Receptor
PDB id Resolution Class Description Source Keywords
1XNG 1.7 Å EC: 6.3.1.5 CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM HELICOBACTER PYLORI HELICOBACTER PYLORI NH3-DEPENDENT NAD+ SYNTHETASE HELICOBACTER PYLORI AMIDOTRANSFERASE LIGASE
Ref.: CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM HELICOBACTER PYLORI PROTEINS V. 58 985 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ATP A:303;
B:304;
Valid;
Valid;
none;
none;
submit data
507.181 C10 H16 N5 O13 P3 c1nc(...
DND A:301;
B:302;
Valid;
Valid;
none;
none;
submit data
665.418 C21 H27 N6 O15 P2 c1cc(...
MG A:309;
B:308;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1XNG 1.7 Å EC: 6.3.1.5 CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM HELICOBACTER PYLORI HELICOBACTER PYLORI NH3-DEPENDENT NAD+ SYNTHETASE HELICOBACTER PYLORI AMIDOTRANSFERASE LIGASE
Ref.: CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM HELICOBACTER PYLORI PROTEINS V. 58 985 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1XNG - DND C21 H27 N6 O15 P2 c1cc(c[n+]....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1XNG - DND C21 H27 N6 O15 P2 c1cc(c[n+]....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1XNG - DND C21 H27 N6 O15 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ATP; Similar ligands found: 489
No: Ligand ECFP6 Tc MDL keys Tc
1 ATP 1 1
2 HEJ 1 1
3 AQP 0.985507 1
4 5FA 0.985507 1
5 AP5 0.927536 0.971831
6 B4P 0.927536 0.971831
7 BA3 0.913043 0.971831
8 ADP 0.9 1
9 A2D 0.884058 0.971831
10 AGS 0.84 0.945946
11 6YZ 0.833333 0.972222
12 AT4 0.810811 0.958904
13 AN2 0.810811 0.985915
14 25L 0.809524 0.985915
15 APR 0.802632 0.971831
16 AR6 0.802632 0.971831
17 M33 0.8 0.958333
18 ACQ 0.794872 0.972222
19 TAT 0.794872 0.958904
20 T99 0.794872 0.958904
21 AD9 0.792208 0.972222
22 ACP 0.789474 0.972222
23 A 0.788732 0.971429
24 AMP 0.788732 0.971429
25 ANP 0.772152 0.972222
26 HQG 0.756098 0.985915
27 CA0 0.753247 0.945205
28 ADX 0.753247 0.873418
29 A22 0.746988 0.985915
30 50T 0.74359 0.958333
31 KG4 0.74359 0.945205
32 PRX 0.734177 0.893333
33 APC 0.734177 0.958904
34 ABM 0.733333 0.917808
35 45A 0.733333 0.917808
36 ATF 0.731707 0.958904
37 7D4 0.730769 0.905405
38 ITT 0.730769 0.943662
39 AMP MG 0.72973 0.929577
40 ADQ 0.729412 0.945205
41 A3R 0.729412 0.907895
42 AP2 0.714286 0.958904
43 A12 0.714286 0.958904
44 A1R 0.709302 0.907895
45 SRA 0.706667 0.918919
46 JNT 0.701149 0.945205
47 5AL 0.698795 0.931507
48 8LE 0.698795 0.894737
49 ADP MG 0.696203 0.943662
50 ADP BEF 0.696203 0.943662
51 JSQ 0.695122 0.945946
52 HFD 0.695122 0.945946
53 9X8 0.693182 0.92
54 OAD 0.693182 0.945205
55 AU1 0.6875 0.972222
56 APC MG 0.682927 0.917808
57 8LH 0.682353 0.906667
58 SRP 0.682353 0.906667
59 G5P 0.680851 0.921053
60 25A 0.678161 0.971831
61 OZV 0.678161 0.971831
62 3OD 0.677778 0.945205
63 4AD 0.670455 0.92
64 G3A 0.670213 0.921053
65 8LQ 0.666667 0.906667
66 QA7 0.666667 0.894737
67 00A 0.662921 0.883117
68 ADP PO3 0.662651 0.943662
69 RBY 0.662651 0.932432
70 ADV 0.662651 0.932432
71 ATP MG 0.662651 0.943662
72 BIS 0.659341 0.933333
73 5SV 0.659091 0.848101
74 OOB 0.659091 0.931507
75 8QN 0.659091 0.931507
76 GTA 0.65625 0.886076
77 KMQ 0.655914 0.932432
78 BEF ADP 0.654762 0.917808
79 UP5 0.653061 0.92
80 AMO 0.651685 0.932432
81 PAJ 0.651685 0.884615
82 VO4 ADP 0.651163 0.945205
83 2A5 0.650602 0.918919
84 MAP 0.647727 0.945946
85 3AT 0.647059 0.971831
86 AHX 0.644444 0.896104
87 DLL 0.644444 0.931507
88 ATR 0.642857 0.971429
89 PAP 0.642857 0.985714
90 PTJ 0.641304 0.896104
91 V2G 0.639535 0.896104
92 7D3 0.6375 0.905405
93 3UK 0.637363 0.918919
94 SON 0.634146 0.932432
95 A4P 0.633663 0.843373
96 ANP MG 0.632184 0.931507
97 ALF ADP 0.632184 0.87013
98 LAD 0.630435 0.860759
99 PR8 0.630435 0.85
100 B5V 0.630435 0.906667
101 WAQ 0.630435 0.883117
102 AFH 0.628866 0.884615
103 LMS 0.628205 0.82716
104 DTP 0.627907 0.905405
105 GAP 0.627907 0.893333
106 TXA 0.623656 0.932432
107 ME8 0.623656 0.839506
108 NB8 0.623656 0.896104
109 1ZZ 0.623656 0.839506
110 FYA 0.623656 0.905405
111 DQV 0.622449 0.958333
112 T5A 0.621359 0.841463
113 XYA 0.619718 0.84507
114 RAB 0.619718 0.84507
115 ADN 0.619718 0.84507
116 DAL AMP 0.611111 0.905405
117 9SN 0.610526 0.871795
118 48N 0.61 0.896104
119 AP0 0.607843 0.896104
120 9ZD 0.604396 0.907895
121 9ZA 0.604396 0.907895
122 B5M 0.604167 0.894737
123 B5Y 0.604167 0.894737
124 FA5 0.604167 0.906667
125 NAX 0.60396 0.873418
126 DND 0.60396 0.932432
127 NAI 0.60396 0.907895
128 6V0 0.60396 0.896104
129 TXD 0.60396 0.907895
130 ADP BMA 0.602151 0.918919
131 A2R 0.6 0.985915
132 OMR 0.598039 0.851852
133 TXE 0.598039 0.907895
134 XAH 0.597938 0.839506
135 7DT 0.593023 0.985714
136 AOC 0.592593 0.821918
137 L3W 0.592233 0.932432
138 4UV 0.591837 0.894737
139 DDS 0.590909 0.878378
140 139 0.590476 0.873418
141 CNA 0.584906 0.932432
142 6AD 0.58427 0.909091
143 5AS 0.583333 0.77907
144 5N5 0.581081 0.819444
145 GA7 0.58 0.906667
146 4UU 0.58 0.894737
147 4TC 0.576923 0.896104
148 ADJ 0.575472 0.851852
149 5CD 0.573333 0.805556
150 A4D 0.573333 0.819444
151 RGT 0.571429 0.958904
152 A3P 0.571429 0.971429
153 7D5 0.56962 0.878378
154 LAQ 0.568627 0.839506
155 NO7 0.565217 0.932432
156 F2R 0.564815 0.864198
157 80F 0.563636 0.841463
158 CUU 0.563218 0.971831
159 YLP 0.563107 0.819277
160 UPA 0.561905 0.907895
161 AV2 0.56044 0.917808
162 COD 0.559633 0.811765
163 4UW 0.557692 0.860759
164 JB6 0.556701 0.883117
165 3AM 0.555556 0.929577
166 ATP A 0.555556 0.930556
167 ATP A A A 0.555556 0.930556
168 A2P 0.552941 0.957143
169 TYM 0.552381 0.906667
170 NA7 0.552083 0.958904
171 EP4 0.551282 0.753247
172 MYR AMP 0.55102 0.817073
173 PPS 0.549451 0.873418
174 YLB 0.54717 0.819277
175 YLC 0.54717 0.839506
176 DAT 0.545455 0.905405
177 NAD 0.545455 0.931507
178 H1Q 0.545455 0.90411
179 G5A 0.544444 0.77907
180 DTA 0.544304 0.786667
181 M2T 0.544304 0.734177
182 3DH 0.54321 0.773333
183 128 0.542857 0.776471
184 AHZ 0.538462 0.817073
185 SSA 0.537634 0.8
186 GTP 0.537634 0.92
187 MTA 0.5375 0.773333
188 IOT 0.537037 0.831325
189 A3D 0.535714 0.918919
190 AR6 AR6 0.533981 0.917808
191 ARG AMP 0.533981 0.829268
192 7MD 0.533981 0.8625
193 YLA 0.53211 0.819277
194 IMO 0.529412 0.929577
195 AMP DBH 0.529412 0.893333
196 TAD 0.528846 0.884615
197 AYB 0.527273 0.809524
198 HDV 0.526882 0.893333
199 A5A 0.526882 0.807229
200 TSB 0.526316 0.819277
201 EAD 0.525424 0.873418
202 2AM 0.52439 0.943662
203 6RE 0.52381 0.759494
204 6MZ 0.523256 0.930556
205 7DD 0.522727 0.985714
206 CZF 0.521739 0.931507
207 V3L 0.521739 0.971831
208 AVV 0.520833 0.896104
209 BTX 0.517857 0.841463
210 NAE 0.517241 0.894737
211 QBQ 0.516129 0.906667
212 52H 0.515789 0.77907
213 VMS 0.515789 0.788235
214 54H 0.515789 0.788235
215 NSS 0.515464 0.8
216 BT5 0.513274 0.831325
217 NAQ 0.512821 0.871795
218 ZAS 0.511905 0.766234
219 A3N 0.511628 0.786667
220 J7C 0.511628 0.769231
221 5X8 0.511111 0.763158
222 5CA 0.510417 0.8
223 53H 0.510417 0.77907
224 8X1 0.510417 0.752809
225 NVA LMS 0.510204 0.752809
226 ARU 0.510204 0.860759
227 ALF ADP 3PG 0.509259 0.8375
228 AF3 ADP 3PG 0.509259 0.8375
229 38V 0.508475 0.886076
230 ZID 0.508475 0.918919
231 P1H 0.508197 0.851852
232 OVE 0.505882 0.905405
233 S4M 0.505747 0.666667
234 LEU LMS 0.50505 0.730337
235 LPA AMP 0.504673 0.817073
236 NAD TDB 0.504587 0.917808
237 7MC 0.504587 0.841463
238 NAD IBO 0.504587 0.917808
239 D4F 0.504274 0.839506
240 P5A 0.5 0.744444
241 DZD 0.5 0.884615
242 DSZ 0.5 0.8
243 MAO 0.5 0.759036
244 DSH 0.5 0.725
245 LSS 0.5 0.761364
246 FB0 0.5 0.804598
247 NDE 0.495935 0.932432
248 N0B 0.495798 0.819277
249 M24 0.495726 0.85
250 YLY 0.495726 0.809524
251 NJP 0.495575 0.945946
252 9K8 0.49505 0.714286
253 MGP 0.494737 0.884615
254 6C6 0.494624 0.881579
255 O02 0.494624 0.921053
256 NWW 0.493671 0.760563
257 NAJ PZO 0.491379 0.848101
258 0WD 0.491228 0.921053
259 6G0 0.489583 0.884615
260 GJV 0.488636 0.75
261 6FA 0.488189 0.841463
262 5AD 0.486842 0.746479
263 KAA 0.485149 0.752809
264 GSU 0.485149 0.77907
265 71V 0.483146 0.907895
266 NEC 0.482759 0.746667
267 A3G 0.482759 0.8
268 ODP 0.482456 0.909091
269 K3K 0.480769 0.802632
270 FAS 0.48062 0.851852
271 FAD 0.48062 0.851852
272 7D7 0.480519 0.743243
273 FDA 0.480315 0.833333
274 N6P 0.48 0.915493
275 2SA 0.479167 0.932432
276 GP3 0.478723 0.921053
277 AMP NAD 0.478261 0.905405
278 SFG 0.478261 0.75
279 4TA 0.478261 0.807229
280 NDP 0.477876 0.921053
281 NPW 0.477876 0.886076
282 LQJ 0.47619 0.917808
283 NDC 0.47619 0.871795
284 YSA 0.47619 0.77907
285 NAJ PYZ 0.475 0.807229
286 MGO 0.474227 0.860759
287 NZQ 0.473684 0.909091
288 TXP 0.473684 0.921053
289 6IA 0.473684 0.8375
290 GDP 0.473684 0.92
291 A7D 0.472527 0.776316
292 J4G 0.470588 0.92
293 SFD 0.469231 0.734043
294 SA8 0.468085 0.707317
295 A5D 0.468085 0.786667
296 ZDA 0.468085 0.864865
297 12D 0.46789 0.785714
298 PGS 0.467391 0.883117
299 MHZ 0.467391 0.697674
300 8PZ 0.466667 0.8
301 62F 0.466165 0.8625
302 D5M 0.465909 0.878378
303 DA 0.465909 0.878378
304 GGZ 0.464646 0.825
305 SAH 0.463158 0.74359
306 SAI 0.463158 0.734177
307 FAY 0.462687 0.8625
308 Y3J 0.4625 0.726027
309 B1U 0.462264 0.736264
310 PO4 PO4 A A A A PO4 0.460784 0.902778
311 AAM 0.460674 0.971429
312 RFL 0.459259 0.821429
313 SMM 0.459184 0.686047
314 HF7 0.459184 0.893333
315 C2R 0.458824 0.90411
316 AMZ 0.458824 0.916667
317 SAM 0.458333 0.690476
318 K3E 0.457944 0.792208
319 A3S 0.456522 0.810811
320 FNK 0.455224 0.804598
321 7C5 0.453704 0.818182
322 AAT 0.453608 0.707317
323 EEM 0.453608 0.690476
324 NWQ 0.453488 0.739726
325 XNP 0.452991 0.873418
326 PRT 0.45283 0.931507
327 K2R 0.451923 0.88
328 AIR 0.451219 0.901408
329 62X 0.45098 0.666667
330 KOY 0.45045 0.802632
331 GSP 0.45 0.873418
332 ETB 0.45 0.833333
333 DCA 0.45 0.823529
334 N5O 0.449438 0.763158
335 NIA 0.448276 0.822785
336 A3T 0.446809 0.821918
337 K15 0.446602 0.682353
338 PUA 0.446281 0.884615
339 QXP 0.445545 0.785714
340 6K6 0.445545 0.930556
341 GEK 0.445545 0.7375
342 4YB 0.445455 0.761364
343 V47 0.444444 0.783784
344 S7M 0.444444 0.690476
345 DG1 0.443548 0.921053
346 1DG 0.443548 0.921053
347 Z5A 0.443548 0.77907
348 COA 0.442623 0.823529
349 0T1 0.442623 0.823529
350 WSA 0.442478 0.788235
351 8BR 0.43956 0.906667
352 N5A 0.43956 0.736842
353 DZ4 0.438776 0.881579
354 8Q2 0.438596 0.772727
355 101 0.438202 0.878378
356 IDP 0.4375 0.918919
357 NVA 2AD 0.4375 0.759494
358 9JJ 0.435714 0.8625
359 KY2 0.435644 0.731707
360 NAP 0.435484 0.945205
361 K2W 0.435185 0.740741
362 APU 0.434783 0.894737
363 7RP 0.433333 0.928571
364 QXG 0.432692 0.776471
365 A6D 0.432692 0.722892
366 TAP 0.432 0.907895
367 AMX 0.432 0.833333
368 COS 0.432 0.804598
369 CAO 0.432 0.795455
370 J7V 0.432 0.833333
371 30N 0.432 0.752688
372 V1N 0.431193 0.917808
373 KL2 0.430233 0.837838
374 K38 0.429907 0.779221
375 649 0.429825 0.744444
376 P5F 0.429577 0.823529
377 NA0 0.428571 0.932432
378 7RA 0.428571 0.957747
379 SCO 0.428571 0.823529
380 R2V 0.428571 0.785714
381 CMX 0.428571 0.823529
382 0UM 0.427184 0.698795
383 KYB 0.427184 0.731707
384 GAV 0.427184 0.884615
385 1RB 0.426966 0.885714
386 QQY 0.426966 0.815789
387 ACK 0.426966 0.861111
388 GCP 0.425743 0.896104
389 G1R 0.425743 0.907895
390 ACO 0.425197 0.795455
391 FCX 0.425197 0.795455
392 FAM 0.425197 0.804598
393 OZP 0.424779 0.728395
394 O05 0.424528 0.843373
395 GNH 0.424242 0.907895
396 F2N 0.423611 0.813953
397 K2H 0.423077 0.75641
398 GKE 0.422018 0.884615
399 GDC 0.422018 0.884615
400 K3H 0.422018 0.75
401 GDD 0.422018 0.884615
402 KYE 0.422018 0.714286
403 HAX 0.421875 0.804598
404 3AD 0.421687 0.805556
405 9GM 0.421569 0.896104
406 GNP 0.421569 0.896104
407 FA9 0.42069 0.864198
408 TM1 0.420561 0.77381
409 KY5 0.420561 0.725
410 KB1 0.420561 0.698795
411 9BG 0.420168 0.896104
412 H6Y 0.42 0.945205
413 2MC 0.419847 0.769231
414 KXW 0.419643 0.707317
415 FYN 0.418605 0.823529
416 3KK 0.418605 0.804598
417 S8M 0.417476 0.759494
418 7L1 0.417323 0.795455
419 26A 0.416667 0.763158
420 2VA 0.416667 0.8
421 NHD 0.416667 0.905405
422 HZ2 0.415929 0.731707
423 QQX 0.41573 0.805195
424 CA6 0.415385 0.729167
425 OXK 0.415385 0.804598
426 MCD 0.415385 0.804598
427 SOP 0.415385 0.804598
428 COK 0.415385 0.804598
429 YZS 0.415385 0.729167
430 KGP 0.415385 0.729167
431 KY8 0.415094 0.728395
432 K2K 0.415094 0.7375
433 FAJ 0.414966 0.831325
434 NX8 0.414141 0.716049
435 Q34 0.413793 0.674419
436 YE1 0.413534 0.813953
437 RMB 0.413043 0.873239
438 FAI 0.413043 0.916667
439 AS 0.413043 0.833333
440 CO6 0.412214 0.804598
441 1VU 0.412214 0.795455
442 NMX 0.412214 0.76087
443 CMC 0.412214 0.804598
444 SXZ 0.411215 0.710843
445 ANZ 0.410714 0.8
446 SCA 0.410448 0.804598
447 SCD 0.409091 0.823529
448 CAJ 0.409091 0.804598
449 NAD BBN 0.408759 0.841463
450 HY8 0.408696 0.731707
451 EO7 0.408602 0.788235
452 D3Y 0.407767 0.789474
453 CC5 0.407407 0.816901
454 KGA 0.407407 0.744681
455 KH3 0.40708 0.674419
456 PLP AAD 0.406504 0.733333
457 SLU 0.406504 0.770115
458 G 0.40625 0.906667
459 5GP 0.40625 0.906667
460 MLC 0.406015 0.804598
461 KGJ 0.406015 0.752688
462 1HE 0.406015 0.786517
463 3HC 0.406015 0.813953
464 A1S 0.406015 0.804598
465 IVC 0.406015 0.813953
466 BCO 0.406015 0.804598
467 GTG 0.405405 0.886076
468 NMN AMP PO4 0.404959 0.87013
469 Q2P 0.404959 0.674419
470 3D1 0.404762 0.773333
471 3L1 0.404762 0.773333
472 2BA 0.404255 0.915493
473 CMP 0.404255 0.901408
474 VRT 0.40404 0.769231
475 SO8 0.40404 0.789474
476 MCA 0.402985 0.795455
477 COO 0.402985 0.804598
478 CAA 0.402985 0.813953
479 SO5 0.402985 0.721649
480 LCV 0.402985 0.721649
481 NAD CJ3 0.402878 0.811765
482 3NZ 0.401869 0.782051
483 G2R 0.401869 0.884615
484 YXS 0.4 0.729167
485 2CP 0.4 0.795455
486 2FA 0.4 0.813333
487 YXR 0.4 0.729167
488 ZZB 0.4 0.77381
489 MC4 0.4 0.76087
Ligand no: 2; Ligand: DND; Similar ligands found: 299
No: Ligand ECFP6 Tc MDL keys Tc
1 DND 1 1
2 NAD 0.765766 0.972603
3 A3D 0.752212 0.959459
4 NAD TDB 0.727273 0.958904
5 NAD IBO 0.727273 0.958904
6 AMP NAD 0.689655 0.972603
7 A2D 0.659574 0.958904
8 CNA 0.644068 0.972973
9 BA3 0.628866 0.958904
10 AP5 0.622449 0.958904
11 B4P 0.622449 0.958904
12 NHD 0.619835 0.945946
13 ZID 0.619048 0.959459
14 NAP 0.619048 0.959459
15 AR6 0.613861 0.958904
16 APR 0.613861 0.958904
17 NAQ 0.611111 0.910256
18 NA0 0.609375 0.946667
19 ADP 0.606061 0.932432
20 ATP 0.60396 0.932432
21 KG4 0.60396 0.959459
22 HEJ 0.60396 0.932432
23 NAE 0.603175 0.934211
24 TAP 0.601562 0.897436
25 AT4 0.6 0.896104
26 AN2 0.6 0.92
27 AQP 0.598039 0.932432
28 5FA 0.598039 0.932432
29 NFD 0.596774 0.922078
30 8ID 0.596639 0.923077
31 M33 0.594059 0.92
32 CA0 0.594059 0.959459
33 OOB 0.592593 0.972603
34 AGS 0.592233 0.884615
35 AD9 0.592233 0.907895
36 N01 0.592 0.945946
37 OAD 0.590909 0.959459
38 ACP 0.588235 0.907895
39 A1R 0.587156 0.873418
40 DQV 0.581197 0.972603
41 3OD 0.580357 0.959459
42 NDE 0.578947 0.946667
43 HQG 0.574074 0.945946
44 A3R 0.572727 0.873418
45 WAQ 0.571429 0.897436
46 NDC 0.57037 0.910256
47 A22 0.568807 0.945946
48 8LQ 0.568807 0.921053
49 00A 0.567568 0.922078
50 DLL 0.567568 0.972603
51 JNT 0.567568 0.907895
52 ANP 0.566038 0.907895
53 ACQ 0.566038 0.907895
54 ADX 0.563107 0.841463
55 9X8 0.5625 0.909091
56 AMP 0.561224 0.905405
57 A 0.561224 0.905405
58 NGD 0.560976 0.923077
59 5AL 0.560748 0.945946
60 8LE 0.560748 0.909091
61 45A 0.56 0.881579
62 ABM 0.56 0.881579
63 NJP 0.56 0.96
64 50T 0.557692 0.894737
65 ATF 0.555556 0.896104
66 QA7 0.554545 0.909091
67 PRX 0.552381 0.858974
68 NAJ 0.552 0.945946
69 6YZ 0.550459 0.907895
70 SRP 0.550459 0.921053
71 8LH 0.550459 0.921053
72 3UK 0.548673 0.959459
73 V2G 0.546296 0.886076
74 AMO 0.544643 0.946667
75 4AD 0.544643 0.96
76 ADQ 0.544643 0.959459
77 B5V 0.54386 0.946667
78 9SN 0.543103 0.910256
79 NAX 0.540984 0.8875
80 AMP MG 0.54 0.917808
81 FYA 0.53913 0.894737
82 1ZZ 0.53913 0.853659
83 B5M 0.538462 0.934211
84 SON 0.538462 0.921053
85 FA5 0.538462 0.946667
86 GAP 0.537037 0.933333
87 TXE 0.536585 0.922078
88 8QN 0.535714 0.945946
89 F2R 0.535433 0.855422
90 A12 0.533981 0.896104
91 AP2 0.533981 0.896104
92 9JJ 0.533784 0.9
93 48N 0.532787 0.910256
94 PAJ 0.530973 0.898734
95 PR8 0.530435 0.864198
96 NCN 0.53 0.808219
97 6V0 0.528455 0.910256
98 NAI 0.528455 0.922078
99 TXD 0.528455 0.922078
100 AHX 0.526316 0.886076
101 TXA 0.525862 0.946667
102 BIS 0.525862 0.873418
103 KMQ 0.525424 0.921053
104 G3A 0.525 0.910256
105 SRA 0.524752 0.858974
106 OMR 0.524194 0.865854
107 ADP BEF 0.52381 0.931507
108 ADP MG 0.52381 0.931507
109 APC 0.523364 0.896104
110 TAT 0.522936 0.896104
111 T99 0.522936 0.896104
112 25L 0.521368 0.945946
113 G5P 0.520661 0.910256
114 L3W 0.52 0.921053
115 AU1 0.518868 0.907895
116 LAD 0.517241 0.875
117 ME8 0.512821 0.853659
118 PTJ 0.512821 0.886076
119 NB8 0.512821 0.910256
120 B5Y 0.512605 0.934211
121 LAQ 0.512195 0.853659
122 80F 0.51145 0.878049
123 9ZA 0.508772 0.897436
124 5SV 0.508772 0.817073
125 9ZD 0.508772 0.897436
126 OZV 0.508772 0.932432
127 25A 0.508772 0.932432
128 139 0.507812 0.8875
129 ATP MG 0.504587 0.931507
130 ADV 0.504587 0.921053
131 APC MG 0.504587 0.906667
132 ADP PO3 0.504587 0.931507
133 RBY 0.504587 0.921053
134 GTA 0.504065 0.9
135 NDO 0.503704 0.933333
136 EAD 0.50365 0.8875
137 TYM 0.5 0.946667
138 BEF ADP 0.5 0.906667
139 IOT 0.5 0.823529
140 DAL AMP 0.5 0.945946
141 ALF ADP 0.5 0.860759
142 VO4 ADP 0.5 0.907895
143 ANP MG 0.5 0.92
144 NAD BBN 0.5 0.878049
145 T5A 0.496124 0.855422
146 AP0 0.496063 0.886076
147 AFH 0.495935 0.898734
148 4UU 0.495935 0.934211
149 XAH 0.495868 0.831325
150 NAD CJ3 0.493243 0.847059
151 A4P 0.492188 0.835294
152 UP5 0.492063 0.934211
153 4UV 0.491803 0.934211
154 MAP 0.486957 0.884615
155 COD 0.484848 0.804598
156 ADJ 0.484615 0.865854
157 GA7 0.483871 0.896104
158 DZD 0.481203 0.898734
159 BT5 0.481203 0.823529
160 4UW 0.480315 0.898734
161 M24 0.477941 0.8875
162 AOC 0.47619 0.789474
163 4TC 0.472868 0.910256
164 YLP 0.472441 0.833333
165 7MD 0.472 0.876543
166 NBP 0.471429 0.898734
167 LMS 0.471154 0.797619
168 MYR AMP 0.471074 0.853659
169 V47 0.469565 0.824324
170 P1H 0.468531 0.865854
171 AMP DBH 0.467742 0.933333
172 ODP 0.466165 0.923077
173 DSZ 0.466102 0.813953
174 A2R 0.465517 0.945946
175 NAD NDT 0.464968 0.739583
176 PAP 0.464286 0.918919
177 ATP A 0.463415 0.945205
178 ATP A A A 0.463415 0.945205
179 NAJ PZO 0.463235 0.886076
180 YLA 0.462121 0.833333
181 YLB 0.461538 0.833333
182 YLC 0.461538 0.853659
183 8X1 0.461538 0.747253
184 NMN 0.461538 0.851351
185 ARG AMP 0.460317 0.843373
186 G5A 0.460177 0.772727
187 5AS 0.458716 0.752809
188 ADP BMA 0.458333 0.959459
189 NA7 0.458333 0.896104
190 AVV 0.457627 0.8625
191 2A5 0.455357 0.858974
192 P5A 0.454545 0.73913
193 VMS 0.452991 0.781609
194 54H 0.452991 0.781609
195 A7R 0.452381 0.858974
196 ATR 0.451327 0.905405
197 7D4 0.45045 0.846154
198 ITT 0.45045 0.88
199 UPA 0.450382 0.922078
200 LPA AMP 0.449612 0.853659
201 TSB 0.449153 0.811765
202 A5A 0.448276 0.8
203 AYB 0.447761 0.823529
204 HFD 0.447368 0.884615
205 JSQ 0.447368 0.884615
206 TAD 0.445312 0.875
207 SSA 0.444444 0.793103
208 6FA 0.442953 0.855422
209 D4F 0.442857 0.876543
210 ALF ADP 3PG 0.442748 0.875
211 GSU 0.442623 0.793103
212 FB0 0.442177 0.777778
213 AHZ 0.44186 0.853659
214 NSS 0.441667 0.813953
215 BTX 0.441176 0.811765
216 0WD 0.441176 0.910256
217 52H 0.440678 0.772727
218 7D3 0.440367 0.846154
219 5CD 0.44 0.773333
220 8PZ 0.44 0.813953
221 6AD 0.439655 0.851852
222 7MC 0.439394 0.855422
223 9K8 0.439024 0.747253
224 JB6 0.439024 0.873418
225 RAB 0.438776 0.810811
226 ADN 0.438776 0.810811
227 XYA 0.438776 0.810811
228 NVA LMS 0.438017 0.766667
229 53H 0.436975 0.772727
230 5CA 0.436975 0.793103
231 N0B 0.43662 0.855422
232 YSA 0.436508 0.793103
233 A3P 0.436364 0.905405
234 FDA 0.436242 0.825581
235 YLY 0.435714 0.823529
236 LEU LMS 0.434426 0.764045
237 4YB 0.434109 0.795455
238 H1Q 0.433628 0.893333
239 AF3 ADP 3PG 0.431818 0.875
240 3AT 0.431034 0.906667
241 5N5 0.43 0.786667
242 LSS 0.429752 0.755556
243 NPW 0.42963 0.876543
244 NAJ PYZ 0.429577 0.843373
245 FAS 0.427632 0.865854
246 SFD 0.427632 0.747368
247 FAD 0.427632 0.865854
248 KOY 0.427481 0.842105
249 PPS 0.42735 0.819277
250 EP4 0.427184 0.725
251 AR6 AR6 0.426357 0.958904
252 FNK 0.425806 0.797753
253 A4D 0.425743 0.786667
254 B1U 0.425197 0.769231
255 DTA 0.423077 0.779221
256 P5F 0.42236 0.858824
257 CUU 0.421053 0.906667
258 649 0.421053 0.758242
259 WSA 0.421053 0.802326
260 5X8 0.421053 0.779221
261 3AM 0.420561 0.866667
262 4TA 0.42029 0.843373
263 J4G 0.419355 0.909091
264 KAA 0.419355 0.747253
265 NDP 0.419118 0.910256
266 MTA 0.419048 0.74359
267 F2N 0.417178 0.806818
268 NO7 0.416667 0.871795
269 TXP 0.416058 0.910256
270 NZQ 0.416058 0.898734
271 7D5 0.415094 0.820513
272 ARU 0.414634 0.807229
273 6RE 0.412844 0.731707
274 AV2 0.411765 0.857143
275 3DH 0.411215 0.74359
276 A2P 0.410714 0.891892
277 QXP 0.409836 0.77907
278 M2T 0.409524 0.728395
279 SFG 0.408696 0.766234
280 R2V 0.408 0.77907
281 62F 0.407643 0.853659
282 8Q2 0.407407 0.786517
283 38V 0.406897 0.876543
284 DTP 0.40678 0.846154
285 FA9 0.406061 0.855422
286 PUA 0.405594 0.875
287 J7C 0.405405 0.719512
288 A3N 0.405405 0.75641
289 FAY 0.405063 0.876543
290 DG1 0.40411 0.910256
291 1DG 0.40411 0.910256
292 ZAS 0.40367 0.759494
293 RFL 0.402516 0.835294
294 A5D 0.401709 0.779221
295 SA8 0.401709 0.722892
296 CMX 0.401361 0.816092
297 SCO 0.401361 0.816092
298 FAJ 0.401198 0.845238
299 XNP 0.4 0.864198
Similar Ligands (3D)
Ligand no: 1; Ligand: ATP; Similar ligands found: 41
No: Ligand Similarity coefficient
1 ADP AF3 0.9964
2 ADP ALF 0.9801
3 ADP VO4 0.9704
4 BEF GDP 0.9696
5 GDP ALF 0.9646
6 GDP AF3 0.9633
7 GDP BEF 0.9621
8 ALF GDP 0.9621
9 DBG 0.9581
10 CTP 0.9340
11 UTP 0.9337
12 GDP MG 0.9246
13 DGT 0.9177
14 DCP 0.9141
15 DCP MG 0.9114
16 8DG 0.9051
17 MGT 0.9049
18 6U4 0.8990
19 2KH 0.8972
20 MSP 0.8951
21 TTP 0.8917
22 MOD 0.8909
23 8GT 0.8879
24 G2P 0.8852
25 DGI 0.8847
26 2TM 0.8819
27 L3U 0.8814
28 M7G 0.8804
29 GP2 0.8802
30 DUT 0.8788
31 UNP 0.8786
32 Y9Z 0.8773
33 F6G 0.8769
34 DUP 0.8755
35 GH3 0.8730
36 D3T 0.8684
37 0RC 0.8650
38 BUP 0.8621
39 DUT MG 0.8599
40 UDP 0.8570
41 TYR AMP 0.8561
Ligand no: 2; Ligand: DND; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1XNG; Ligand: DND; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 1xng.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 1KQP ADJ 38.806
Pocket No.: 2; Query (leader) PDB : 1XNG; Ligand: ATP; Similar sites found with APoc: 2
This union binding pocket(no: 2) in the query (biounit: 1xng.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 1KQP ADJ 38.806
2 1KQP ADJ 38.806
Pocket No.: 3; Query (leader) PDB : 1XNG; Ligand: DND; Similar sites found with APoc: 2
This union binding pocket(no: 3) in the query (biounit: 1xng.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1KQP ADJ 38.806
2 1KQP ADJ 38.806
Pocket No.: 4; Query (leader) PDB : 1XNG; Ligand: ATP; Similar sites found with APoc: 2
This union binding pocket(no: 4) in the query (biounit: 1xng.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 1KQP ADJ 38.806
2 1KQP ADJ 38.806
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