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISEASE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:2302;
D:2300;
F:2305;
H:2303;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
K B:3303;
D:3305;
F:3307;
H:3309;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
39.098 K [K+]
MG B:2307;
D:2301;
F:2306;
H:2304;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
P33 B:3302;
D:3304;
F:3306;
H:3308;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
326.383 C14 H30 O8 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VG9 2.5 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH C-TERMINALLY TRUNCATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BINDING/PROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO THE MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISEASE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 199 families.
1 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 166 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 141 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found: 387
This union binding pocket(no: 1) in the query (biounit: 1vg9.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4PX9 ADP 0.00001788 0.50311 2.05479
2 2VF7 ADP 0.0001409 0.48434 2.16216
3 2ZPA ADP 0.00004166 0.46248 2.46154
4 2HF9 GSP 0.00000001951 0.60887 2.65487
5 3WYA GDP 0.00000000006599 0.78783 2.76498
6 5TSH ANP 0.00001169 0.52264 3.07692
7 5TSH ADP 0.000004529 0.50195 3.07692
8 1NST A3P 0.002314 0.40428 3.07692
9 2WHX ADP 0.00003431 0.54075 3.24324
10 5XDR ADP 0.00003674 0.51107 3.24324
11 5M7P ADP 0.000101 0.50167 3.24324
12 1QF5 RPL 0.009867 0.46767 3.24826
13 2J5V PCA 0.005019 0.43648 3.26975
14 5GJC ATP 0.0002103 0.46761 3.39367
15 1T5C ADP 0.000000589 0.64218 3.4384
16 2D2F ADP 0.00003188 0.54237 3.6
17 3MD0 GDP 0.00000000005149 0.8076 3.78378
18 2IS6 ADP 0.00008133 0.50182 3.78378
19 3IO3 ADP 0.00001093 0.48926 3.78378
20 5G41 AP5 0.001917 0.47363 3.78378
21 2FAH GDP 0.0002208 0.45741 3.78378
22 3RC3 ANP 0.001973 0.44201 3.78378
23 3FWY ADP 0.00000239 0.52418 3.82166
24 1H65 GDP 0.0000006512 0.51292 4.07407
25 5K5Z ANP 0.00009496 0.42432 4.14013
26 1GOJ ADP 0.00000005258 0.69786 4.22535
27 3FKQ ATP 0.000008132 0.50359 4.28954
28 2DPY ADP 0.00001328 0.55525 4.32432
29 1V8K ANP 0.00001357 0.53833 4.32432
30 3VX3 ADP 0.0000102 0.48753 4.32432
31 2D7D ADP 0.0002906 0.47585 4.32432
32 2GK6 ADP 0.0005586 0.47479 4.32432
33 2GDJ ANP 0.0003714 0.47084 4.32432
34 1Z6T ADP 0.00008464 0.46051 4.32432
35 2JLR ANP 0.0003539 0.44503 4.32432
36 5EP2 AZU 0.01323 0.40381 4.32432
37 3FYH ADP 0.0002722 0.40183 4.32432
38 3EC1 GDP 0.0000000003415 0.74145 4.33604
39 3DKP ADP 0.0001062 0.49639 4.4898
40 2XT3 ADP 0.0000001187 0.67426 4.65116
41 4QM7 GTP 0.000016 0.53498 4.67836
42 1WDT GTP 0.0000002947 0.54863 4.86486
43 3BFV ADP 0.00000953 0.54554 4.86486
44 1G3Q ADP 0.00001668 0.52677 4.86486
45 1XKV ATP 0.00001343 0.51656 4.86486
46 4R43 GDP 0.00005384 0.51023 4.86486
47 1ION ADP 0.00003685 0.49934 4.86486
48 1YTM ATP 0.0001138 0.44275 4.86486
49 4A4Z ANP 0.002198 0.43456 4.86486
50 4PJ3 ANP 0.002523 0.41261 4.86486
51 2NCD ADP 0.0000009574 0.61963 5
52 1NJF ADP 0.000009883 0.48705 5.2
53 1NJF AGS 0.00002448 0.45652 5.2
54 4KBF AMP 0.0009088 0.45826 5.20548
55 2IYL GDP 0.0000001338 0.63254 5.28169
56 2CHG ANP 0.0001289 0.45545 5.30973
57 4E03 ADP 0.00002847 0.51614 5.33981
58 2HCJ GDP 0.00000000001806 0.82953 5.40541
59 3U6B GDP 0.00000000002788 0.82044 5.40541
60 4P3Y GDP 0.00000000002926 0.81943 5.40541
61 1D8T GDP 0.00000000004631 0.79505 5.40541
62 4G5G GDP 0.00000000007081 0.78639 5.40541
63 3U6K GDP 0.0000000001009 0.77916 5.40541
64 5JBQ GDP 0.0000000000813 0.75053 5.40541
65 2BVN GNP 0.0000000005124 0.68878 5.40541
66 1D2E GDP 0.0000000008231 0.6793 5.40541
67 4PC3 GDP 0.000000001555 0.66964 5.40541
68 5L3V GDP 0.000000257 0.59283 5.40541
69 4V03 ADP 0.000008464 0.54351 5.40541
70 2C04 GCP 0.000004318 0.51818 5.40541
71 5I0H ADP BEF 0.00006938 0.51174 5.40541
72 3ZFD ANP 0.00001929 0.51042 5.40541
73 1FP6 ADP 0.00001063 0.50938 5.40541
74 2FSH ANP 0.0005511 0.46873 5.40541
75 1P9B GDP 0.00008465 0.46504 5.40541
76 1NY5 ADP 0.0001313 0.45755 5.40541
77 5J1J ANP 0.00001563 0.45566 5.40541
78 2O0J ADP 0.005434 0.42579 5.40541
79 1J99 AND 0.01294 0.41991 5.40541
80 4P32 ADP 0.0001996 0.41835 5.40541
81 1OYY AGS 0.007882 0.40846 5.40541
82 2I4I AMP 0.002527 0.40741 5.40541
83 2BEK ATP 0.0002752 0.4211 5.53846
84 2ZTS ADP 0.00009273 0.44863 5.57769
85 3IUY AMP 0.001164 0.44754 5.70175
86 2IL4 COA 0.003053 0.40658 5.82524
87 1KK1 GNP 0.0000000006393 0.75486 5.94595
88 5KSZ GCP 0.0000002221 0.59665 5.94595
89 1YQT ADP 0.00000353 0.59239 5.94595
90 1XMV ADP 0.0001526 0.48276 5.94595
91 1W5T ADP 0.0007838 0.4228 5.94595
92 1W5T ANP 0.0004515 0.41663 5.94595
93 4IDN GNP 0.0002941 0.41653 5.94595
94 4AG5 ADP 0.000001688 0.60889 6.37755
95 1BG2 ADP 0.0000003743 0.64947 6.46154
96 2RCN GDP 0.000000000001183 0.86984 6.48649
97 4LC1 GDP 0.0000000005688 0.7439 6.48649
98 1TQ4 GDP 0.0000000002577 0.64332 6.48649
99 4P4T GDP 0.0000001001 0.56844 6.48649
100 3VMF GTP 0.000000003325 0.55516 6.48649
101 3WXM GTP 0.000000004024 0.55349 6.48649
102 2XTZ GSP 0.000000009102 0.54373 6.48649
103 3TBK ANP 0.00009555 0.51279 6.48649
104 1CR1 TTP 0.00007126 0.51119 6.48649
105 1G41 ADP 0.00002163 0.50868 6.48649
106 1IHU AF3 0.000003205 0.4857 6.48649
107 1IHU ADP 0.00000362 0.47457 6.48649
108 3FVQ ATP 0.0001637 0.43168 6.48649
109 3ITJ CIT 0.01465 0.41769 6.48649
110 3VM7 GLC 0.01333 0.40688 6.48649
111 4OHY ANP 0.0001558 0.4098 6.49652
112 4TTQ ATP 0.00006533 0.50629 6.97674
113 2IXE ATP 0.0002487 0.41754 7.01107
114 1RRC ADP 0.000003195 0.60125 7.02703
115 4YDS ATP 0.00001888 0.54768 7.02703
116 3UIE ANP 0.00001047 0.52165 7.02703
117 2OBM ADP 0.0001006 0.52138 7.02703
118 2KIN ADP 0.0000002599 0.51172 7.02703
119 4HSE ADP 0.00003695 0.51095 7.02703
120 1AZT GSP 0.00000002588 0.50568 7.02703
121 1R6B ADP 0.00005007 0.50491 7.02703
122 2CE7 ADP 0.00004837 0.49286 7.02703
123 2FNA ADP 0.00002851 0.44951 7.02703
124 1XX6 ADP 0.001383 0.44402 7.02703
125 3R96 ACO 0.02849 0.40691 7.02703
126 1B7T ADP 0.0001113 0.4776 7.05128
127 4RZ3 ADP 0.000005228 0.55928 7.11864
128 1KK8 BEF ADP 0.00005038 0.46926 7.19424
129 2X0K PPV 0.02311 0.40431 7.39645
130 4PPF FLC 0.000001303 0.63148 7.42857
131 3QXC ATP 0.0003231 0.40197 7.43802
132 3EWA ANP 0.00006773 0.50555 7.45342
133 1SQ5 ADP 0.00003643 0.51124 7.46753
134 3NHB ADP 0.000001709 0.6077 7.56757
135 1TAD GDP 0.00000002918 0.50282 7.56757
136 1TAD ALF 0.00000002918 0.50282 7.56757
137 5MZN ADP 0.0007298 0.46904 7.56757
138 5WRJ A3P 0.00173 0.45126 7.56757
139 2C9O ADP 0.00006534 0.44877 7.56757
140 5WRI A3P 0.001929 0.44539 7.56757
141 4LJ9 ACP 0.00025 0.47891 7.66962
142 4FCW ADP 0.0001708 0.48051 7.71704
143 5KSP GDP 0.00000005766 0.63946 7.89474
144 4WZ6 ATP 0.00001627 0.55672 7.93103
145 1CS4 GSP 0.00000004005 0.50925 8
146 3T34 GDP 0.000005225 0.47659 8.05556
147 4R2I ANP 0.0003686 0.48373 8.09524
148 4DCT GDP 0.00000000002671 0.79212 8.10811
149 2OG2 MLI 0.000001352 0.62848 8.10811
150 3B9Q MLI 0.000003875 0.601 8.10811
151 5LB3 ADP 0.00006113 0.51477 8.10811
152 4IHQ ADP 0.0001061 0.50322 8.10811
153 5LTJ ADP 0.00005753 0.50215 8.10811
154 4JLV ADP 0.0001428 0.49701 8.10811
155 2XAU ADP 0.00004992 0.49192 8.10811
156 5GVR LMR 0.00001809 0.4011 8.11966
157 1FQJ GDP 0.00000002283 0.55535 8.16327
158 1FQK GDP 0.00000006122 0.54333 8.16327
159 1OFH ADP 0.00008528 0.48358 8.3871
160 2W58 ADP 0.0000004387 0.65577 8.41584
161 1SKQ GDP 0.0000000006655 0.75402 8.64865
162 3P4X ADP 0.000004851 0.56782 8.64865
163 2Q2Y MKR 0.0004152 0.53027 8.64865
164 3EZ2 ADP 0.00006884 0.51229 8.64865
165 2QEN ADP 0.00003128 0.47965 8.64865
166 1IN4 ADP 0.00002381 0.47217 8.64865
167 3DZD ADP 0.0002076 0.45847 8.64865
168 4YS0 ADP 0.0004389 0.43378 8.64865
169 4ZNL BEF ADP 0.0003354 0.46709 8.75912
170 3IIJ ADP 0.00000312 0.56831 8.88889
171 2PL3 ADP 0.0001589 0.49477 8.8983
172 1G6O ADP 0.00005628 0.48969 9.09091
173 1VHT BA3 0.000325 0.45906 9.17431
174 1SVI GDP 0.00000000006844 0.80164 9.18919
175 1PUJ GNP 0.000000002456 0.66107 9.18919
176 3PQC GDP 0.000000008851 0.65629 9.18919
177 5L3S GNP 0.000001029 0.60612 9.18919
178 5L3W GDP 0.0000006614 0.59456 9.18919
179 3DEF GDP 0.000000196 0.58118 9.18919
180 1JWY GDP 0.0000002529 0.57966 9.18919
181 5IFS ADP 0.00007317 0.50031 9.18919
182 1JWY ADP 0.00008228 0.49503 9.18919
183 3B7G ANP 0.0001297 0.48598 9.18919
184 4QOS ADP 0.0001215 0.47547 9.18919
185 1FNN ADP 0.00005399 0.45847 9.18919
186 1JJV ATP 0.00003338 0.53919 9.2233
187 1U0J ADP 0.0001599 0.49464 9.3633
188 5VGR GDP 0.0001678 0.44953 9.51276
189 2Y65 ADP 0.000001013 0.62333 9.72973
190 4KVA GTP 0.000001497 0.40085 9.72973
191 5J1S ATP 0.0004368 0.40394 9.7561
192 4LPS GDP 0.00000003371 0.65013 9.91736
193 4CVN ADP 0.000003016 0.58714 9.94764
194 2PZE ATP 0.000002487 0.60473 10.0437
195 3ZIA ATP 0.00004874 0.50544 10.0719
196 3ZIA ADP 0.00004891 0.48275 10.0719
197 1F9V ADP 0.0000005065 0.63403 10.0865
198 1BO4 COA 0.003324 0.42611 10.119
199 4XVU ATP 0.00001611 0.54653 10.1695
200 2WOJ ADP ALF 0.00001801 0.433 10.1695
201 3CNL GNP 0.0000000004791 0.7609 10.2703
202 3LRE ADP 0.0000001087 0.68241 10.2703
203 5L3R GCP 0.0000006312 0.49455 10.2703
204 3Q9L ATP 0.00008556 0.46131 10.3846
205 3KTA AP5 0.000282 0.44933 10.4396
206 1G7C 5GP 0.00000001531 0.67675 10.6383
207 2X7I CIT 0.00324 0.42664 10.7143
208 4J0Q GDP 0.00000000005316 0.80693 10.8108
209 2VVG ADP 0.00000006156 0.69291 10.8108
210 4H1V GNP 0.0000002133 0.56924 10.8108
211 4ZG4 VO4 ADP 0.00006556 0.51741 10.8108
212 4IEE AGS 0.0002956 0.48178 10.8108
213 5FTB ANP 0.0001763 0.46859 10.8108
214 4QRH 0O2 0.001958 0.44315 10.8108
215 5FHD ADP ALF 0.0001044 0.439 10.8108
216 1NN5 2DT 0.0439 0.4156 10.8108
217 1M7G AV2 0.000001885 0.58761 11.3514
218 5IRR GSP 0.0000003121 0.52465 11.3514
219 2V7Q ATP 0.0000209 0.50914 11.3514
220 1W0J ADP 0.00002355 0.49649 11.3514
221 2V7Q ADP 0.0001466 0.4898 11.3514
222 1W0J ADP BEF 0.0003287 0.43185 11.3514
223 2CK3 ANP 0.0003678 0.43026 11.3514
224 2CK3 ADP 0.0003244 0.40988 11.3514
225 1M7G ADP 0.00004061 0.4048 11.3514
226 4BQS ADP 0.00001602 0.53495 11.3636
227 4BQS K2Q 0.0001162 0.52452 11.3636
228 2OFW ADX 0.0001143 0.52903 11.5385
229 2AWN ADP 0.00000001426 0.74923 11.8919
230 2QZ4 ADP 0.00002821 0.50365 11.8919
231 4XGU ADP 0.00003039 0.48049 11.8919
232 3ZQ6 ADP ALF 0.00001506 0.4334 11.8919
233 5MEX PAP 0.004415 0.42451 11.8919
234 1Y63 ADP 0.000002286 0.57465 11.9565
235 1YRB GDP 0.00000000003221 0.73722 12.4324
236 5CK5 GDP 0.0000000002121 0.71681 12.4324
237 4LYA ATP 0.00001555 0.52816 12.4324
238 1XP8 AGS 0.0001766 0.49257 12.4324
239 2ZJ5 ADP 0.008579 0.41868 12.4324
240 2VB6 ADP BEF 0.00009568 0.50956 12.973
241 4PFO ADP 0.0001537 0.50371 12.973
242 3BER AMP 0.0009519 0.45164 12.973
243 1K6M AGS 0.0001419 0.41645 12.973
244 3H4S ADP 0.0000002595 0.65532 13.4715
245 4FRZ ADP 0.0000006031 0.63013 13.4715
246 5HCN GCP 0.0000000002798 0.7454 13.5135
247 2ZR9 DTP 0.00005264 0.51069 13.5135
248 3RLF ANP 0.0001131 0.42161 13.5135
249 5N69 ADP 0.0001125 0.46686 13.5678
250 3QF7 ANP 0.0001812 0.43802 14
251 4D81 ADP 0.00003601 0.51739 14.0541
252 1R0X ATP 0.0003105 0.48074 14.0541
253 1DAR GDP 0.0000000008661 0.73532 14.5946
254 1LVG ADP 0.0000004581 0.62768 14.5946
255 2C77 GNP 0.000000002138 0.61358 14.5946
256 2C78 GNP 0.000000001157 0.60786 14.5946
257 4WOP CTP 0.0003563 0.42406 15.1111
258 3QKT ANP 0.0002101 0.40565 15.1351
259 3A4M ADP 0.000001675 0.59979 15.3846
260 2QN6 GDP 0.00000000002805 0.82031 15.6757
261 4RD0 GDP 0.0000000003416 0.76628 15.6757
262 4KFU ACP 0.000006863 0.57585 16.0377
263 3E70 GDP 0.0000002935 0.6071 16.2162
264 4XTR ATP 0.00001511 0.54785 16.2162
265 4XTR ADP 0.00001052 0.54785 16.2162
266 5H56 ADP 0.00005542 0.53254 16.2162
267 5H56 TYD 0.00005542 0.53254 16.2162
268 5HR5 ADP 0.0001186 0.49593 16.2162
269 2OZE AGS 0.00008137 0.45278 16.2162
270 2CBZ ATP 0.000001051 0.63117 16.7568
271 3DC4 ADP 0.000002519 0.59101 16.7568
272 3AB3 GDP 0.00000001937 0.58198 16.7568
273 1ZCB GDP 0.00000004695 0.52558 16.7568
274 3CX8 GSP 0.00000002648 0.50485 16.7568
275 4GOX A3P 0.0002676 0.41257 16.7568
276 3BOS CDP 0.0002233 0.48122 16.9421
277 1W7J ADP BEF 0.0000517 0.4686 17.2973
278 5H67 ATP 0.003653 0.41957 18.0851
279 4B47 GDP 0.000000000003949 0.86136 19.4595
280 1GXU 2HP 0.00007125 0.51007 19.7802
281 4HI0 GDP 0.00000002629 0.57619 20
282 3KJI ADP 0.000001862 0.5406 20.0787
283 2X77 GDP 0.00000000009883 0.7661 20.5405
284 1HTW ADP 0.00001882 0.52437 21.519
285 2FH5 GTP 0.00000000003155 0.67647 21.6216
286 1KSH GDP 0.00000000008119 0.6591 21.6216
287 3DOE GTP 0.0000000004591 0.60502 21.6216
288 3TK1 GDP 0.00000000001945 0.84428 22.7027
289 1MKY GDP 0.000000000005617 0.83807 22.7027
290 5I34 GDP 0.00002137 0.52184 22.7027
291 2ODE ALF GDP 0.00000002859 0.6914 23.1429
292 2XTN GTP 0.0000003022 0.51426 23.2432
293 3ZS9 ADP ALF 0.00001871 0.43287 23.6842
294 5BQ5 ADP BEF 0.00001537 0.51479 24.3243
295 1SVK ALF GDP 0.00000002184 0.49762 24.6459
296 3WY9 GDP 0.00000000001786 0.82976 25
297 2OM2 GDP 0.00000006261 0.56485 25.2308
298 4ZKD GDP 0.0000000009917 0.75704 25.9459
299 1BH2 GSP 0.00000006288 0.49454 26.0317
300 5GOE GDP 0.000000001508 0.68945 26.4865
301 5KDO GDP 0.00000008454 0.55853 27.027
302 1GOT GDP 0.00000006473 0.55299 27.3973
303 4ZI2 GNP 0.0000000003881 0.62069 27.8947
304 1Y3A GDP 0.00000004589 0.54641 27.9635
305 3H86 AP5 0.04259 0.43505 28.125
306 4GOJ GNP 0.0000000003077 0.62419 28.5714
307 1G7S GDP 0.0000000003887 0.73887 28.6486
308 5M04 GDP 0.00000000009812 0.72956 28.6486
309 1WF3 GNP 0.000000002384 0.54395 28.6486
310 5IRN ADP 0.00001633 0.53334 29.1892
311 3AQ4 GDP 0.0000000004605 0.7355 29.3478
312 5MVR ADP 0.00003103 0.50505 30.2469
313 2A5F GTP 0.000000003045 0.56859 30.2857
314 1FZQ GDP 0.00000000007704 0.78467 30.3867
315 4KAX GTP 0.00000000105 0.60865 30.7692
316 4TMZ GSP 0.0000000006646 0.59811 31.3514
317 3PCR GTP 0.000000001535 0.58906 31.4815
318 2W83 GTP 0.000000001302 0.59222 31.5152
319 4YLG GDP 0.000000000227 0.76309 31.7919
320 1KO8 6PG 0.00005293 0.45867 32
321 5DI3 GNP 0.0000000002036 0.63195 32.4324
322 4M9Q GNP 0.0000000002467 0.62795 32.4324
323 3N5C GDP 0.000000000268 0.75924 32.716
324 2QTV GNP 0.00000001794 0.54796 33.5329
325 5KUT GDP 0.0000000009212 0.72171 34.0541
326 2J59 GTP 0.000000001345 0.59085 34.3373
327 2WKQ GTP 0.0000000004561 0.6061 34.5946
328 1E96 GTP 0.0000000006582 0.57537 34.5946
329 1MH1 GNP 0.0000000002706 0.5725 34.5946
330 1G4U GDP 0.0000000005922 0.64861 34.7826
331 1I4D GDP 0.00000000001055 0.8408 35.1351
332 3SBD GNP 0.000000001207 0.56896 35.1351
333 1GP2 GDP 0.00000006085 0.54274 35.2113
334 2ZEJ GDP 0.000000003703 0.54181 35.3261
335 1RYH GNP 0.00000000007518 0.74567 36.2162
336 1GWN GTP 0.000000001943 0.61747 36.2162
337 1NF3 GNP 0.000000001956 0.56179 36.2162
338 1UPT GTP 0.0000000004129 0.61798 36.2573
339 1HE1 GDP 0.0000000002258 0.64527 36.3636
340 1HE1 AF3 0.01869 0.40267 36.3636
341 1M7B GTP 0.000000000671 0.63172 36.413
342 2FJU GSP 0.0000000002139 0.64725 36.5169
343 4DID GDP 0.00000000006517 0.77438 36.7568
344 2NGR GDP 0.00000000008838 0.76832 36.7568
345 2WMO GTP 0.000000000662 0.7041 36.7568
346 1GRN GDP 0.0000000001382 0.68904 36.7568
347 1A4R GNH 0.0000000001824 0.68672 36.7568
348 1A4R GDP 0.0000000001645 0.6689 36.7568
349 4ITR GDP 0.0000000003531 0.65533 36.7568
350 4V0K GDP 0.000000001273 0.57527 37.2781
351 5EE5 GTP 0.00000000008653 0.79462 37.4269
352 4YC7 GNP 0.0000000003215 0.76753 37.5691
353 5FG3 GDP 0.000000000007488 0.7734 37.8378
354 4NCN GTP 0.0000000004464 0.60277 37.8378
355 2GJ8 ALF GDP 0.000000001849 0.55166 38.3721
356 3REF GDP 0.000000002504 0.59295 38.9189
357 1MR3 G3D 0.0000000002101 0.7511 40.3315
358 3T1O GDP 0.00000001715 0.64442 40.5405
359 3T12 GDP ALF 0.00000001948 0.5653 40.5405
360 4BAS GNP 0.00000003264 0.55669 40.5405
361 2W2X GSP 0.0000000003435 0.64176 43.7838
362 1DS6 GDP 0.000000000008662 0.82923 44.3243
363 2CJW GDP 0.0000000000003529 0.8945 44.8649
364 3T5G GDP 0.000000000002136 0.84776 45.3039
365 1KMQ GNP 0.000000001392 0.59313 45.6522
366 3Q72 GNP 0.000000000001709 0.87889 45.7831
367 1OW3 GDP 0.000000000331 0.75543 45.9459
368 5HPY GDP 0.0000000003804 0.75261 45.9459
369 2GCO GNP 0.0000000003468 0.67646 45.9459
370 5JCP GDP ALF 0.000000002151 0.64475 45.9459
371 2GCN GDP 0.0000000001925 0.63478 45.9459
372 1XTQ GDP 0.0000000000148 0.65152 46.3277
373 4D0N GDP 0.00000000003171 0.80277 46.4865
374 3LXR GDP 0.0000000001079 0.73993 46.4865
375 2HT6 GDP 0.0000000000002555 0.91869 46.5517
376 4XOI GTP 0.000000001601 0.74093 46.6667
377 4XSH GSP 0.0000000001994 0.66648 46.9274
378 2J0V GDP 0.00000000003625 0.78604 47.027
379 1CXZ GSP 0.000000001165 0.61066 47.2527
380 1TX4 ALF GDP 0.000000001275 0.59473 47.4576
381 5IRC GDP 0.0000000186 0.66608 47.5676
382 4U5X GNP 0.0000000005966 0.64826 47.7528
383 3Q85 GNP 0.0000000000004545 0.88934 48.5207
384 3M1I GTP 0.00000000004033 0.60129 49.1892
385 3WYF GTP 0.00000000003668 0.59007 49.1892
386 5UQW GDP 0.000000000003359 0.8695 49.2063
387 3E5H GNP 0.00000000004459 0.61089 49.4382
388 3WYG GTP 0.00000000006676 0.58417 50
Pocket No.: 2; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found: 14
This union binding pocket(no: 2) in the query (biounit: 1vg9.bio1) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1UJ2 ADP 0.0003128 0.40042 2.77778
2 3BFX A3P 0.003196 0.40608 4.86486
3 1T3D CYS 0.00501 0.43215 5.19031
4 1X6V ADP 0.000159 0.40169 5.40541
5 4IOK XPO 0.0009249 0.40159 5.94595
6 2WZF BGC 0.006937 0.42737 6.85714
7 5E5U MLI 0.01274 0.41056 9.04523
8 2B8W ALF 5GP 0.0008415 0.40035 9.45122
9 4TQK NAG 0.01656 0.40747 10.8108
10 5MEX SZZ 0.01208 0.41848 11.8919
11 4B1M FRU FRU 0.01708 0.40556 12.973
12 1QHG ATP 0.007561 0.40172 14.5946
13 4OI4 ATP 0.0006413 0.41161 15.6522
14 5HR5 FLC 0.01501 0.40837 16.2162
Pocket No.: 3; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found: 3
This union binding pocket(no: 3) in the query (biounit: 1vg9.bio4) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4I9B 1KA 0.04674 0.4006 10.8108
2 1QHH ATP 0.006485 0.40813 17.3653
3 2VOH CIT 0.01701 0.40004 19.1083
Pocket No.: 4; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found: 4
This union binding pocket(no: 4) in the query (biounit: 1vg9.bio3) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3L6C MLI 0.01804 0.40213 5.30973
2 1OS1 ATP 0.0001833 0.40065 7.03704
3 1A8S PPI 0.02207 0.40277 11.3514
4 1F2U ATP 0.0003579 0.4007 18.9189
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