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Receptor
PDB id Resolution Class Description Source Keywords
1X7D 1.6 Å EC: 4.3.1.12 CRYSTAL STRUCTURE ANALYSIS OF ORNITHINE CYCLODEAMINASE COMPL NAD AND ORNITHINE TO 1.6 ANGSTROMS PSEUDOMONAS PUTIDA DEAMINASE BINDS NAD+ BINDS L-ORNITHINE BINDS L-PROLINE 2BUNDLE BETA BARREL ROSSMANN FOLD LYASE
Ref.: ORNITHINE CYCLODEAMINASE: STRUCTURE, MECHANISM OF A AND IMPLICATIONS FOR THE U-CRYSTALLIN FAMILY BIOCHEMISTRY V. 43 13883 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MES B:3158;
Invalid;
none;
submit data
195.237 C6 H13 N O4 S C1COC...
MPD A:1401;
A:1402;
A:1403;
A:1404;
B:1405;
B:1406;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
NA A:1501;
B:1502;
Part of Protein;
Part of Protein;
none;
none;
submit data
22.99 Na [Na+]
NAD A:1302;
B:1301;
Valid;
Valid;
none;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
ORN A:1101;
A:1102;
Valid;
Valid;
none;
none;
submit data
132.161 C5 H12 N2 O2 C(C[C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1X7D 1.6 Å EC: 4.3.1.12 CRYSTAL STRUCTURE ANALYSIS OF ORNITHINE CYCLODEAMINASE COMPL NAD AND ORNITHINE TO 1.6 ANGSTROMS PSEUDOMONAS PUTIDA DEAMINASE BINDS NAD+ BINDS L-ORNITHINE BINDS L-PROLINE 2BUNDLE BETA BARREL ROSSMANN FOLD LYASE
Ref.: ORNITHINE CYCLODEAMINASE: STRUCTURE, MECHANISM OF A AND IMPLICATIONS FOR THE U-CRYSTALLIN FAMILY BIOCHEMISTRY V. 43 13883 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1X7D - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1U7H - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1X7D - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1U7H - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1X7D - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1U7H - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAD; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NHD 0.821429 0.972222
3 NAP 0.811966 0.986111
4 NFD 0.791304 0.946667
5 NXX 0.765766 0.972603
6 DND 0.765766 0.972603
7 AMP NAD 0.74359 0.972222
8 ZID 0.737705 0.986111
9 NAQ 0.729508 0.934211
10 NAE 0.721311 0.959459
11 NA0 0.712 0.972603
12 TAP 0.704 0.921053
13 NDE 0.689922 0.972603
14 NAJ 0.683333 0.972222
15 NDC 0.679389 0.934211
16 NDO 0.674603 0.958904
17 N01 0.656 0.972222
18 CNA 0.642276 0.972603
19 NBP 0.621212 0.922078
20 8ID 0.609756 0.922078
21 A2D 0.576923 0.958333
22 ADP 0.575472 0.931507
23 NGD 0.574803 0.922078
24 BA3 0.566038 0.958333
25 M33 0.564815 0.918919
26 ADP PO3 0.563636 0.957747
27 B4P 0.560748 0.958333
28 AP5 0.560748 0.958333
29 AN2 0.555556 0.918919
30 AT4 0.555556 0.894737
31 GAP 0.553571 0.932432
32 OOB 0.551724 0.972222
33 CA0 0.550459 0.932432
34 9JJ 0.546053 0.898734
35 HEJ 0.545455 0.931507
36 ACP 0.545455 0.906667
37 ATP 0.545455 0.931507
38 DQV 0.544 0.972222
39 ADP ALF 0.54386 0.883117
40 ALF ADP 0.54386 0.883117
41 DAL AMP 0.543103 0.945205
42 APR 0.540541 0.931507
43 AQP 0.540541 0.931507
44 AR6 0.540541 0.931507
45 5FA 0.540541 0.931507
46 ADP VO4 0.53913 0.945205
47 VO4 ADP 0.53913 0.945205
48 AD9 0.535714 0.906667
49 SAP 0.535714 0.883117
50 AGS 0.535714 0.883117
51 WAQ 0.533333 0.896104
52 ABM 0.53271 0.905405
53 DLL 0.529412 0.972222
54 00A 0.529412 0.921053
55 ACQ 0.526316 0.906667
56 NJP 0.526316 0.959459
57 ANP 0.526316 0.906667
58 OAD 0.525 0.932432
59 ADX 0.522523 0.839506
60 5AL 0.521739 0.945205
61 A1R 0.521008 0.871795
62 9SN 0.520325 0.909091
63 A 0.518868 0.930556
64 AMP 0.518868 0.930556
65 50T 0.517857 0.893333
66 ATF 0.517241 0.894737
67 1ZZ 0.516393 0.851852
68 3OD 0.516393 0.932432
69 SON 0.513514 0.92
70 PRX 0.513274 0.881579
71 6YZ 0.512821 0.906667
72 SRP 0.512821 0.92
73 9X8 0.512397 0.883117
74 ADP BMA 0.512397 0.932432
75 3UK 0.512397 0.958904
76 MYR AMP 0.512195 0.851852
77 NAJ PZO 0.510949 0.909091
78 NMN 0.509434 0.875
79 A3R 0.508333 0.871795
80 B5V 0.508197 0.945946
81 AMP DBH 0.507937 0.906667
82 A22 0.504202 0.945205
83 ATP A A A 0.504 0.971831
84 B5M 0.504 0.933333
85 FA5 0.504 0.945946
86 8QN 0.5 0.945205
87 NAX 0.496183 0.886076
88 TYR AMP 0.496063 0.933333
89 PR8 0.495935 0.8625
90 AMO 0.495868 0.92
91 ADQ 0.495868 0.932432
92 4AD 0.495868 0.933333
93 PAJ 0.495868 0.873418
94 A12 0.495495 0.894737
95 AP2 0.495495 0.894737
96 AHZ 0.492308 0.851852
97 YAP 0.492063 0.933333
98 FYA 0.491935 0.918919
99 AHX 0.491803 0.884615
100 4UU 0.488372 0.933333
101 5SV 0.487603 0.8375
102 TAT 0.487179 0.894737
103 T99 0.487179 0.894737
104 APC 0.486957 0.894737
105 SRA 0.486239 0.881579
106 6V0 0.484848 0.909091
107 NAI 0.484848 0.921053
108 GTA 0.484615 0.898734
109 A A 0.483871 0.958333
110 LAD 0.483871 0.873418
111 AU1 0.482456 0.906667
112 F2R 0.481752 0.831325
113 OMR 0.481203 0.841463
114 TXE 0.481203 0.921053
115 AF3 ADP 3PG 0.481203 0.873418
116 LAQ 0.480916 0.851852
117 G3A 0.48062 0.909091
118 B5Y 0.480315 0.933333
119 NB8 0.48 0.884615
120 TXA 0.48 0.92
121 BIS 0.48 0.871795
122 ME8 0.48 0.851852
123 PTJ 0.48 0.884615
124 139 0.477941 0.886076
125 LPA AMP 0.477273 0.851852
126 AFH 0.476923 0.873418
127 AR6 AR6 0.476923 0.958333
128 G5P 0.476923 0.909091
129 ARG AMP 0.476923 0.841463
130 25L 0.47619 0.945205
131 NAJ PYZ 0.475524 0.864198
132 25A 0.47541 0.958333
133 9ZA 0.47541 0.896104
134 9ZD 0.47541 0.896104
135 DZD 0.47482 0.897436
136 TXD 0.473684 0.921053
137 4UV 0.472868 0.933333
138 TYM 0.470149 0.945946
139 RBY 0.470085 0.894737
140 ADV 0.470085 0.894737
141 4TA 0.467626 0.864198
142 48N 0.466165 0.884615
143 XAH 0.465116 0.851852
144 4UW 0.462687 0.897436
145 M24 0.461538 0.886076
146 80F 0.460993 0.853659
147 IOT 0.459854 0.821429
148 T5A 0.456522 0.853659
149 EAD 0.455782 0.886076
150 MAP 0.455285 0.883117
151 GA7 0.454545 0.894737
152 BT5 0.453901 0.821429
153 A4P 0.452555 0.833333
154 UP5 0.451852 0.933333
155 PAP 0.445378 0.917808
156 4TC 0.445255 0.909091
157 AP0 0.445255 0.884615
158 YLP 0.444444 0.831325
159 P1H 0.443709 0.864198
160 AOC 0.442478 0.810811
161 Z5A 0.439189 0.833333
162 LMS 0.4375 0.817073
163 2A5 0.436975 0.857143
164 A G 0.43662 0.921053
165 G A A A 0.43662 0.909091
166 COD 0.43662 0.802326
167 ADJ 0.435714 0.841463
168 YLB 0.434783 0.831325
169 YLC 0.434783 0.851852
170 U A G G 0.433566 0.921053
171 ATR 0.433333 0.90411
172 7MD 0.432836 0.851852
173 8X1 0.432 0.764045
174 G5A 0.429752 0.790698
175 PO4 PO4 A A A A PO4 0.429688 0.943662
176 TAD 0.42963 0.873418
177 5AS 0.42735 0.770115
178 BTX 0.426573 0.831325
179 YLA 0.425532 0.831325
180 DSZ 0.425197 0.790698
181 NCN 0.424779 0.805556
182 UPA 0.42446 0.921053
183 8PZ 0.424242 0.811765
184 VMS 0.424 0.8
185 54H 0.424 0.8
186 9K8 0.423077 0.744444
187 N0B 0.422819 0.853659
188 6AD 0.422764 0.85
189 AYB 0.422535 0.821429
190 7D3 0.422414 0.844156
191 YLY 0.421769 0.821429
192 TSB 0.420635 0.809524
193 ODP 0.41958 0.922078
194 AV2 0.419355 0.855263
195 FB0 0.419355 0.775281
196 A5A 0.419355 0.819277
197 NNR 0.419048 0.739726
198 A A A 0.418605 0.918919
199 U A 0.417808 0.946667
200 649 0.417266 0.775281
201 NMN AMP PO4 0.416667 0.933333
202 SSA 0.416 0.790698
203 P5A 0.415385 0.755556
204 LSS 0.414062 0.772727
205 A2R 0.412698 0.918919
206 52H 0.412698 0.790698
207 JB6 0.412214 0.896104
208 5N5 0.411215 0.783784
209 YSA 0.410448 0.811765
210 53H 0.409449 0.790698
211 5CA 0.409449 0.790698
212 ITT 0.408333 0.878378
213 7D4 0.408333 0.844156
214 NA7 0.407692 0.894737
215 LEU LMS 0.407692 0.784091
216 5CD 0.407407 0.794521
217 0WD 0.406897 0.909091
218 A3P 0.40678 0.930556
219 HFD 0.406504 0.883117
220 AVV 0.40625 0.860759
221 RAB 0.40566 0.808219
222 XYA 0.40566 0.808219
223 ADN 0.40566 0.808219
224 FDA 0.405063 0.823529
225 GSU 0.40458 0.790698
226 7MC 0.404255 0.831325
227 NSS 0.403101 0.811765
228 6FA 0.402516 0.853659
229 PPS 0.4 0.817073
230 NVA LMS 0.4 0.784091
Ligand no: 2; Ligand: ORN; Similar ligands found: 57
No: Ligand ECFP6 Tc MDL keys Tc
1 ORN 1 1
2 DLY 0.714286 0.961538
3 API 0.653846 0.785714
4 DAB 0.615385 0.888889
5 NLE 0.566667 0.724138
6 2YH 0.564103 0.757576
7 11C 0.548387 0.724138
8 UN1 0.548387 0.724138
9 0TF 0.536585 0.714286
10 LYS 0.53125 0.925926
11 DHH 0.53125 0.7
12 NPI 0.515152 0.7
13 ONH 0.515152 0.735294
14 6CL 0.5 0.758621
15 26P 0.5 0.65625
16 HSE 0.5 0.733333
17 2RA 0.5 0.785714
18 CIR 0.485714 0.735294
19 NVA 0.482759 0.714286
20 HCS 0.482759 0.814815
21 MLY 0.472222 0.631579
22 ARG 0.472222 0.757576
23 2NP 0.472222 0.6
24 MLZ 0.472222 0.757576
25 DAR 0.472222 0.757576
26 CUW 0.470588 0.833333
27 2YJ 0.465116 0.714286
28 2YG 0.454545 0.714286
29 MSE 0.454545 0.636364
30 GLU 0.451613 0.689655
31 DGL 0.451613 0.689655
32 DGN 0.451613 0.677419
33 GGL 0.451613 0.689655
34 GLN 0.451613 0.677419
35 DSN 0.444444 0.689655
36 DBB 0.444444 0.666667
37 ABA 0.444444 0.666667
38 SER 0.444444 0.689655
39 5CT 0.44186 0.735294
40 WT2 0.439024 0.78125
41 HRG 0.435897 0.757576
42 ALY 0.435897 0.735294
43 ILO 0.435897 0.757576
44 AS2 0.433333 0.62069
45 DCY 0.428571 0.740741
46 CYS 0.428571 0.740741
47 C2N 0.428571 0.703704
48 NOT 0.425 0.705882
49 EXY 0.425 0.611111
50 ONL 0.424242 0.625
51 2FM 0.416667 0.677419
52 NMM 0.414634 0.714286
53 HAR 0.414634 0.625
54 VUR 0.414634 0.735294
55 4JK 0.414634 0.714286
56 MET 0.411765 0.65625
57 MED 0.411765 0.65625
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1X7D; Ligand: ORN; Similar sites found with APoc: 884
This union binding pocket(no: 1) in the query (biounit: 1x7d.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
1 2FR6 CTN None
2 1N1G BCP 1.14286
3 1GEG NAD 1.17188
4 1HDG NAD 1.20482
5 1CER NAD 1.20846
6 6B74 BEN 1.23457
7 1UXG NAD 1.2945
8 1UXG FUM 1.2945
9 1F8G NAD 1.42857
10 1GR0 NAD 1.42857
11 1L7E NAI 1.42857
12 1I9G SAM 1.42857
13 2V6G NAP 1.42857
14 3B6Z CO7 1.42857
15 1GY8 NAD 1.42857
16 2C5S AMP 1.42857
17 2ZXI FAD 1.42857
18 1Q9I FAD 1.42857
19 1Q9I TEO 1.42857
20 4R8L ASP 1.42857
21 5MLR GRQ 1.42857
22 5XWC NAP 1.42857
23 5XWC 2IT 1.42857
24 5XWC 8GL 1.42857
25 6DNT NAD 1.45349
26 4NTD FAD 1.47059
27 3LZW FAD 1.50602
28 3LZW NAP 1.50602
29 6GAS FAD 1.51057
30 1GAD NAD 1.51515
31 4TQG NDP 1.54799
32 5UAV NDP 1.5528
33 5UAV TFB 1.5528
34 4OBW SAM 1.55642
35 3KLJ FAD 1.55844
36 5LFV SIA GAL NAG 1.57729
37 4O1M NAD 1.5873
38 3G89 SAM 1.60643
39 3HAD NAD 1.62338
40 1UAY ADN 1.65289
41 1W6U NAP 1.65563
42 1W8D NAP 1.65563
43 1W73 NAP 1.65563
44 5OJL TXP 1.67785
45 4Q9N NAI 1.67785
46 4YCA NDP 1.70068
47 1CDO NAD 1.71429
48 4RF7 ARG 1.71429
49 1SAY PYR 1.71429
50 3A06 NDP 1.71429
51 2O4C NAD 1.71429
52 4WOE ADP 1.71429
53 4PIV NDP 1.71429
54 1TB4 PEJ 1.71429
55 2RGJ FAD 1.71429
56 2FR1 NDP 1.71429
57 3JQ3 ADP 1.71429
58 5GUD 2IT 1.71429
59 1FEC FAD 1.71429
60 5GUD NDP 1.71429
61 1RYI GOA 1.71429
62 4A0S NAP 1.71429
63 1RYI FAD 1.71429
64 1Q1R FAD 1.71429
65 5UR0 NAD 1.7192
66 4W6Z 8ID 1.72911
67 2GN4 NDP 1.74419
68 2GN4 UD1 1.74419
69 1RM4 NDP 1.78042
70 1DSS NAD 1.8018
71 4RVU NDP 1.80723
72 5Z75 NAD 1.83486
73 5BW4 SAM 1.87266
74 2AG8 NAP 1.90114
75 1E3W NAD 1.91571
76 1E6W NAD 1.92308
77 4ZRN NAD 1.92308
78 5E9W SAH 1.92308
79 5E8J SAH 1.92308
80 3WBF NAP 1.96721
81 3WBF API 1.96721
82 4Y9D NAI 1.96721
83 4RFR RHN 1.97044
84 2CDU ADP 2
85 2JHF NAD 2
86 1VKO NAD 2
87 5KVS NAP 2
88 4YT4 FE9 2
89 2GSD NAD 2
90 1RM0 NAI 2
91 4NBU NAI 2
92 2IPI AKY 2
93 2NAD NAD 2
94 4KP7 NAP 2
95 5KVS 6XR 2
96 4KP7 1UQ 2
97 4USQ FAD 2
98 2J8Z NAP 2
99 1RM0 D6P 2
100 1BZL GCG 2
101 1EWK GLU 2
102 1BZL FAD 2
103 5DF1 58X 2
104 5DF1 NAP 2
105 2CDU FAD 2
106 3AXB PRO 2
107 4BV6 FAD 2
108 2XVE FAD 2
109 3WQQ IB3 2
110 3WQQ NDP 2
111 4G5H UD7 2
112 4G5H NAP 2
113 3BF1 PAU 2.00803
114 3BF1 ADP 2.00803
115 1R37 NAD 2.01729
116 3B20 NAD 2.0649
117 3B1J NAD 2.0649
118 1IZC PYR 2.0649
119 4YAG NAI 2.07612
120 4L8V NAP 2.07715
121 1CF2 NAP 2.07715
122 1U25 IHS 2.07715
123 3C3Y SAH 2.1097
124 1PZG A3D 2.1148
125 2BQP GLC 2.13675
126 2CVQ NDP 2.14067
127 5U5N NAD 2.15054
128 5BSH PRO 2.16606
129 3CTY FAD 2.19436
130 5T9F NAP 2.21402
131 5T9F TYR 2.21402
132 3O9Z NAD 2.24359
133 3O9Z AKG 2.24359
134 5A7Y SAH 2.24359
135 2GDZ NAD 2.24719
136 3OIG NAD 2.25564
137 4D3F NAP 2.25806
138 1HYH NAD 2.26537
139 5NII FAD 2.26537
140 1D1T NAD 2.28571
141 3ICS ADP 2.28571
142 3ICT ADP 2.28571
143 1E3I CXF 2.28571
144 3NJ4 NAD 2.28571
145 1H2B NAJ 2.28571
146 3NJ4 AFX 2.28571
147 1SC6 NAD 2.28571
148 2Y6Q FAD 2.28571
149 3L9W GSH 2.28571
150 1N9G NAP 2.28571
151 4USR FAD 2.28571
152 3T31 DCQ 2.28571
153 3T31 FAD 2.28571
154 5O9W AKG 2.28571
155 3L9W AMP 2.28571
156 5EOW FAD 2.28571
157 2Y6Q I7T 2.28571
158 3AB1 FAD 2.28571
159 2FN1 PYR 2.28571
160 5NMX FAD 2.28571
161 3WV8 ATP 2.29358
162 1OC2 TDX 2.29885
163 1OC2 NAD 2.29885
164 5ZI2 NAD 2.31884
165 5ZI2 ADP 2.31884
166 1LLU NAD 2.33918
167 4ZSI GLP 2.33918
168 2PV7 NAD 2.34899
169 2DKN NAI 2.35294
170 5A04 NDP 2.35988
171 5A04 BGC 2.35988
172 2Q46 NAP 2.37154
173 4Z0H NAD 2.39521
174 2AOT SAH 2.39726
175 2CFC KPC 2.4
176 2CFC NAD 2.4
177 5ZWP GSH 2.40385
178 4IF4 BEF 2.40385
179 2EWM NAD 2.40964
180 3FPZ AHZ 2.45399
181 1NV8 MEQ 2.46479
182 1NV8 SAM 2.46479
183 5A9A UTP 2.46914
184 5L53 NAP 2.46914
185 1IUP ALQ 2.48227
186 2PK3 A2R 2.49221
187 5GWT NAD 2.51799
188 2IUW AKG 2.52101
189 1LDN NAD 2.53165
190 3GFB NAD 2.57143
191 1UP7 NAD 2.57143
192 3CIF NAD 2.57143
193 2D2I NAP 2.57143
194 1HKU NAD 2.57143
195 1GQ2 NAP 2.57143
196 5NUF NAD 2.57143
197 5NUE NAD 2.57143
198 3CIF G3H 2.57143
199 2FZW NAD 2.57143
200 3H5N ATP 2.57143
201 3DAG FEG 2.57143
202 2NPX NAD 2.57143
203 6A3J NAI 2.57143
204 3JU6 ANP 2.57143
205 5U8U FAD 2.57143
206 4EUE NAI 2.57143
207 2WPF FAD 2.57143
208 6A3J SOE 2.57143
209 1XHC FAD 2.57143
210 5TUK FAD 2.57143
211 2WPF WPF 2.57143
212 5E4R NAP 2.57143
213 1OFL NGK GCD 2.57143
214 3NYC IAR 2.57143
215 3NYC FAD 2.57143
216 5DNC ASN 2.57143
217 3GD4 NAD 2.57143
218 3GD4 FAD 2.57143
219 4BJZ P3A 2.57143
220 4BJZ FAD 2.57143
221 5LOG SAH 2.57511
222 5AYV NAP 2.589
223 5AYV KPL 2.589
224 1ORR NAD 2.59366
225 5D4V SAH 2.61194
226 4XDZ NDP 2.62391
227 5DP2 NAP 2.63158
228 2DTX BMA 2.65152
229 1ZEM NAD 2.67176
230 3RKR NAP 2.67176
231 3FPF MTA 2.68456
232 3FPF TNA 2.68456
233 2Q1W NAD 2.7027
234 2GLX NDP 2.71084
235 4IDC NDP 2.71084
236 4IDC 1XX 2.71084
237 5U5G NAP 2.71186
238 3GRU AMP 2.71186
239 2G30 ALA ALA PHE 2.71318
240 1H5R THM 2.73038
241 1B8U NAD 2.73556
242 1B8U OAA 2.73556
243 5OCM NAP 2.74914
244 3O03 NAP 2.74914
245 1J5P NAD 2.7668
246 2CVZ NDP 2.76817
247 1WP4 NDP 2.76817
248 3JYN NDP 2.76923
249 2VT3 ATP 2.7907
250 1F06 NDP 2.8125
251 1F06 2NP 2.8125
252 1LSH PLD 2.82132
253 3B6O TMP 2.83401
254 4D42 W0I 2.83688
255 4D42 NAP 2.83688
256 1BW9 NAD 2.85714
257 1BXG NAD 2.85714
258 1F8F NAD 2.85714
259 1C1X NAD 2.85714
260 1MV8 NAD 2.85714
261 1MUU NAD 2.85714
262 5VKT NAP 2.85714
263 1U3U NAD 2.85714
264 1U3U BNF 2.85714
265 2NVK NAP 2.85714
266 1E5Q NDP 2.85714
267 3OBT SLB 2.85714
268 4XYB NDP 2.85714
269 3WMX NAD 2.85714
270 6C4T NA7 2.85714
271 3SQP FAD 2.85714
272 1VQW FAD 2.85714
273 2GVC FAD 2.85714
274 5BJX NAD 2.85714
275 5BJX UDP 2.85714
276 1I2B NAD 2.85714
277 1I2B USQ 2.85714
278 1I2B UPG 2.85714
279 2GV8 FAD 2.85714
280 2GV8 NDP 2.85714
281 6C4M NAP 2.85714
282 4OOE NDP 2.85714
283 4OOE FOM 2.85714
284 2GZ3 NAP 2.85714
285 6FXR AKG 2.85714
286 1H82 GZZ 2.85714
287 3VSV XYP 2.85714
288 1H82 FAD 2.85714
289 1HYE NAP 2.8754
290 1BYG STU 2.8777
291 3TKA SAM 2.88184
292 5ZZ6 ADP 2.88462
293 5ZZ6 NAD 2.88462
294 5Z20 NAI 2.89855
295 1UI0 URA 2.92683
296 5A1T NAI 2.93255
297 5A1T OXM 2.93255
298 1ZH8 NAP 2.94118
299 1O6Z NAD 2.9703
300 4ITU NAI 2.97398
301 1XCL SAH 2.97872
302 5WQP NAP 2.99145
303 5WQP NCA 2.99145
304 6CEP NAD 2.99401
305 6CEP OXM 2.99401
306 5N6C NAD 3
307 3ZBQ GDP 3.003
308 5Z2F NAP 3.01887
309 6BWL NAD 3.04878
310 5Y8L HUI 3.05085
311 5Y8L NAD 3.05085
312 5KZD RCJ 3.07167
313 5N5D SAM 3.09735
314 4RDH AMP 3.125
315 4RDI ATP 3.125
316 3VV1 GAL FUC 3.125
317 2VHW NAI 3.14286
318 1U8X NAD 3.14286
319 5DN9 NAD 3.14286
320 4XQC NAD 3.14286
321 1DLJ UGA 3.14286
322 5MQ6 NDP 3.14286
323 4XQC 13D 3.14286
324 4HXY NDP 3.14286
325 3OJO NAD 3.14286
326 1Q0H NDP 3.14286
327 4EDF UPG 3.14286
328 4FXQ G9L 3.14286
329 1Q0H FOM 3.14286
330 1OBB NAD 3.14286
331 6AIN FAD 3.14286
332 5JCM NAD 3.14286
333 5JCM ISD 3.14286
334 5JCM FAD 3.14286
335 1DLJ NAI 3.14286
336 1SB8 UD2 3.14286
337 1CT9 GLN 3.14286
338 2E5V FAD 3.14286
339 3LU1 NAD 3.14286
340 5Z2L NDP 3.14286
341 4RSL FAD 3.14607
342 3BJE R1P 3.15186
343 3GGO NAI 3.18471
344 3GGO ENO 3.18471
345 5TWB FAD 3.19767
346 5KVA SAM 3.23741
347 4D79 ATP 3.26087
348 4XMF HSM 3.26087
349 3NGL NAP 3.26087
350 4K26 NDP 3.26087
351 5XVH NAP 3.26797
352 1EDO NAP 3.27869
353 1Z82 NDP 3.28358
354 5O42 9JW 3.28467
355 5O42 BGC 3.28467
356 5O42 NAD 3.28467
357 4MDH NAD 3.29341
358 1DRV A3D 3.2967
359 4KOA NDP 3.3033
360 5MDH NAD 3.3033
361 2BKA NDP 3.30579
362 1P77 ATR 3.30882
363 3FUU ADN 3.32103
364 5MIT NAP 3.36391
365 5MIT FAD 3.36391
366 5AHW CMP 3.40136
367 5GT9 NAP 3.42205
368 4RQU NAD 3.42857
369 5Z21 NAI 3.42857
370 1YS4 NAP 3.42857
371 5J5Z FAD 3.42857
372 1O0S NAI 3.42857
373 1Z45 NAD 3.42857
374 2C5A GDC 3.42857
375 2C5A NAD 3.42857
376 1X14 NAD 3.42857
377 2ZYI STE 3.42857
378 1U6R ADP 3.42857
379 3RNM FAD 3.42857
380 4KIB SAH 3.42857
381 1GET NAP 3.42857
382 1GET FAD 3.42857
383 3TWO NDP 3.44828
384 5XEG AKG 3.4632
385 2AHR NAP 3.4749
386 5EIN NAP 3.48837
387 4POO SAM 3.5
388 1FK8 NAD 3.50195
389 1P1C SAH 3.51759
390 1RP0 AHZ 3.52113
391 4Z3E GAL NGA GLA BGC GAL 3.53535
392 2NXE SAM 3.54331
393 4FN4 NAD 3.54331
394 1Z6Z NAP 3.5461
395 2VDF OCT 3.55731
396 2G5C NAD 3.55872
397 3V1Y NAD 3.56083
398 1R6D NAD 3.56083
399 1R6D DAU 3.56083
400 5AOV NAP 3.57143
401 4GKV NAD 3.57143
402 5AHO TLA 3.57143
403 6FOF LAT 3.57143
404 3MAG SAH 3.58306
405 1DIG NAP 3.59477
406 1DIG L37 3.59477
407 2BGM NAJ 3.59712
408 4DPL NAP 3.62117
409 4URF NAD 3.62903
410 2GCG NDP 3.63636
411 1LDM NAD 3.64742
412 1KYQ NAD 3.64964
413 5O4J SAH 3.64964
414 5O4J PJL 3.64964
415 5O4J 9KH 3.64964
416 5Y1G NAD 3.65854
417 3Q3C NAD 3.67893
418 4CQM NAP 3.68852
419 1NYT NAP 3.69004
420 1VJT NAD 3.71429
421 1EBF NAD 3.71429
422 5FI3 NAP 3.71429
423 1P31 EPU 3.71429
424 1YB5 NAP 3.71429
425 5BUK FAD 3.71429
426 1BXK NAD 3.71429
427 5X68 FAD 3.71429
428 5YJS SAL 3.71429
429 5YAP 8S0 3.71429
430 2JJQ SAH 3.71429
431 4TSK NDP 3.71429
432 5Y77 FAD 3.71429
433 5MZI FAD 3.71429
434 5MZI FYK 3.71429
435 2BDG PBZ 3.71429
436 5YAP NAI 3.71429
437 5KMS NAD 3.71429
438 3IHG FAD 3.71429
439 1P3D UMA 3.71429
440 6FP4 E1T 3.71429
441 2Z5Y HRM 3.71429
442 6FP4 FAD 3.71429
443 1KEW NAD 3.71429
444 5JAQ NAI 3.71429
445 3C1O NAP 3.73832
446 1IY8 NAD 3.74532
447 3ZNN FAD 3.7464
448 3ZNN 4WL 3.7464
449 5HWK BEZ 3.75
450 1JAY NAP 3.77358
451 1I36 NAP 3.78788
452 5TC4 NAD 3.79747
453 1U7T NAD 3.83142
454 1LUA NAP 3.83275
455 5KKA 6V0 3.84615
456 4XDY NAI 3.84615
457 4XB2 NDP 3.8806
458 4XB2 HSE 3.8806
459 1J0X NAD 3.91566
460 3WG3 A2G GAL NAG FUC 3.93258
461 1NM5 NAD 3.94089
462 3SJ7 NDP 3.96825
463 2HK9 ATR 4
464 1PL6 NAD 4
465 2HK9 NAP 4
466 5M67 ADE 4
467 5M67 NAD 4
468 6BII NAP 4
469 1PL6 572 4
470 5M67 3D1 4
471 1K3T BRZ 4
472 1YKJ FAD 4
473 1YKJ PHB 4
474 4Y1B NAP 4
475 2HK9 SKM 4
476 5HV7 RBL 4
477 2ZB4 5OP 4
478 2ZB4 NAP 4
479 1UWK NAD 4
480 1UWK URO 4
481 2X6T NAP 4
482 2H8H H8H 4
483 2R4J FAD 4
484 2R4J 13P 4
485 3VOT ADP 4
486 1WPQ NAD 4.01146
487 2YYY NAP 4.08163
488 3OA2 NAD 4.08805
489 3H8V ATP 4.10959
490 3DXY SAM 4.12844
491 1RJW ETF 4.12979
492 1UDB NAD 4.14201
493 1UDB UFG 4.14201
494 5X20 NAD 4.16667
495 4OCX MT1 4.16667
496 3QWB NDP 4.19162
497 9LDT NAD 4.21687
498 9LDB NAD 4.21687
499 4ZVV NAD 4.21687
500 4ZVV GN0 4.21687
501 1JG3 ADN 4.25532
502 2HJR APR 4.26829
503 1SOW NAD 4.26829
504 3U4C NDP 4.27046
505 1ZBQ NAD 4.28135
506 1LVL NAD 4.28571
507 6EL3 NAP 4.28571
508 3CGD FAD 4.28571
509 5VN0 NAI 4.28571
510 4J1Q NDP 4.28571
511 3CGD NAD 4.28571
512 3CGD COA 4.28571
513 3WIR BGC 4.28571
514 3E1T FAD 4.28571
515 5VN0 FAD 4.28571
516 1QO8 FAD 4.28571
517 2GMH FAD 4.28571
518 3SJU NDP 4.30108
519 2CUL FAD 4.31034
520 2DFV NAD 4.32277
521 2B4R NAD 4.34783
522 2B4R AES 4.34783
523 1GZ6 NAI 4.38871
524 6F9Q NAD 4.41176
525 3A4V NAD 4.4164
526 3A4V PYR 4.4164
527 6FMC DUE 4.43038
528 3AY6 NAI 4.46097
529 3B1F NAD 4.48276
530 2YY7 NAD 4.48718
531 1C3V NDP 4.4898
532 1EQ2 NAP 4.51613
533 1GZ4 ATP 4.57143
534 1Y8Q ATP 4.57143
535 3OND ADN 4.57143
536 3OND NAD 4.57143
537 3CBG SAH 4.57143
538 3FWN ATR 4.57143
539 3UOY FAD 4.57143
540 3UOY NAP 4.57143
541 4TM3 FAD 4.57143
542 5WP5 SAH 4.57143
543 4NBT NAD 4.58333
544 2OOR NAD 4.5977
545 5GZ6 NDP 4.60123
546 5GZ6 7C3 4.60123
547 5X9D 80F 4.60526
548 5N53 8NB 4.61538
549 1NFQ NAI 4.61538
550 2DC1 NAD 4.66102
551 5K4W THR 4.6729
552 5K4W NAI 4.6729
553 2F5Z FAD 4.6875
554 1LTH NAD 4.70219
555 5W3K 9TY 4.70588
556 5W3K NDP 4.70588
557 4YAC NAI 4.7138
558 3MCT SAH 4.7138
559 4O0L NDP 4.72727
560 5THQ NDP 4.77941
561 4FK7 P34 4.80349
562 3BAZ NAP 4.8048
563 1V6A TRE 4.81928
564 5A96 GTP 4.81928
565 3VPH NAD 4.83871
566 3VPH OXM 4.83871
567 1GUZ NAD 4.83871
568 2WD7 NAP 4.85075
569 6F3N ADN 4.85714
570 6F3M NAD 4.85714
571 6F3N NAD 4.85714
572 2CDC XYP 4.85714
573 2CDC XYS 4.85714
574 2CDC NAP 4.85714
575 3S5W FAD 4.85714
576 3S5W NAP 4.85714
577 1MO9 KPC 4.85714
578 1MO9 FAD 4.85714
579 4U8P UDP 4.85714
580 4U8P FDA 4.85714
581 5G4L NDP 4.8951
582 4HVA 4HV 4.90566
583 1HDR NAD 4.91803
584 5OFW 9TW 4.93274
585 1G0N PHH 4.947
586 1G0N NDP 4.947
587 3VY6 BGC BGC 4.96454
588 3QV1 NAD 5.04451
589 3CMC NAD 5.08982
590 3PDT ADP 5.09091
591 3OFK SAH 5.09259
592 1KOL NAD 5.14286
593 1LJ8 NAD 5.14286
594 5L2R MLA 5.14286
595 1M2W NAD 5.14286
596 3X0D SAH 5.14286
597 4K5S FAD 5.14286
598 1VEM GLC GLC 5.14286
599 5MRH Q9Z 5.14286
600 2QL9 CIT 5.15464
601 2GNB MAN 5.15873
602 2GN3 MMA 5.15873
603 1Q8O MAN MMA 5.15873
604 2PHT MAN MAN MAN 5.15873
605 2GNM MAN 5.15873
606 1Q8Q MAN MMA 5.15873
607 2GND MAN 5.15873
608 1Q8S MAN MMA 5.15873
609 2PHX MAN MAN 5.15873
610 2PHU MAN MAN 5.15873
611 1Q8V MAN MAN 5.15873
612 2GMM MAN MAN 5.15873
613 2GN3 MAN 5.15873
614 1GV0 NAD 5.16129
615 1L3I SAH 5.20833
616 3H4V NAP 5.20833
617 4MPO AMP 5.22876
618 1VM6 NAD 5.26316
619 3IX9 MTX 5.26316
620 1T26 NAI 5.2795
621 1T26 GBD 5.2795
622 1A5Z NAD 5.32915
623 2QZZ NAP 5.34591
624 2QZZ EMF 5.34591
625 3DUW SAH 5.38117
626 5ZI9 FLC 5.38462
627 2I3G NAP 5.39773
628 2DBZ NAP 5.42857
629 2YVF NAD 5.42857
630 2YVF FAD 5.42857
631 3SSO SAH 5.42857
632 5LUN OGA 5.42857
633 2WGH DTP 5.42857
634 5U97 PIT 5.42857
635 6FHO FAD 5.42857
636 3JQ8 NAP 5.55556
637 4CLO NAP 5.55556
638 3JQA NAP 5.55556
639 4CME NAP 5.55556
640 3JQ7 NAP 5.55556
641 5JDI NAP 5.55556
642 3BMQ NAP 5.55556
643 3BMO NAP 5.55556
644 3JQB NAP 5.55556
645 3JQ9 NAP 5.55556
646 5JCJ NAP 5.55556
647 4CMI NAP 5.55556
648 4CM8 NAP 5.55556
649 4CLR NAP 5.55556
650 3JQF NAP 5.55556
651 4CM4 NAP 5.55556
652 3JQG NAP 5.55556
653 4CM9 NAP 5.55556
654 5JDC NAP 5.55556
655 3BMN NAP 5.55556
656 5K6A NAP 5.55556
657 2PT9 S4M 5.60748
658 1VL8 NAP 5.61798
659 1EZ4 NAD 5.66038
660 2ZB3 NDP 5.66572
661 4OSP NAP 5.70342
662 1J49 NAD 5.70571
663 1PS9 NAP 5.71429
664 2F1K NAP 5.73477
665 6BQ6 TER 5.74018
666 2Q0L NAP 5.78778
667 4JK3 NAD 5.79151
668 1ONI BEZ 5.7971
669 3EGI ADP 5.82524
670 3VYW SAM 5.84416
671 2JK0 ASP 5.84615
672 2HNK SAH 5.85774
673 1ZGA SAH 5.88235
674 4RF2 NAP 5.88235
675 6AA8 NAD 5.96026
676 4V36 LYN 5.97015
677 3RFV NAI 5.99251
678 3RFV 15L 5.99251
679 1WDK NAD 6
680 3ETG NDP 6
681 3ETG GLU 6
682 4OPC PGT 6
683 4OPC FDA 6
684 1WVG APR 6
685 3ETG GTP 6
686 5DOZ NDP 6
687 3ZXE PGZ 6.01504
688 3WGT FAD 6.05187
689 3WGT QSC 6.05187
690 5CAE COA 6.07029
691 5CAE SIN 6.07029
692 1EJ0 SAM 6.11111
693 4KSY 1SY 6.19835
694 3L4S NAD 6.25
695 3L4S 3PG 6.25
696 2HMT NAI 6.25
697 5XWV 8H6 6.25
698 4B4U NAP 6.27063
699 1NVT NAP 6.27178
700 3WLE NAD 6.28571
701 1PJS NAD 6.28571
702 5O9F NAD 6.28571
703 5O9F 9ON 6.28571
704 5LD5 NAD 6.28571
705 2JHP SAH 6.28571
706 2B5W NAP 6.28571
707 3ORF NAD 6.28571
708 4EMI NAD 6.28571
709 5GSN NAP 6.28571
710 5GSN FAD 6.28571
711 1C0I FAD 6.28571
712 1C0I BE2 6.28571
713 5GSN MMZ 6.28571
714 5JCA NDP 6.28571
715 5JCA FAD 6.28571
716 4D04 FAD 6.28571
717 4D04 NAP 6.28571
718 4JDR FAD 6.28571
719 4ZA2 NAD 6.32411
720 1NVM NAD 6.41026
721 5N2I NAP 6.46552
722 3GEG NAD 6.47773
723 3NUG NAD 6.47773
724 4OJ8 AKG 6.48464
725 2IZ1 ATR 6.57143
726 5H81 NAP 6.57143
727 1X87 NAD 6.57143
728 5XNC MTA 6.57143
729 6C4N NAP 6.57143
730 3KB6 NAD 6.58683
731 5JE8 NAD 6.62252
732 2DT5 NAD 6.63507
733 6A46 DCM 6.64062
734 1P0F NAP 6.70241
735 4II2 ATP 6.74847
736 4H0I MMA 6.77291
737 2Y91 98J 6.79245
738 5TOW ADN 6.85714
739 5TOW NAI 6.85714
740 1QMG APX 6.85714
741 1YJQ NAP 6.93069
742 5EXK MET 6.94864
743 4UP3 NDP 7.00637
744 2DKH FAD 7.14286
745 5VNF VAL THR SER VAL VAL 7.14286
746 2EV9 NAP 7.22433
747 2EV9 SKM 7.22433
748 3TTM PUT 7.22543
749 4M37 SAH 7.28863
750 5G1N PAL 7.32484
751 2NU5 NAG 7.37705
752 2GUC MAN 7.37705
753 4NBW NAD 7.393
754 2O66 FLC 7.40741
755 5VAD PRO 7.42857
756 1FWV SGA MAG FUC 7.46269
757 2VYN NAD 7.48503
758 3SAO DBH 7.5
759 4XBA 5GP 7.5
760 3SAO NKN 7.5
761 3H9E NAD 7.51445
762 4CJX NAP 7.52351
763 4JJF N2I 7.55814
764 4JJF FE9 7.55814
765 4E5N NAD 7.57576
766 2NU8 COA 7.63889
767 1L1E SAH 7.66551
768 2RH4 EMO 7.71429
769 2UYN 2KT 7.75194
770 3OID NDP 7.75194
771 3QWI NAP 7.77778
772 3D3W NAP 7.78689
773 1PR9 NAP 7.78689
774 4XYM COA 7.82609
775 1LSS NAD 7.85714
776 5ODQ FAD 7.90378
777 1VI2 NAD 8
778 2RAB NAD 8
779 2RAB FAD 8
780 1JQ3 AAT 8.10811
781 5EJ2 NAD 8.11688
782 2XYQ SAH 8.19672
783 2Q2V NAD 8.23529
784 1V8B NAD 8.28571
785 1KEV NDP 8.28571
786 3LAD FAD 8.28571
787 1YQZ FAD 8.28571
788 1NPD NAD 8.33333
789 1U1I NAD 8.41837
790 3KIF GDL 8.49057
791 5EES NAP 8.50202
792 2JAP NDP 8.50202
793 4J36 FAD 8.57143
794 5TUF FAD 8.57143
795 4J36 1HR 8.57143
796 5TUF TDC 8.57143
797 2WSB NAD 8.66142
798 5L95 AMP 8.75
799 2IXB NAD 8.85714
800 2IXB A2G 8.85714
801 3FZG SAM 9
802 1QKQ MAN 9.15493
803 1WAP TRP 9.33333
804 4ZGS NAD 9.42857
805 5BVA FAD 9.42857
806 2RGO FAD 9.42857
807 1TH8 ADP 9.48276
808 4YSX FAD 9.57447
809 5T9E NAP 9.5941
810 1DCP HBI 9.61539
811 2Q1S NAI 9.71429
812 1GTE FAD 9.71429
813 4JBI NDP 9.72973
814 4PLT OXM 9.96979
815 4PLT NAI 9.96979
816 3ULK NDP 10
817 4TXI FAD 10
818 2BRY FAD 10
819 4J4H 1J1 10.0386
820 4J4H NAI 10.0386
821 3AD8 NAD 10.101
822 1ZQ9 SAM 10.1754
823 4BQS K2Q 10.2273
824 4R5M NAP 10.2857
825 4R5M 4NO 10.2857
826 2BOS GLA GAL GLC NBU 10.2941
827 2BOS GLA GAL GLC 10.2941
828 1YKF NAP 10.5714
829 3LXD FAD 10.5714
830 6A0S HSE 10.8434
831 6A0S NDP 10.8434
832 1O94 ADP 10.8571
833 1DJN ADP 10.8571
834 4B63 NAP 10.8571
835 4B63 ORN 10.8571
836 4B63 FAD 10.8571
837 4XZ3 COA 10.8696
838 4RYV ZEA 10.9677
839 4PLG NAI 11.0778
840 4PLG OXM 11.0778
841 2A92 NAI 11.215
842 2EUG URA 11.3537
843 2AG5 NAD 11.3821
844 5C5T AKG 11.4035
845 5YEC ATP 11.4706
846 4E13 NAD 11.6608
847 1V59 NAD 11.7143
848 1V59 FAD 11.7143
849 5EYY MDM 11.8367
850 4OM8 NAD 11.9741
851 1YQD NAP 12.2951
852 1VL0 NAI 12.3288
853 2ZJ1 ARJ 12.5714
854 2ZJ1 NAD 12.5714
855 6GNO XDI 12.5926
856 1DZK PRZ 12.7389
857 2YVJ NAI 12.844
858 3ABI NAD 12.8571
859 2QA1 FAD 12.8571
860 5HQ0 LZ9 13.0952
861 2QRK AMP 13.1429
862 2QX0 PH2 13.8365
863 2C29 DQH 13.9466
864 2C29 NAP 13.9466
865 1OFS SUC 14.5833
866 1JA9 NDP 14.5985
867 4B7X NAP 14.881
868 3A28 NAD 15.5039
869 2GAG NAD 16.1616
870 2O07 MTA 18.0921
871 2O07 SPD 18.0921
872 1FQJ ALF 19.0476
873 2P39 SCR 19.3548
874 1A78 TDG 19.403
875 4C4A SAH 20
876 4YRY NAD 21.7143
877 4M38 SAH 23.8095
878 5KEW 6SB 26.5957
879 4BVA NDP 33.4328
880 4BVA T3 33.4328
881 4MP8 NAD 36.2832
882 4MP8 MLI 36.2832
883 3UEC ALA ARG TPO LYS 37.6712
884 1OMO NAD 41.6149
Pocket No.: 2; Query (leader) PDB : 1X7D; Ligand: NAD; Similar sites found with APoc: 1068
This union binding pocket(no: 2) in the query (biounit: 1x7d.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 6BOC RIM None
2 6BOC EU7 None
3 1N1G BCP 1.14286
4 1GEG NAD 1.17188
5 1HDG NAD 1.20482
6 1CER NAD 1.20846
7 6B74 BEN 1.23457
8 1UXG NAD 1.2945
9 1UXG FUM 1.2945
10 3HVJ 705 1.35747
11 1F8G NAD 1.42857
12 1L7E NAI 1.42857
13 1GR0 NAD 1.42857
14 1I9G SAM 1.42857
15 4J56 FAD 1.42857
16 1ELI PYC 1.42857
17 5MLR NAP 1.42857
18 5MLR GRQ 1.42857
19 1Q9I TEO 1.42857
20 1Q9I FAD 1.42857
21 2V6G NAP 1.42857
22 5XWC 8GL 1.42857
23 5XWC NAP 1.42857
24 5XWC 2IT 1.42857
25 1GY8 NAD 1.42857
26 2C5S AMP 1.42857
27 3PNQ 2HA 1.42857
28 2ZXI FAD 1.42857
29 4R8L ASP 1.42857
30 2B9W FAD 1.42857
31 3B6Z CO7 1.42857
32 5A1S FLC 1.42857
33 6DNT NAD 1.45349
34 4NTD FAD 1.47059
35 3LZW NAP 1.50602
36 3LZW FAD 1.50602
37 6GAS FAD 1.51057
38 1GAD NAD 1.51515
39 4TQG NDP 1.54799
40 5UAV NDP 1.5528
41 5UAV TFB 1.5528
42 4OBW SAM