Receptor
PDB id Resolution Class Description Source Keywords
1YNH 1.95 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
K A:2001;
B:2002;
C:2003;
D:2004;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
39.098 K [K+]
SUO A:1001;
B:1002;
C:1003;
D:1004;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
232.234 C9 H16 N2 O5 C(C[C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YNH 1.95 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 218 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 176 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 143 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SUO; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 SUO 1 1
2 NSK 0.804878 0.970588
3 SUG 0.612245 0.825
4 SN0 0.604651 0.777778
5 SMG 0.553191 0.725
6 AOR 0.534884 0.857143
7 16E 0.423077 0.8
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found: 44
This union binding pocket(no: 1) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1J78 OLA 0.02785 0.40515 1.0917
2 2F5X ASP 0.0213 0.41208 1.28205
3 2Z9I GLY ALA THR VAL 0.02296 0.4146 1.85185
4 2CH5 NAG 0.01246 0.4115 2.01729
5 4I9B 1KA 0.02415 0.40298 2.18341
6 4ZW9 BGC 0.006499 0.41362 2.40175
7 4ZW9 GLC 0.006499 0.41362 2.40175
8 3WMX THR 0.01976 0.40448 2.40175
9 4X6K 3XR 0.01387 0.40204 2.40175
10 5AK8 ALA ARG 0.0001558 0.50964 2.73973
11 1DRJ RIP 0.02255 0.41297 2.95203
12 2ZZV LAC 0.03794 0.40217 3.04709
13 3ZOA ACR 0.008536 0.42811 3.05677
14 4RQL SNE 0.01242 0.41982 3.27511
15 5CKS GAL 0.01692 0.41124 3.4188
16 3JDW ORN 0.0002826 0.41558 3.5461
17 3G6M CFF 0.02288 0.40992 3.69458
18 2F67 12B 0.02561 0.41044 3.72671
19 5HWK BEZ 0.02275 0.41122 3.75
20 4ZYB 4SQ 0.03247 0.40243 4.47761
21 5LKC FUC GLA A2G 0.03711 0.40405 4.54545
22 5GVR LMR 0.008605 0.45011 4.70085
23 2OG2 MLI 0.002152 0.48815 4.73538
24 3IHB GLU 0.01099 0.43068 4.82456
25 1H70 CIR 0.00002113 0.43338 5.09804
26 5N53 8NB 0.03418 0.40244 5.12821
27 2CI5 HCS 0.00005263 0.55528 5.28169
28 2JAJ D20 0.00004349 0.5062 5.53633
29 2CFC KPC 0.02552 0.40736 5.6
30 3B9Q MLI 0.006224 0.45737 5.62914
31 1WDA BAG 0.000003798 0.59797 5.67686
32 1BGV GLU 0.03244 0.40341 5.79065
33 4YSX MLI 0.0133 0.42206 7.05128
34 2XI7 XI7 0.02094 0.40409 7.06522
35 2WZF UDP 0.01601 0.40258 7.20524
36 2A9G ARG 0.00000007373 0.49552 8.61244
37 3A8H TAY 0.03617 0.40434 9.43396
38 3HQ9 OXL 0.01231 0.42687 9.85507
39 1GXU 2HP 0.03631 0.41559 9.89011
40 2B4G ORO 0.009744 0.42986 12.3028
41 3DGY 2GP 0.02426 0.41096 16.4948
42 1RGE 2GP 0.02718 0.40822 17.7083
43 2VOH CIT 0.03897 0.41137 23.0769
44 3LQV ADE 0.03854 0.40975 25.641
Pocket No.: 2; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found: 10
This union binding pocket(no: 3) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2NZ5 226 0.02582 0.40963 1.45278
2 2QLU ADE 0.01629 0.4075 1.59236
3 2CH5 NDG 0.008944 0.41849 2.01729
4 2W5T GP9 0.02525 0.40406 3.06604
5 1V1A KDG 0.02165 0.40749 3.23625
6 1EB9 HBA 0.01865 0.403 4.58015
7 3RK1 ATP 0.01725 0.40105 4.64135
8 4AMW 5DI 0.03667 0.40101 5.8952
9 2E4G TRP 0.03593 0.4001 6.11354
10 4GGZ BTN 0.02498 0.40043 15.6522
Pocket No.: 4; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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