Receptor
PDB id Resolution Class Description Source Keywords
1YNH 1.95 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
K A:2001;
B:2002;
C:2003;
D:2004;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
39.098 K [K+]
SUO A:1001;
B:1002;
C:1003;
D:1004;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
232.234 C9 H16 N2 O5 C(C[C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YNH 1.95 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SUO; Similar ligands found: 10
No: Ligand ECFP6 Tc MDL keys Tc
1 SUO 1 1
2 NSK 0.804878 0.970588
3 SUG 0.612245 0.825
4 SN0 0.604651 0.777778
5 SMG 0.553191 0.725
6 AOR 0.534884 0.857143
7 AQK 0.456522 0.857143
8 KSN 0.431373 0.882353
9 16E 0.423077 0.8
10 AQQ 0.416667 0.8
Similar Ligands (3D)
Ligand no: 1; Ligand: SUO; Similar ligands found: 7
No: Ligand Similarity coefficient
1 LEU LYS 0.8864
2 C6L 0.8832
3 PRO LEU 0.8801
4 8DM 0.8734
5 1EC 0.8691
6 720 0.8654
7 ASP GLU 0.8582
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: 1
This union binding pocket(no: 3) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 6JV0 ORN 3.31126
Pocket No.: 4; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: 1
This union binding pocket(no: 4) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 6JV0 ORN 3.31126
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