Receptor
PDB id Resolution Class Description Source Keywords
1VKF 1.65 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A GLYCEROL UPTAKE OPERON ANTITERMINATOR PROTEIN (TM1436) FROM THERMOTOGA MARITIMA MSB8 AT 1.65 A RE THERMOTOGA MARITIMA GLYCEROL UPTAKE OPERON ANTITERMINATOR-RELATED PROTEIN STRUCGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI TRANSCRIPTION
Ref.: CRYSTAL STRUCTURE OF GLYCEROL UPTAKE OPERON ANTITERMINATOR-RELATED PROTEIN (TM1436) FROM THERMO MARITIMA AT 1.65 A RESOLUTION TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CIT A:501;
C:502;
D:503;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
192.124 C6 H8 O7 C(C(=...
PO4 B:401;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VKF 1.65 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A GLYCEROL UPTAKE OPERON ANTITERMINATOR PROTEIN (TM1436) FROM THERMOTOGA MARITIMA MSB8 AT 1.65 A RE THERMOTOGA MARITIMA GLYCEROL UPTAKE OPERON ANTITERMINATOR-RELATED PROTEIN STRUCGENOMICS JOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTESTRUCTURE INITIATIVE PSI TRANSCRIPTION
Ref.: CRYSTAL STRUCTURE OF GLYCEROL UPTAKE OPERON ANTITERMINATOR-RELATED PROTEIN (TM1436) FROM THERMO MARITIMA AT 1.65 A RESOLUTION TO BE PUBLISHED
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1VKF - CIT C6 H8 O7 C(C(=O)O)C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 1VKF - CIT C6 H8 O7 C(C(=O)O)C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1VKF - CIT C6 H8 O7 C(C(=O)O)C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CIT; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 CIT 1 1
2 7QD 0.653846 0.958333
3 HCA 0.576923 0.884615
4 MAH 0.44 0.807692
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VKF; Ligand: CIT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1vkf.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1VKF; Ligand: CIT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1vkf.bio4) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1VKF; Ligand: CIT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1vkf.bio3) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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