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Receptor
PDB id Resolution Class Description Source Keywords
1YB5 1.85 Å EC: 1.6.5.5 CRYSTAL STRUCTURE OF HUMAN ZETA-CRYSTALLIN WITH BOUND NADP HOMO SAPIENS MEDIUM-CHAIN DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE QUINONREDUCTION STRUCTURAL GENOMICS STRUCTURAL GENOMICS CONSORT
Ref.: CRYSTAL STRUCTURE OF HUMAN ZETA-CRYSTALLIN AT 1.85A TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:812;
A:813;
B:811;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
59.044 C2 H3 O2 CC(=O...
CL A:816;
A:818;
B:817;
B:819;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
GOL A:814;
A:815;
A:820;
B:821;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
NAP A:801;
B:802;
Valid;
Valid;
none;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YB5 1.85 Å EC: 1.6.5.5 CRYSTAL STRUCTURE OF HUMAN ZETA-CRYSTALLIN WITH BOUND NADP HOMO SAPIENS MEDIUM-CHAIN DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE QUINONREDUCTION STRUCTURAL GENOMICS STRUCTURAL GENOMICS CONSORT
Ref.: CRYSTAL STRUCTURE OF HUMAN ZETA-CRYSTALLIN AT 1.85A TO BE PUBLISHED
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1YB5 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1YB5 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1YB5 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NHD 0.68254 0.958904
10 NJP 0.661417 0.972973
11 NFD 0.658915 0.934211
12 NXX 0.619048 0.959459
13 DND 0.619048 0.959459
14 AMP NAD 0.606061 0.958904
15 ZID 0.605839 0.972603
16 NAQ 0.59854 0.922078
17 ATR 0.59292 0.917808
18 NAE 0.591241 0.946667
19 NDE 0.58042 0.986301
20 A22 0.571429 0.958904
21 NAJ 0.567164 0.986111
22 A2R 0.563025 0.932432
23 NDC 0.561644 0.922078
24 NA7 0.552846 0.907895
25 ODP 0.551471 0.935065
26 A2P 0.539823 0.930556
27 8ID 0.537313 0.910256
28 NPW 0.525547 0.8875
29 NZQ 0.521739 0.910256
30 CNA 0.521739 0.959459
31 NDP 0.514493 0.922078
32 PO4 PO4 A A A A PO4 0.503937 0.930556
33 1DG 0.503401 0.922078
34 DG1 0.503401 0.922078
35 TXP 0.5 0.922078
36 NMN AMP PO4 0.492958 0.921053
37 XNP 0.492958 0.875
38 25L 0.492308 0.958904
39 25A 0.492063 0.972222
40 NMN 0.486726 0.888889
41 NGD 0.485714 0.935065
42 9JJ 0.481707 0.8875
43 2AM 0.477876 0.891892
44 ADP 0.458333 0.945205
45 PAP 0.451613 0.931507
46 A2D 0.445378 0.945205
47 AN2 0.442623 0.932432
48 7L1 0.441558 0.777778
49 ADP PO3 0.44 0.944444
50 SAP 0.44 0.896104
51 AGS 0.44 0.896104
52 M33 0.439024 0.906667
53 AR6 AR6 0.438849 0.945205
54 BA3 0.438017 0.945205
55 OAD 0.43609 0.92
56 ADP BMA 0.43609 0.92
57 DQV 0.435714 0.958904
58 HEJ 0.435484 0.945205
59 ATP 0.435484 0.945205
60 OOB 0.435115 0.958904
61 B4P 0.434426 0.945205
62 AP5 0.434426 0.945205
63 GAP 0.433071 0.92
64 0WD 0.432432 0.922078
65 2A5 0.432 0.87013
66 5FA 0.432 0.945205
67 AQP 0.432 0.945205
68 AT4 0.430894 0.907895
69 00A 0.428571 0.909091
70 DAL AMP 0.427481 0.932432
71 CA0 0.427419 0.92
72 ADP ALF 0.426357 0.871795
73 ALF ADP 0.426357 0.871795
74 9X8 0.425373 0.871795
75 ACP 0.424 0.92
76 NAJ PZO 0.423841 0.897436
77 9SN 0.423358 0.897436
78 ADP VO4 0.423077 0.932432
79 VO4 ADP 0.423077 0.932432
80 WAQ 0.422222 0.884615
81 V3L 0.421875 0.945205
82 ACQ 0.421875 0.92
83 ADQ 0.421053 0.92
84 AR6 0.420635 0.918919
85 APR 0.420635 0.918919
86 ATP A A A 0.42029 0.958333
87 CO7 0.419753 0.786517
88 3OD 0.419118 0.92
89 1ZZ 0.419118 0.841463
90 DLL 0.41791 0.958904
91 AD9 0.417323 0.92
92 NAX 0.416667 0.875
93 OVE 0.416667 0.857143
94 MYR AMP 0.416058 0.841463
95 AV2 0.415385 0.868421
96 A3P 0.414634 0.944444
97 NNR 0.414414 0.72973
98 OMR 0.413793 0.831325
99 6YZ 0.412214 0.92
100 ANP 0.410853 0.92
101 A1R 0.410448 0.860759
102 ABM 0.409836 0.893333
103 A 0.408333 0.944444
104 AMP 0.408333 0.944444
105 SON 0.408 0.933333
106 PPS 0.407692 0.829268
107 5AL 0.407692 0.932432
108 NAI 0.406897 0.909091
109 7D3 0.406504 0.857143
110 ADX 0.404762 0.829268
111 ATF 0.40458 0.907895
112 3UK 0.404412 0.945946
113 TYR AMP 0.404255 0.921053
114 AMP DBH 0.404255 0.894737
115 139 0.402685 0.875
116 50T 0.401575 0.906667
117 SRP 0.401515 0.907895
118 A A 0.40146 0.972222
119 B5V 0.40146 0.933333
120 A3R 0.4 0.860759
121 3AM 0.4 0.90411
122 B5M 0.4 0.921053
123 FA5 0.4 0.933333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: 556
This union binding pocket(no: 1) in the query (biounit: 1yb5.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 6BKK 308 None
2 3IWD M2T None
3 2BOS GLA GAL GLC None
4 1BXK NAD 1.1396
5 3G89 SAM 1.20482
6 4J4V SVR 1.20968
7 1HYE NAP 1.27796
8 5OSW CIT 1.4245
9 5DN9 NAD 1.4245
10 6EL3 NAP 1.4245
11 4U7W NDP 1.4245
12 1AE1 NAP 1.4652
13 1GAD NAD 1.51515
14 2AE2 PTO 1.53846
15 2AE2 NAP 1.53846
16 5DF1 NAP 1.7094
17 5DF1 58X 1.7094
18 2IXB NAD 1.7094
19 3GFS FMN 1.72414
20 3H9E NAD 1.7341
21 1LUA NAP 1.74216
22 2DBZ NAP 1.79641
23 6BII NAP 1.8018
24 1HDG NAD 1.80723
25 1KYQ NAD 1.82482
26 3ABI NAD 1.9943
27 1CER NAD 1.9943
28 1TB4 PEJ 1.9943
29 6H45 QEI 1.9943
30 1LJ8 NAD 1.9943
31 1M2W NAD 1.9943
32 3CB2 GDP 1.9943
33 1GY8 NAD 1.9943
34 3MCT SAH 2.0202
35 4M37 SAH 2.04082
36 4M38 SAH 2.04082
37 2BD0 NAP 2.04918
38 5OCM NAP 2.06186
39 4E5N NAD 2.12121
40 5BSH PRO 2.16606
41 4O0L NDP 2.18182
42 4JZ8 CIT 2.2082
43 1NYT NAP 2.21402
44 1EQ2 NAP 2.25806
45 5M67 NAD 2.2792
46 5M67 ADE 2.2792
47 1GQ2 NAP 2.2792
48 5M67 3D1 2.2792
49 3L9W AMP 2.2792
50 1RM0 D6P 2.2792
51 1RM0 NAI 2.2792
52 1GZ4 ATP 2.2792
53 5TOW ADN 2.2792
54 5TOW NAI 2.2792
55 2V6G NAP 2.2792
56 4PIV NDP 2.2792
57 1ZGS XMM 2.2792
58 5Z20 NAI 2.31884
59 5OJL TXP 2.34899
60 4MP8 MLI 2.35988
61 4MP8 NAD 2.35988
62 2C29 NAP 2.37389
63 4BVA NDP 2.38806
64 4BVA T3 2.38806
65 3BAZ NAP 2.4024
66 9LDT NAD 2.40964
67 9LDB NAD 2.40964
68 3B1F NAD 2.41379
69 1LDM NAD 2.43161
70 1SOW NAD 2.43902
71 2HJR APR 2.43902
72 2CVQ NDP 2.44648
73 4FBL SPD 2.4911
74 1LDN NAD 2.53165
75 5CAE COA 2.55591
76 1SAY PYR 2.5641
77 4XQC 13D 2.5641
78 4XQC NAD 2.5641
79 1PJS NAD 2.5641
80 4YRI 4JH 2.5641
81 2VWT PYR 2.5641
82 5ZI2 NAD 2.6087
83 5ZI2 ADP 2.6087
84 3RFV 15L 2.62172
85 3RFV NAI 2.62172
86 5A1T NAI 2.6393
87 5A1T OXM 2.6393
88 1I36 NAP 2.65152
89 1RM4 NDP 2.67062
90 3CMC NAD 2.69461
91 2VYN NAD 2.69461
92 1Q0H NDP 2.70936
93 1Q0H FOM 2.70936
94 5U5G NAP 2.71186
95 4YCA NDP 2.72109
96 3CQO FUC 2.73038
97 2CVZ NDP 2.76817
98 4RDH AMP 2.77778
99 4RDI ATP 2.77778
100 2VT3 ATP 2.7907
101 5K4W THR 2.80374
102 5K4W NAI 2.80374
103 3OA2 NAD 2.83019
104 3KIF GDL 2.83019
105 3A06 NDP 2.849
106 4OOE NDP 2.849
107 4OOE FOM 2.849
108 2I3G NAP 2.849
109 4FMS BDP 2.849
110 6C4N NAP 2.849
111 4HXY NDP 2.849
112 3OND NAD 2.849
113 3OND ADN 2.849
114 5Y8L HUI 2.849
115 5Y8L NAD 2.849
116 3A06 FOM 2.849
117 1X87 NAD 2.849
118 1C3V NDP 2.85714
119 2B4R NAD 2.89855
120 2B4R AES 2.89855
121 1GV0 NAD 2.90323
122 1UDB NAD 2.95858
123 1UDB UFG 2.95858
124 3V1Y NAD 2.96736
125 4B4U NAP 2.9703
126 1YXM ADE 2.9703
127 5JE8 NAD 2.98013
128 4XB2 NDP 2.98507
129 4XB2 HSE 2.98507
130 1T5B FMN 2.98507
131 3KB6 NAD 2.99401
132 1DSS NAD 3.003
133 5NUF NAD 3.01205
134 5NUE NAD 3.01205
135 2PV7 NAD 3.02013
136 6GAS FAD 3.02115
137 2GCG NDP 3.0303
138 2AOT SAH 3.08219
139 2A92 NAI 3.11526
140 2ZJ1 ARJ 3.1339
141 2ZJ1 NAD 3.1339
142 1GR0 NAD 3.1339
143 1DLJ NAI 3.1339
144 6AM8 TRP 3.1339
145 4A59 AMP 3.1339
146 1DLJ UGA 3.1339
147 3FGC FMN 3.1339
148 1J5P NAD 3.16206
149 3U4C NDP 3.20285
150 5KKA 6V0 3.20513
151 4PTN GXV 3.207
152 5AYV NAP 3.23625
153 2B4Q NAP 3.26087
154 4Y9D NAI 3.27869
155 3LGS ADE 3.37079
156 1WDK NAD 3.4188
157 1OBB NAD 3.4188
158 1P31 EPU 3.4188
159 1FEC FAD 3.4188
160 4L80 OXL 3.44828
161 3WGT FAD 3.45821
162 3WGT QSC 3.45821
163 1EZ4 NAD 3.45912
164 1SC6 NAD 3.46535
165 2JL1 NAP 3.48432
166 4E13 NAD 3.53357
167 1G0N NDP 3.53357
168 1G0N PHH 3.53357
169 4D3F NAP 3.54839
170 3VPH NAD 3.54839
171 3VPH OXM 3.54839
172 2Q46 NAP 3.55731
173 1DIG NAP 3.59477
174 4QED NAP 3.62903
175 1HKU NAD 3.63128
176 3WMX NAD 3.63128
177 3ICT ADP 3.7037
178 4R5M NAP 3.7037
179 3ICS ADP 3.7037
180 4R5M 4NO 3.7037
181 4L9Z OXL 3.7037
182 2D2I NAP 3.7037
183 2VQD AP2 3.7037
184 1X7D ORN 3.71429
185 1X7D NAD 3.71429
186 1LTH NAD 3.76176
187 5EIN NAP 3.77907
188 2DT5 NAD 3.79147
189 2DC1 NAD 3.81356
190 1UYY BGC BGC 3.81679
191 4I9A NCN 3.81944
192 1GEE NAD 3.83142
193 3B20 NAD 3.83481
194 3B1J NAD 3.83481
195 3O9Z NAD 3.84615
196 3O9Z AKG 3.84615
197 1R6D DAU 3.85757
198 1R6D NAD 3.85757
199 1ZQ9 SAM 3.85965
200 1Z45 NAD 3.86266
201 2FKA BEF 3.87597
202 4Z0H NAD 3.89222
203 2P3V SRT 3.90625
204 5X9D 80F 3.94737
205 1ZK4 NAP 3.98406
206 1ZK4 AC0 3.98406
207 3NGL NAP 3.98551
208 2O4C NAD 3.9886
209 1DJN ADP 3.9886
210 3CIF NAD 3.9886
211 4EMI NAD 3.9886
212 1U1I NAD 3.9886
213 4V15 PLP 3.9886
214 2QRK AMP 3.9886
215 3CIF G3H 3.9886
216 2JK0 ASP 4
217 5LJW ANP 4.03458
218 1O94 ADP 4.0625
219 3AY6 NAI 4.08922
220 5O98 NAP 4.10095
221 3U40 ADN 4.13223
222 1CF2 NAP 4.1543
223 4J7U YTZ 4.16667
224 4J7U NAP 4.16667
225 1PZG A3D 4.22961
226 4XYB NDP 4.2735
227 5LD5 NAD 4.2735
228 3S5W NAP 4.2735
229 1CT9 AMP 4.2735
230 4XFR CIT 4.2735
231 2NSX IFM 4.2735
232 4KBA 1QM 4.2735
233 2AWN ADP 4.2735
234 2GZ3 NAP 4.2735
235 2WET FAD 4.2735
236 3WXB NDP 4.30108
237 1W6U NAP 4.30464
238 1W73 NAP 4.30464
239 1W8D NAP 4.30464
240 3ICC NAP 4.31373
241 3Q3C NAD 4.34783
242 3UW4 MAA CHG PRO 0DQ 4.34783
243 2PK3 A2R 4.36137
244 1GZ6 NAI 4.38871
245 3ITJ CIT 4.43787
246 4PLG NAI 4.49102
247 4PLG OXM 4.49102
248 2NU8 COA 4.51389
249 1GUZ NAD 4.51613
250 5Z2F NAP 4.5283
251 1EBF NAD 4.5584
252 1V59 NAD 4.5584
253 1R6B ADP 4.5584
254 5L53 NAP 4.62963
255 6CI9 NAP 4.6332
256 6ACS CIT 4.65116
257 2F1K NAP 4.6595
258 6F3N ADN 4.66102
259 6F3N NAD 4.66102
260 3RJ5 NAD 4.72441
261 2NXE SAM 4.72441
262 5N2I NAP 4.74138
263 4UP3 NDP 4.77707
264 6F3M NAD 4.78261
265 4IF4 BEF 4.80769
266 2B5W NAP 4.8433
267 1V8B NAD 4.8433
268 2YYY NAP 4.8433
269 2FR1 NDP 4.8433
270 2PZM NAD 4.84848
271 2PZM UDP 4.84848
272 1ORR NAD 4.89914
273 2FJK 13P 4.91803
274 2EV9 NAP 4.94297
275 2EV9 SKM 4.94297
276 3OID NDP 5.03876
277 1OFU GDP 5.04202
278 3WV8 ATP 5.04587
279 4B5W PYR 5.07812
280 4ZVV NAD 5.12048
281 4ZVV GN0 5.12048
282 4ZGS NAD 5.12821
283 1DRV A3D 5.12821
284 1E5Q NDP 5.12821
285 4PLT NAI 5.12821
286 4PLT OXM 5.12821
287 5YU3 NAD 5.23256
288 5YU3 PRO 5.23256
289 1H5Q NAP 5.28302
290 2Q1S NAI 5.30504
291 5YF9 NIO 5.30973
292 1Z6Z NAP 5.31915
293 2AG8 NAP 5.32319
294 5N6C NAD 5.33333
295 1WB4 SXX 5.38721
296 4EI7 GDP 5.39846
297 1YS4 NAP 5.41311
298 2FN1 SAL 5.41311
299 1UXG FUM 5.41311
300 1UXG NAD 5.41311
301 1EK6 UPG 5.45977
302 1EK6 NAI 5.45977
303 5GZ6 NDP 5.52147
304 5GZ6 7C3 5.52147
305 3N9R TD3 5.53746
306 5UAV NDP 5.59006
307 5UAV TFB 5.59006
308 1T26 GBD 5.59006
309 1T26 NAI 5.59006
310 1BXG NAD 5.61798
311 1BW9 NAD 5.61798
312 1C1X NAD 5.6338
313 1C1D PHE 5.6338
314 4DPL NAP 5.69801
315 1MV8 NAD 5.69801
316 1MUU NAD 5.69801
317 2WPF WPF 5.69801
318 2WPF FAD 5.69801
319 4KWI 1TJ 5.70342
320 4KWI NAP 5.70342
321 1ZEM NAD 5.72519
322 1LOJ U 5.74713
323 1LOJ URI 5.74713
324 1DCP HBI 5.76923
325 2Q0L NAP 5.78778
326 4J4H NAI 5.79151
327 4J4H 1J1 5.79151
328 4OM8 NAD 5.82524
329 4ZA2 NAD 5.92885
330 1O6Z NAD 5.94059
331 1VKO NAD 5.98291
332 1UP7 NAD 5.98291
333 5UR0 NAD 5.98291
334 5MSO NAP 5.98291
335 3K5I AIR 5.98291
336 2JAP NDP 6.07287
337 5X20 NAD 6.08974
338 3H8V ATP 6.16438
339 4JK3 NAD 6.17761
340 1NVM NAD 6.26781
341 5OVL NAP 6.26781
342 1RKX NAD 6.26781
343 5OOH NAP 6.31068
344 5OOH 9ZZ 6.31068
345 1J0X NAD 6.3253
346 2GN4 NDP 6.39535
347 1O5I NAD 6.4257
348 5ZEC NAP 6.43275
349 1L5Y BEF 6.45161
350 1UZN NAP 6.47773
351 5OJI ISN 6.53846
352 5OJI NAP 6.53846
353 5MLR NAP 6.55271
354 5MLR GRQ 6.55271
355 1RYI FAD 6.55271
356 5U97 PIT 6.55271
357 1RYI GOA 6.55271
358 1FK8 NAD 6.61479
359 1GEG NAD 6.64062
360 5ZZ6 ADP 6.73077
361 5ZZ6 NAD 6.73077
362 3BPX SAL 6.75676
363 3ORF NAD 6.77291
364 1XG5 NAP 6.81004
365 5L95 AMP 6.81004
366 3CV2 OXL 6.83761
367 1O0S NAI 6.83761
368 5MQ6 NDP 6.83761
369 4OSP NAP 6.84411
370 1A5Z NAD 6.89655
371 5TC4 NAD 6.96203
372 2Q4G CIT 6.97674
373 3AFN NAP 6.97674
374 5AOA PPI 6.99301
375 1GVF PGH 6.99301
376 5Z75 NAD 7.03364
377 1JAY NAP 7.07547
378 4MDH NAD 7.18563
379 3CF6 SP1 7.18563
380 2DTX BMA 7.19697
381 5MDH NAD 7.20721
382 3LZW FAD 7.22892
383 3LZW NAP 7.22892
384 5Z21 NAI 7.26257
385 1OAA OAA 7.33591
386 1EDO NAP 7.37705
387 2VHW NAI 7.40741
388 3QWI NAP 7.40741
389 2GK6 ADP 7.40741
390 3QWI CUE 7.40741
391 2RBK VN4 7.66284
392 3MBC NAP 7.69231
393 3LU1 NAD 7.69231
394 4TQG NDP 7.73994
395 1J2Z SOG 7.77778
396 1XSE NDP 7.79661
397 5LXB 7A9 7.85124
398 2RH4 EMO 7.94224
399 2CDU ADP 7.97721
400 1KEW NAD 7.97721
401 2VPY PCI 7.97721
402 1K3T BRZ 7.97721
403 5GT9 NAP 7.98479
404 3CH6 NAP 8.04196
405 3CH6 311 8.04196
406 2NAD NAD 8.26211
407 5TCI MLI 8.26211
408 2ZAT NAP 8.26211
409 3PA8 621 8.66142
410 4XZ3 COA 8.69565
411 1JA9 NDP 8.75912
412 3RKR NAP 8.77863
413 2GSD NAD 9.11681
414 1LSH PLD 9.11681
415 3KDM TES 9.33333
416 1WP4 NDP 9.34256
417 3M89 GSP 9.68661
418 1B8U NAD 9.72644
419 1B8U OAA 9.72644
420 3HAD NAD 9.74026
421 1P77 ATR 9.92647
422 1HYH NAD 10.0324
423 1KOL NAD 10.0503
424 5HV7 RBL 10.2564
425 4NBT NAD 10.4167
426 1NW4 IMH 10.5072
427 5L4L NAP 10.5263
428 1OC2 NAD 10.6322
429 1OC2 TDX 10.6322
430 1LSS NAD 10.7143
431 3SJ7 NDP 10.7143
432 3A4V NAD 10.7256
433 3A4V PYR 10.7256
434 6CEP NAD 10.7784
435 6CEP OXM 10.7784
436 3WBF NAP 10.8197
437 3WBF API 10.8197
438 1OMO NAD 10.8696
439 3HB5 NAP 11.1111
440 1UWK NAD 11.1111
441 1UWK URO 11.1111
442 5U8U FAD 11.1111
443 6FLZ MMA 11.1111
444 1WVG APR 11.1421
445 1VL8 NAP 11.6105
446 1SQL GUN 11.6438
447 5O9F 9ON 11.6809
448 5O9F NAD 11.6809
449 4RF2 NAP 11.7647
450 5EES NAP 12.1457
451 4MTI 2DX 12.1739
452 3QV1 NAD 12.1951
453 4EDF UPG 12.2507
454 1NVT NAP 12.5436
455 1VBO MAN MAN MAN 12.7517
456 1VBO MAN 12.7517
457 2YX1 SFG 12.8205
458 3O26 NDP 13.1833
459 1J49 NAD 13.2132
460 3NJ4 NAD 13.6752
461 3NJ4 AFX 13.6752
462 1RVX SIA GAL NAG 13.75
463 4RQU NAD 13.9601
464 1VI2 NAD 14
465 3NRZ MTE 14.0984
466 6A0S NDP 14.1566
467 6A0S HSE 14.1566
468 5AOV NAP 14.2857
469 1JPA ANP 14.4231
470 2HK9 ATR 14.5455
471 2HK9 NAP 14.5455
472 6AA8 NAD 14.5695
473 1NPD NAD 14.5833
474 6C4T NA7 14.8148
475 1LVL NAD 14.8148
476 5FEU NAP 15.1203
477 5WQP NAP 15.3846
478 2BGM NAJ 15.8273
479 3VZS NAP 15.9533
480 3VZS CAA 15.9533
481 3OJO NAD 16.2393
482 5OVK NDP 16.4062
483 2ZB3 NDP 16.8091
484 5FFF NAP 17.1206
485 5FFF 5XC 17.1206
486 3TN7 NJP 17.1206
487 1FDJ 13P 17.3789
488 5EPO NAP 17.5573
489 4WAS NAP 17.9487
490 4WAS COO 17.9487
491 6F4W FMC 18.0258
492 4NBU NAI 18.4
493 2YVJ NAI 18.5185
494 5THQ NDP 18.75
495 5B4T NAD 18.8034
496 5B4T 3HR 18.8034
497 1EJ0 SAM 19.4444
498 5WUW NAP 19.5122
499 5VKT NAP 19.6581
500 4CQM NAP 19.6721
501 1Q7B NAP 20.4918
502 4KP7 NAP 20.7977
503 4KP7 1UQ 20.7977
504 3WQQ NDP 21.6524
505 3WQQ IB3 21.6524
506 5YSS NAD 21.875
507 2CDC XYS 22.5071
508 2CDC XYP 22.5071
509 2CDC NAP 22.5071
510 1VKF CIT 22.8723
511 1N9G NAP 23.3618
512 2Q2V NAD 23.9216
513 3VPB GLU 25
514 5H81 NAP 25.4499
515 1D1T NAD 25.641
516 2ZB4 NAP 25.641
517 2ZB4 5OP 25.641
518 4W6Z 8ID 25.6484
519 1KEV NDP 25.9259
520 1YKF NAP 26.2108
521 1HDR NAD 27.0492
522 3B6Z CO7 27.0655
523 1VM6 NAD 27.193
524 5U5N NAD 27.5986
525 3TWO NDP 27.8736
526 1YQD NAP 27.9202
527 5Z2L NDP 28.1633
528 1UO4 PIH 29.4118
529 4B7X NAP 30.6548
530 2DM6 NAP 31.2312
531 2DM6 IMN 31.2312
532 4GKV NAD 31.25
533 5FI3 NAP 31.3725
534 3WLE NAD 31.6239
535 2FZW NAD 32.4786
536 1E3I CXF 33.9031
537 1F8F NAD 35.8974
538 5DOZ NDP 36.0947
539 1P0F NAP 36.7292
540 1CDO NAD 37.1658
541 1LLU NAD 37.4269
542 1U3U NAD 37.9679
543 1U3U BNF 37.9679
544 2JHF NAD 38.4615
545 1PL6 NAD 38.7464
546 1PL6 572 38.7464
547 4A0S NAP 39.6011
548 1H2B NAJ 40.4558
549 3GFB NAD 40.8571
550 2DFV NAD 42.6513
551 4JBI NDP 42.735
552 5DP2 NAP 43.8596
553 4Y1B NAP 45.8689
554 1R37 NAD 47.5504
555 4IDC NDP 48.494
556 4IDC 1XX 48.494
557 4RVU NDP 50
Pocket No.: 2; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1yb5.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: 56
This union binding pocket(no: 3) in the query (biounit: 1yb5.bio2) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC NBU None
2 1VRP IOM 1.1396
3 5HTX ADP 1.4245
4 1P7T PYR 2.2792
5 2PUL ACP 2.2792
6 3I9U DTU 2.28137
7 5ZI9 FLC 2.30769
8 6GG9 FMN 2.46914
9 4TVD BGC 2.5641
10 1Z6K OAA 2.73038
11 4TTQ ATP 2.7907
12 3SJU NDP 2.86738
13 6BSW UDP 3.25444
14 1QMG APX 3.4188
15 4F9C 0SX 3.7037
16 5NXX 3Q7 3.73134
17 4DOO DAO 3.90244
18 2JGV ADP 3.93939
19 5AHW CMP 4.08163
20 4JCA CIT 4.19162
21 1U8X NAD 4.2735
22 2CE7 ADP 4.2735
23 2GDZ NAD 4.2735
24 2JKG PRO PRO PRO PRO PRO PRO PRO PRO 4.46927
25 2W5P CL8 4.69799
26 4OKD GLC GLC GLC 4.8433
27 5F5N NAD 4.84429
28 3JQM GTP 5.09554
29 1ODJ GMP 5.10638
30 4CJX NAP 5.12821
31 3O03 NAP 5.15464
32 2DKN NAI 5.4902
33 2CFC NAD 5.6
34 5C9P FUC 5.69801
35 6APL C5P 5.69801
36 3SQG COM 5.69801
37 5EDE 5M6 5.71429
38 2BVE PH5 5.88235
39 1ZH8 NAP 6.47059
40 5ZDK ATP 7.40741
41 3D3W NAP 7.78689
42 1PR9 NAP 7.78689
43 1VHW ADN 7.90514
44 2D09 FLV 7.97721
45 3HNB 768 8.1761
46 1FWV SGA MAG FUC 8.20895
47 5F1V 3VN 8.41751
48 1IGJ DGX 9.58904
49 1W1A NDG 9.72763
50 1U0J ADP 9.73783
51 5N1X 8HH 11.8644
52 4YGM URA 13.3621
53 1LTI GAL 14.5833
54 3ZX4 2M8 14.6718
55 1X1T NAD 15
56 5TDF 7A3 16.8091
Pocket No.: 4; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1yb5.bio2) has 35 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: 1
This union binding pocket(no: 5) in the query (biounit: 1yb5.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 6BXL SAM 2.849
Pocket No.: 6; Query (leader) PDB : 1YB5; Ligand: NAP; Similar sites found with APoc: 3
This union binding pocket(no: 6) in the query (biounit: 1yb5.bio1) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 1SW1 PBE 3.27273
2 3BMN AX3 3.81944
3 3KL3 DHI 3.9886
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