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Receptor
PDB id Resolution Class Description Source Keywords
1YQD 1.65 Å EC: 1.1.1.195 SINAPYL ALCOHOL DEHYDROGENASE COMPLEXED WITH NADP+ POPULUS TREMULOIDES LIGNIN MONOLIGNOL OXIDOREDUCTASE ZINC-DEPENDENT PLANT DEBIOSYNTHESIS SUBSTRATE INHIBITION MEDIUM-CHAIN DEHYDROGENSE/REDUCTASE
Ref.: STRUCTURAL AND KINETIC BASIS FOR SUBSTRATE SELECTIV POPULUS TREMULOIDES SINAPYL ALCOHOL DEHYDROGENASE. PLANT CELL V. 17 1598 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
DTT A:700;
B:800;
Invalid;
Invalid;
none;
none;
submit data
154.251 C4 H10 O2 S2 C([C@...
GOL B:900;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
NAP A:500;
B:600;
Valid;
Valid;
none;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
ZN A:1000;
A:2000;
B:3000;
B:4000;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YQD 1.65 Å EC: 1.1.1.195 SINAPYL ALCOHOL DEHYDROGENASE COMPLEXED WITH NADP+ POPULUS TREMULOIDES LIGNIN MONOLIGNOL OXIDOREDUCTASE ZINC-DEPENDENT PLANT DEBIOSYNTHESIS SUBSTRATE INHIBITION MEDIUM-CHAIN DEHYDROGENSE/REDUCTASE
Ref.: STRUCTURAL AND KINETIC BASIS FOR SUBSTRATE SELECTIV POPULUS TREMULOIDES SINAPYL ALCOHOL DEHYDROGENASE. PLANT CELL V. 17 1598 2005
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1YQD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 1YQX - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5FI3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 5VKT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 1YQD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 1YQX - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5H81 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 5FI3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5VKT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 1YQD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 1YQX - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 3TWO - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NHD 0.68254 0.958904
10 NJP 0.661417 0.972973
11 NFD 0.658915 0.934211
12 NXX 0.619048 0.959459
13 DND 0.619048 0.959459
14 AMP NAD 0.606061 0.958904
15 ZID 0.605839 0.972603
16 NAQ 0.59854 0.922078
17 ATR 0.59292 0.917808
18 NAE 0.591241 0.946667
19 NDE 0.58042 0.986301
20 A22 0.571429 0.958904
21 NAJ 0.567164 0.986111
22 A2R 0.563025 0.932432
23 NDC 0.561644 0.922078
24 NA7 0.552846 0.907895
25 ODP 0.551471 0.935065
26 A2P 0.539823 0.930556
27 8ID 0.537313 0.910256
28 NPW 0.525547 0.8875
29 NZQ 0.521739 0.910256
30 CNA 0.521739 0.959459
31 NDP 0.514493 0.922078
32 PO4 PO4 A A A A PO4 0.503937 0.930556
33 1DG 0.503401 0.922078
34 DG1 0.503401 0.922078
35 TXP 0.5 0.922078
36 NMN AMP PO4 0.492958 0.921053
37 XNP 0.492958 0.875
38 25L 0.492308 0.958904
39 25A 0.492063 0.972222
40 NMN 0.486726 0.888889
41 NGD 0.485714 0.935065
42 9JJ 0.481707 0.8875
43 2AM 0.477876 0.891892
44 ADP 0.458333 0.945205
45 PAP 0.451613 0.931507
46 A2D 0.445378 0.945205
47 AN2 0.442623 0.932432
48 7L1 0.441558 0.777778
49 ADP PO3 0.44 0.944444
50 SAP 0.44 0.896104
51 AGS 0.44 0.896104
52 M33 0.439024 0.906667
53 AR6 AR6 0.438849 0.945205
54 BA3 0.438017 0.945205
55 OAD 0.43609 0.92
56 ADP BMA 0.43609 0.92
57 DQV 0.435714 0.958904
58 HEJ 0.435484 0.945205
59 ATP 0.435484 0.945205
60 OOB 0.435115 0.958904
61 B4P 0.434426 0.945205
62 AP5 0.434426 0.945205
63 GAP 0.433071 0.92
64 0WD 0.432432 0.922078
65 2A5 0.432 0.87013
66 5FA 0.432 0.945205
67 AQP 0.432 0.945205
68 AT4 0.430894 0.907895
69 00A 0.428571 0.909091
70 DAL AMP 0.427481 0.932432
71 CA0 0.427419 0.92
72 ADP ALF 0.426357 0.871795
73 ALF ADP 0.426357 0.871795
74 9X8 0.425373 0.871795
75 ACP 0.424 0.92
76 NAJ PZO 0.423841 0.897436
77 9SN 0.423358 0.897436
78 ADP VO4 0.423077 0.932432
79 VO4 ADP 0.423077 0.932432
80 WAQ 0.422222 0.884615
81 V3L 0.421875 0.945205
82 ACQ 0.421875 0.92
83 ADQ 0.421053 0.92
84 AR6 0.420635 0.918919
85 APR 0.420635 0.918919
86 ATP A A A 0.42029 0.958333
87 CO7 0.419753 0.786517
88 3OD 0.419118 0.92
89 1ZZ 0.419118 0.841463
90 DLL 0.41791 0.958904
91 AD9 0.417323 0.92
92 NAX 0.416667 0.875
93 OVE 0.416667 0.857143
94 MYR AMP 0.416058 0.841463
95 AV2 0.415385 0.868421
96 A3P 0.414634 0.944444
97 NNR 0.414414 0.72973
98 OMR 0.413793 0.831325
99 6YZ 0.412214 0.92
100 ANP 0.410853 0.92
101 A1R 0.410448 0.860759
102 ABM 0.409836 0.893333
103 A 0.408333 0.944444
104 AMP 0.408333 0.944444
105 SON 0.408 0.933333
106 PPS 0.407692 0.829268
107 5AL 0.407692 0.932432
108 NAI 0.406897 0.909091
109 7D3 0.406504 0.857143
110 ADX 0.404762 0.829268
111 ATF 0.40458 0.907895
112 3UK 0.404412 0.945946
113 TYR AMP 0.404255 0.921053
114 AMP DBH 0.404255 0.894737
115 139 0.402685 0.875
116 50T 0.401575 0.906667
117 SRP 0.401515 0.907895
118 A A 0.40146 0.972222
119 B5V 0.40146 0.933333
120 A3R 0.4 0.860759
121 3AM 0.4 0.90411
122 B5M 0.4 0.921053
123 FA5 0.4 0.933333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YQD; Ligand: NAP; Similar sites found with APoc: 531
This union binding pocket(no: 1) in the query (biounit: 1yqd.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 1FWV SGA MAG FUC None
3 3A06 NDP 1.36612
4 3A06 FOM 1.36612
5 1HDG NAD 1.50602
6 3VPH OXM 1.6129
7 3VPH NAD 1.6129
8 2I3G NAP 1.63934
9 1ZGS XMM 1.63934
10 3GD4 NAD 1.63934
11 1N1G BCP 1.63934
12 3ABI NAD 1.64384
13 5ZI2 NAD 1.73913
14 5ZI2 ADP 1.73913
15 4Z0H NAD 1.79641
16 5EXK MET 1.81269
17 3FPZ AHZ 1.84049
18 1F06 2NP 1.875
19 1F06 NDP 1.875
20 2CDU ADP 1.91257
21 6C4T NA7 1.91257
22 1GZ4 ATP 1.91257
23 1UP7 NAD 1.91257
24 1QMG APX 1.91257
25 1H82 GZZ 1.91257
26 1H82 FAD 1.91257
27 5FJN BE2 1.91257
28 1TB4 PEJ 1.91257
29 5FJN FAD 1.91257
30 3OJO NAD 1.91257
31 4Z24 FAD 1.91257
32 1GV0 NAD 1.93548
33 3GXW SIN 1.94175
34 3WBF NAP 1.96721
35 3WBF API 1.96721
36 3FXU TSU 1.96721
37 5WQJ 7N3 2.0202
38 1B8U NAD 2.12766
39 1B8U OAA 2.12766
40 2G5C NAD 2.13523
41 2A92 NAI 2.18069
42 5YU3 NAD 2.18579
43 5YU3 PRO 2.18579
44 1V59 NAD 2.18579
45 5WJ6 B4A 2.18579
46 1X87 NAD 2.18579
47 4OOE FOM 2.18579
48 4OOE NDP 2.18579
49 5GSN NAP 2.18579
50 5I39 FAD 2.18579
51 5H6S HDH 2.18579
52 5VN0 NAI 2.18579
53 3C7A NAD 2.18579
54 4G8R 96P 2.18579
55 4GUS FAD 2.18579
56 4FWE FAD 2.18579
57 1V59 FAD 2.18579
58 4HSU FAD 2.18579
59 4GUT FAD 2.18579
60 2VVL FAD 2.18579
61 2VVM FAD 2.18579
62 3BRE C2E 2.23464
63 1UXG FUM 2.26537
64 1UXG NAD 2.26537
65 5JE8 NAD 2.31788
66 4Q9N NAI 2.34899
67 1PZG A3D 2.45902
68 1DLJ UGA 2.45902
69 1DLJ NAI 2.45902
70 3EF0 ALF 2.45902
71 1GR0 NAD 2.45902
72 4KQW NAP 2.45902
73 3B20 NAD 2.45902
74 1PS9 NAP 2.45902
75 3OND NAD 2.45902
76 3OND ADN 2.45902
77 3B1J NAD 2.45902
78 4JDR FAD 2.45902
79 1RYI GOA 2.45902
80 4J36 1HR 2.45902
81 5MBX SP5 2.45902
82 5MBX FAD 2.45902
83 4J36 FAD 2.45902
84 1RYI FAD 2.45902
85 2BKA NDP 2.47934
86 4C2W ANP 2.50896
87 3VOZ 04A 2.53968
88 2VAR KDF 2.55591
89 2VAR KDG 2.55591
90 5KKA 6V0 2.5641
91 4CSD MFU 2.57353
92 5F2T PLM 2.5974
93 1W8D NAP 2.64901
94 1W73 NAP 2.64901
95 1W6U NAP 2.64901
96 5OJL TXP 2.68456
97 3LZW NAP 2.71084
98 3LZW FAD 2.71084
99 5Y8L NAD 2.71186
100 5Y8L HUI 2.71186
101 1G6O ADP 2.72727
102 2ZJ1 ARJ 2.73224
103 2ZJ1 NAD 2.73224
104 3ICT ADP 2.73224
105 3ICS ADP 2.73224
106 3S5W NAP 2.73224
107 2D2I NAP 2.73224
108 1DJN ADP 2.73224
109 4R5M NAP 2.73224
110 3V1Y NAD 2.73224
111 1K1Y MAL 2.73224
112 2D7I NGA 2.73224
113 1Q0H NDP 2.73224
114 1Q0H FOM 2.73224
115 4R5M 4NO 2.73224
116 1PGP 6PG 2.73224
117 3H8V ATP 2.73973
118 1SOW NAD 2.7439
119 5DN9 NAD 2.74725
120 4WNP 3RJ 2.78746
121 1OMO NAD 2.79503
122 4CJX NAP 2.82132
123 1YS4 NAP 2.82486
124 1EZ4 NAD 2.83019
125 1DKU AP2 2.83912
126 5U5N NAD 2.86738
127 5NC1 NAG 2.95359
128 1RM4 NDP 2.96736
129 1NPD NAD 3.00546
130 1VI2 NAD 3.00546
131 1E5Q NDP 3.00546
132 1OBB NAD 3.00546
133 1OFL NGK GCD 3.00546
134 1C3V NDP 3.00546
135 2GSD NAD 3.00546
136 1XHC FAD 3.00546
137 1U1I NAD 3.00546
138 3WQQ NDP 3.00546
139 3WQQ IB3 3.00546
140 5GUD NDP 3.00546
141 3FW3 GLC 3.00752
142 4EDF UPG 3.03644
143 5MIT FAD 3.0581
144 5MIT NAP 3.0581
145 2BZ1 TAU 3.06122
146 3CIF NAD 3.06407
147 3CIF G3H 3.06407
148 1VM6 NAD 3.07018
149 2PK3 A2R 3.11526
150 2ZB3 NDP 3.11615
151 1WPQ NAD 3.15186
152 1J5P NAD 3.16206
153 4B4U NAP 3.27869
154 5F7U GLC GLC 3.27869
155 1Z82 NDP 3.27869
156 3C1O NAP 3.27869
157 3BOF HCS 3.27869
158 1Q8A HCS 3.27869
159 4ZUL UN1 3.31384
160 1EBF NAD 3.35196
161 5GZ6 NDP 3.37423
162 5GZ6 7C3 3.37423
163 1UI0 URA 3.41463
164 5XG5 A2G 3.44828
165 3OA2 NAD 3.45912
166 2CVZ NDP 3.46021
167 1WP4 NDP 3.46021
168 5G4L NDP 3.4965
169 1GUZ NAD 3.54839
170 1MV8 NAD 3.55191
171 5T9E NAP 3.55191
172 1MUU NAD 3.55191
173 4DPL NAP 3.55191
174 1RYD NDP 3.55191
175 1VJT NAD 3.55191
176 1H6C SIN 3.55191
177 4TSK NDP 3.55191
178 1H6C NDP 3.55191
179 5T9F TYR 3.55191
180 5T9F NAP 3.55191
181 2NAD NAD 3.55191
182 3CGD FAD 3.55191
183 3CGD COA 3.55191
184 3CGD NAD 3.55191
185 2B4R NAD 3.55191
186 2WPF FAD 3.55191
187 2B4R AES 3.55191
188 2WPF WPF 3.55191
189 4MDB RLT 3.55556
190 2Q46 NAP 3.55731
191 1DIG NAP 3.59477
192 1DIG L37 3.59477
193 4D79 ATP 3.62319
194 2HJR APR 3.65854
195 2CVQ NDP 3.66972
196 3WV8 ATP 3.66972
197 4JJF FE9 3.77907
198 2DT5 NAD 3.79147
199 4BVA NDP 3.82514
200 4XYB NDP 3.82514
201 3KB6 NAD 3.82514
202 4BVA T3 3.82514
203 3GGO NAI 3.82514
204 3GGO ENO 3.82514
205 1WOG 16D 3.82514
206 4IV9 TSR 3.82514
207 1O0S NAI 3.82514
208 4MP8 NAD 3.83481
209 4MP8 MLI 3.83481
210 2F5X ASP 3.84615
211 1ZQ9 SAM 3.85965
212 1OAA OAA 3.861
213 1Y8Q ATP 3.90625
214 5NUF NAD 3.91566
215 5NUE NAD 3.91566
216 4URF NAD 4.03226
217 1P77 ATR 4.09836
218 6F3N ADN 4.09836
219 6F3N NAD 4.09836
220 6F3M NAD 4.09836
221 1SC6 NAD 4.09836
222 1PJS NAD 4.09836
223 3ITJ CIT 4.09836
224 2AWN ADP 4.09836
225 1VBH PEP 4.09836
226 2GZ3 NAP 4.09836
227 1P31 EPU 4.09836
228 1ZH8 NAP 4.11765
229 2HMT NAI 4.16667
230 4KOA NDP 4.2042
231 1HYH NAD 4.20712
232 5X9D 80F 4.27632
233 1O6Z NAD 4.29043
234 4BGB ADP 4.30769
235 6AA8 NAD 4.37158
236 1ZK7 FAD 4.37158
237 3K5I AIR 4.37158
238 4YAC NAI 4.3771
239 5U5G NAP 4.40678
240 1CF2 NAP 4.45104
241 5CAE COA 4.47284
242 5CAE SIN 4.47284
243 5X20 NAD 4.48718
244 6BR7 BEF 4.51128
245 4PLT NAI 4.53172
246 4PLT OXM 4.53172
247 4E5N NAD 4.64481
248 1HKU NAD 4.64481
249 1J49 NAD 4.64481
250 2O4C NAD 4.64481
251 2PV7 NAD 4.64481
252 1J0X NAD 4.64481
253 1DSS NAD 4.64481
254 3NYC IAR 4.64481
255 3NYC FAD 4.64481
256 3RC1 NAP 4.64481
257 2Z48 NGA 4.64481
258 2BGM NAJ 4.67626
259 4FC7 NAP 4.69314
260 4FC7 COA 4.69314
261 1LTH NAD 4.70219
262 3H5N ATP 4.81586
263 1UJ5 5RP 4.84582
264 5Z2F NAP 4.90566
265 6CEP NAD 4.91803
266 6CEP OXM 4.91803
267 3NJ4 AFX 4.91803
268 3NJ4 NAD 4.91803
269 2NU8 COA 4.91803
270 3ULK NDP 4.91803
271 4KP7 NAP 4.91803
272 4KP7 1UQ 4.91803
273 2AHR NAP 4.91803
274 3D3W NAP 4.91803
275 1PR9 NAP 4.91803
276 2BD0 NAP 4.91803
277 5UAV TFB 4.96894
278 5UAV NDP 4.96894
279 2ZB4 NAP 5.04202
280 2ZB4 5OP 5.04202
281 1HSL HIS 5.04202
282 4L8V NAP 5.04451
283 1BXG NAD 5.05618
284 1BW9 NAD 5.05618
285 5TC4 NAD 5.06329
286 3RK1 ATP 5.06329
287 1C1X NAD 5.07042
288 4PLG NAI 5.08982
289 4PLG OXM 5.08982
290 1V6A TRE 5.12048
291 1CER NAD 5.13595
292 1GAD NAD 5.15152
293 4QBK 3NZ 5.15464
294 4XB2 NDP 5.19126
295 4XB2 HSE 5.19126
296 5J5Z FAD 5.19126
297 5MQ6 NDP 5.19126
298 4UHF BUA 5.19126
299 3T31 DCQ 5.19126
300 3T31 FAD 5.19126
301 4TQG NDP 5.26316
302 4CS9 AMP 5.29101
303 4XDY NAI 5.32544
304 4TR1 GSH 5.43478
305 4D3F NAP 5.46448
306 3BAZ NAP 5.46448
307 4E13 NAD 5.46448
308 2GLX NDP 5.46448
309 1GQ2 NAP 5.46448
310 2VYN NAD 5.46448
311 4YT4 FE9 5.46448
312 5BSH PRO 5.46448
313 3H9E NAD 5.46448
314 1T3D CYS 5.53633
315 5WQP NAP 5.55556
316 1YJQ NAP 5.61056
317 4MDH NAD 5.68862
318 3U4C NDP 5.69395
319 5MDH NAD 5.70571
320 2HK9 NAP 5.7377
321 1HYE NAP 5.7377
322 5E4R NAP 5.7377
323 2HK9 ATR 5.7377
324 3FWN ATR 5.7377
325 5X2N ALA 5.77778
326 6BFN DL1 5.84795
327 3B1F NAD 5.86207
328 1T26 NAI 5.90062
329 1T26 GBD 5.90062
330 9LDT NAD 6.01093
331 9LDB NAD 6.01093
332 5Z21 NAI 6.01093
333 2VHW NAI 6.01093
334 4Y9D NAI 6.01093
335 6A3J NAI 6.01093
336 2YYY NAP 6.01093
337 1FS5 TLA 6.01093
338 5Y80 IRE 6.08108
339 4XDZ NDP 6.12245
340 4JK3 NAD 6.28415
341 2NPX NAD 6.28415
342 2RAB NAD 6.28415
343 4J4H 1J1 6.28415
344 4J4H NAI 6.28415
345 2Z3Y F2N 6.28415
346 2RAB FAD 6.28415
347 6FMC DUE 6.32911
348 5F90 GLA GAL BGC 5VQ 6.41026
349 5XK9 DMA 6.46552
350 5AYV NAP 6.55738
351 4XQC 13D 6.55738
352 4XQC NAD 6.55738
353 2WA2 SAM 6.55738
354 4ZVV NAD 6.62651
355 4ZVV GN0 6.62651
356 1SAY PYR 6.6482
357 1I36 NAP 6.81818
358 4ZGS NAD 6.8306
359 1LDM NAD 6.99088
360 4HXY NDP 7.07763
361 1LSS NAD 7.10383
362 2GCG NDP 7.10383
363 5N6C NAD 7.10383
364 2GCG DGY 7.10383
365 5UR0 NAD 7.16332
366 1O94 ADP 7.1875
367 5EES NAP 7.28745
368 3QV1 NAD 7.31707
369 4RDH AMP 7.37705
370 4RDI ATP 7.37705
371 1F8G NAD 7.37705
372 1V8B NAD 7.37705
373 1WDK NAD 7.37705
374 5TOW ADN 7.37705
375 5TOW NAI 7.37705
376 2VT3 ATP 7.44186
377 1U8X NAD 7.65027
378 3DDN HPV 7.65027
379 3DAG FEG 7.82123
380 2OOR NAD 7.9235
381 1KYQ NAD 7.9235
382 6C4N NAP 7.9235
383 1NM5 NAD 7.9235
384 5U8U FAD 7.9235
385 1L7E NAI 7.9235
386 2AG8 NAP 7.98479
387 1WAP TRP 8
388 1LUA NAP 8.01394
389 3QWB NDP 8.08383
390 5Z20 NAI 8.11594
391 5N2I NAP 8.18966
392 5A1T NAI 8.21114
393 5A1T OXM 8.21114
394 4FN4 NAD 8.26772
395 6FLZ MMA 8.33333
396 1B7T ADP 8.33333
397 2Q0L NAP 8.36013
398 4JGT PYR 8.3612
399 5LD5 NAD 8.37989
400 4OM8 NAD 8.41424
401 1UWK URO 8.46994
402 1UWK NAD 8.46994
403 4YSX FAD 8.46994
404 5KVS NAP 8.57143
405 4CQM NAP 8.60656
406 5ZZ6 NAD 8.65385
407 5ZZ6 ADP 8.65385
408 5O4J 9KH 8.75912
409 5O4J PJL 8.75912
410 5O4J SAH 8.75912
411 1NVT NAP 9.01639
412 2YVJ NAI 9.01639
413 2YVF NAD 9.01639
414 2YVF FAD 9.01639
415 1RSG FAD 9.01639
416 1YY5 FAD 9.01639
417 3Q3C NAD 9.0301
418 1VJE MSE 9.03614
419 2EV9 NAP 9.12547
420 2EV9 SKM 9.12547
421 5A7Y SAH 9.29487
422 2F5Z FAD 9.375
423 5AOV NAP 9.52381
424 2F1K NAP 9.56284
425 2DBZ NAP 9.58084
426 5ZI9 FLC 9.61539
427 5M67 NAD 9.83607
428 3L9W AMP 9.83607
429 5M67 ADE 9.83607
430 5M67 3D1 9.83607
431 3HAD NAD 9.83607
432 1M0S CIT 10.1093
433 5L53 NAP 10.1852
434 6BII NAP 10.2102
435 1DRV A3D 10.2564
436 1LVL NAD 10.3825
437 1KOL NAD 10.6557
438 5BN3 ADP 10.929
439 5EIN NAP 11.1111
440 4UP3 NDP 11.1465
441 4JLS 3ZE 11.1842
442 1O8B ABF 11.4155
443 1LDN NAD 11.4754
444 3B6Z CO7 11.4754
445 1LJ8 NAD 11.7486
446 5A04 BGC 11.7486
447 1M2W NAD 11.7486
448 5A04 NDP 11.7486
449 1A5Z NAD 11.9122
450 2NVK NAP 12.0219
451 4YEE 4CQ 12.2222
452 1X7D ORN 12.2951
453 1X7D NAD 12.2951
454 2WQ4 SFU 12.8205
455 2B5W NAP 12.8852
456 3FZG SAM 13
457 4XZ3 COA 13.0435
458 3NGL NAP 13.0435
459 1NYT NAP 13.1148
460 2WDQ CBE 13.1148
461 3CMC NAD 13.1737
462 4II2 ATP 13.253
463 1MO9 FAD 13.388
464 1MO9 KPC 13.388
465 4PIV NDP 13.6612
466 1JAY NAP 13.6792
467 3SQP FAD 13.9344
468 2IZ1 ATR 14.2077
469 5W3K NDP 14.2077
470 5W3K 9TY 14.2077
471 5YEC ATP 14.2857
472 2BKX F6R 14.7541
473 2DC1 NAD 14.8305
474 4A0S NAP 15.0273
475 4WAS NAP 15.0273
476 4WAS COO 15.0273
477 1N9G NAP 15.3005
478 4YCA NDP 15.6463
479 4B7X NAP 15.847
480 5L95 AMP 16.25
481 5D4V SAH 16.6667
482 1X14 NAD 16.9399
483 1NVM NAD 17.3077
484 5XVH NAP 17.6471
485 6C4M NAP 18.0328
486 4RVU NDP 18.306
487 2FR1 NDP 18.306
488 2J8Z NAP 18.5792
489 4Y1B NAP 18.5792
490 5LWY OLB 18.6916
491 2RI1 GLP 18.7234
492 5OCM NAP 18.9003
493 5DOZ NDP 19.2308
494 5DP2 NAP 19.2982
495 2DM6 IMN 20.4918
496 2DM6 NAP 20.4918
497 1YKF NAP 24.0437
498 3JYN NDP 24.3077
499 1KEV NDP 24.3169
500 1YB5 NAP 27.9202
501 2DFV NAD 28.8184
502 3GFB NAD 28.8571
503 4JBI NDP 29.235
504 4RQU NAD 29.7814
505 2CDC XYP 30.0546
506 2CDC XYS 30.0546
507 2CDC NAP 30.0546
508 4IDC NDP 30.4217
509 4IDC 1XX 30.4217
510 1F8F NAD 30.6011
511 1PL6 NAD 31.7416
512 1PL6 572 31.7416
513 2JHF NAD 33.0601
514 1U3U BNF 33.3333
515 1U3U NAD 33.3333
516 1CDO NAD 33.3333
517 1R37 NAD 33.7176
518 1E3I CXF 35.5191
519 1D1T NAD 35.7924
520 2FZW NAD 37.2654
521 5O9F NAD 39.7727
522 5O9F 9ON 39.7727
523 1P0F NAP 39.8907
524 3RNM FAD 41.3793
525 4GKV NAD 43.4524
526 4W6Z 8ID 43.804
527 4W6Z ETF 43.804
528 3WLE NAD 44.2815
529 1H2B NAJ 45.1253
530 1LLU NAD 47.076
531 1RJW ETF 49.2625
Pocket No.: 2; Query (leader) PDB : 1YQD; Ligand: NAP; Similar sites found with APoc: 235
This union binding pocket(no: 2) in the query (biounit: 1yqd.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO4 PIH None
2 5Y77 FAD 1.0929
3 5WGR FAD 1.0929
4 2CUL FAD 1.2931
5 5CX6 CDP 1.36612
6 2R4J 13P 1.63934
7 2R4J FAD 1.63934
8 4MIG G3F 1.63934
9 3GD4 FAD 1.63934
10 6AYU MLI 1.72911
11 4JGP PYR 1.84332
12 1L1E SAH 1.91257
13 2CDU FAD 1.91257
14 1NAA 6FA 1.91257
15 1NAA ABL 1.91257
16 4PTN PYR 2.04082
17 6FSG FMN 2.04082
18 6B74 BEN 2.05761
19 2BMZ XLM 2.12766
20 5LOG SAH 2.14592
21 4RSL FAD 2.18579
22 4HA6 FAD 2.18579
23 5MZI FYK 2.18579
24 5YAP 8S0 2.18579
25 5MZI FAD 2.18579
26 5YAP NAI 2.18579
27 5VN0 FAD 2.18579
28 5O42 9JW 2.18978
29 5O42 BGC 2.18978
30 5O42 NAD 2.18978
31 1OC2 NAD 2.29885
32 1OC2 TDX 2.29885
33 4CQB MLI 2.45902
34 5OKL PAM 2.45902
35 4NTD FAD 2.45902
36 1UAY ADN 2.47934
37 1C0I BE2 2.47934
38 1C0I FAD 2.47934
39 3WGT FAD 2.59366
40 3WGT QSC 2.59366
41 4TXI FAD 2.73224
42 2RGJ FAD 2.73224
43 1D4D FAD 2.73224
44 1VKO NAD 2.73224
45 2ZXI FAD 2.73224
46 1RM0 D6P 2.73224
47 1RM0 NAI 2.73224
48 3S5W FAD 2.73224
49 2BRY FAD 2.73224
50 4MOP 2H5 2.73224
51 4RL4 PPV 2.83019
52 3ZNN 4WL 2.88184
53 3ZNN FAD 2.88184
54 4IF4 BEF 2.88462
55 1KZL CRM 2.88462
56 3R6K FUC GAL GLA 2.95082
57 5KMS NAD 3.00546
58 5KMS FAD 3.00546
59 5G3U FDA 3.00546
60 5DF1 NAP 3.00546
61 5DF1 58X 3.00546
62 5G3U ITW 3.00546
63 3VGL BGC 3.00546
64 1E6W NAD 3.00546
65 3E1T FAD 3.00546
66 5GUD 2IT 3.00546
67 2YG3 FAD 3.00546
68 2V6G NAP 3.02198
69 2AIQ BEN 3.0303
70 2AE2 NAP 3.07692
71 2AE2 PTO 3.07692
72 3L4S NAD 3.27381
73 1YKJ PHB 3.27869
74 1YKJ FAD 3.27869
75 5XWC 8GL 3.27869
76 5XWC 2IT 3.27869
77 5XWC NAP 3.27869
78 3K7M FAD 3.27869
79 3CGB FAD 3.27869
80 2HNK SAH 3.34728
81 5VEG FMN 3.37079
82 1VL8 NAP 3.37079
83 5J60 FAD 3.4375
84 3KLJ FAD 3.55191
85 3GEG NAD 3.55191
86 3IHG FAD 3.55191
87 5HSA FAS 3.55191
88 5DNK SAH 3.55191
89 5AHO TLA 3.57143
90 2AJH MET 3.57143
91 6F9Q NAD 3.67647
92 3AYI FAD 3.7448
93 3AYI HCI 3.7448
94 6EL3 NAP 3.82514
95 6FHO FAD 3.82514
96 3QVP FAD 3.82514
97 2Q7V FAD 3.82514
98 2RBK VN4 3.83142
99 4ZCC NAI 3.86905
100 4ZCC FAD 3.86905
101 3CBG SAH 3.87931
102 4D42 W0I 3.90071
103 4D42 NAP 3.90071
104 6GAR FAD 4.01146
105 2GV8 NDP 4.09836
106 5TS5 FAD 4.09836
107 1BZL GCG 4.09836
108 5TTJ FAD 4.09836
109 1BZL FAD 4.09836
110 3CTY FAD 4.09836
111 3O9Z NAD 4.16667
112 1BXK NAD 4.22535
113 5XWV 8H6 4.23387
114 2J5V PCA 4.37158
115 2IID FAD 4.37158
116 2IID PHE 4.37158
117 5KOK SAH 4.37158
118 1REO FAD 4.37158
119 3QJ4 FAD 4.37158
120 4BV6 FAD 4.37158
121 1F8Y 5MD 4.4586
122 3LA3 2FT 4.52675
123 3AXB FAD 4.64481
124 3AXB PRO 4.64481
125 2QA1 FAD 4.64481
126 5WKR NAR 4.64481
127 2FKA BEF 4.65116
128 3F6R FMN 4.72973
129 6ECU SAH 4.74684
130 4X9M FAD 4.91803
131 2POC BG6 4.91803
132 4YNU FAD 4.91803
133 4AP3 FAD 4.91803
134 4AP3 NAP 4.91803
135 2Q1W NAD 4.91803
136 4YNU LGC 4.91803
137 5TWB FAD 4.94186
138 1Q1R FAD 5.10441
139 1M32 PLP 5.19126
140 1GPE FAD 5.19126
141 5TUF FAD 5.19126
142 5TUF TDC 5.19126
143 4M52 FAD 5.19126
144 1COY FAD 5.19126
145 2UVO NAG 5.26316
146 1ZEM NAD 5.34351
147 3GRU AMP 5.42373
148 3UOY FAD 5.46448
149 3UOY NAP 5.46448
150 5FFF NAP 5.46448
151 5FFF 5XC 5.46448
152 5FEU NAP 5.49828
153 2E5V FAD 5.50847
154 2XZ9 PYR 5.55556
155 3ETG GLU 5.58882
156 3ETG GTP 5.58882
157 3ETG NDP 5.58882
158 5OC1 FAD 5.7377
159 2B9W FAD 5.7377
160 6GAS FAD 5.74018
161 3EGI ADP 5.82524
162 4D04 NAP 6.01093
163 4D04 FAD 6.01093
164 6A3J SOE 6.01093
165 1D1Q 4NP 6.21118
166 5TUK FAD 6.28415
167 6F97 FAD 6.28415
168 5EZ7 FAD 6.28415
169 5F90 LMR 6.41026
170 5F90 GLA GAL 6.41026
171 1QH9 LAC 6.46552
172 5AYV KPL 6.55738
173 1HDR NAD 6.55738
174 5BJX NAD 6.55738
175 5BJX UDP 6.55738
176 2C49 ADN 6.62252
177 1L7N ALF 6.63507
178 4U8P FDA 6.82261
179 5JCM FAD 6.8306
180 5JCM ISD 6.8306
181 5JCM NAD 6.8306
182 2GN4 UD1 6.8306
183 2GN4 NDP 6.8306
184 5JCA FAD 6.8306
185 5JCA NDP 6.8306
186 1L5Y BEF 7.09677
187 3UCL NAP 7.37705
188 1V8B ADN 7.37705
189 2D5A COA 7.63889
190 5BVA FAD 7.65027
191 2HQM FAD 7.65027
192 3Q9N COA 7.80142
193 3FGZ BEF 7.8125
194 4XWT U5P 7.9235
195 4G5H NAP 7.9235
196 4G5H UD7 7.9235
197 1Y42 TYR 8.19672
198 4JNA FAD 8.23529
199 1TE2 PGA 8.40708
200 1INN MET 8.43373
201 5BUK FAD 8.46994
202 5JWC FAD 8.46994
203 2DKH FAD 8.46994
204 5KVS 6XR 8.57143
205 4OXX FMN 8.64198
206 3CYQ AMU 8.69565
207 2IVD FAD 8.74317
208 2GOO NDG 8.82353
209 1KC7 PPR 9.56284
210 3L9W GSH 9.83607
211 1P1C SAH 10.0503
212 1RP0 AHZ 10.2113
213 1LVL FAD 10.3825
214 2JB2 FAD 10.6557
215 2JB2 PHE 10.6557
216 2EWM NAD 10.929
217 6ER9 NAP 10.929
218 6ER9 FAD 10.929
219 3AB1 FAD 10.929
220 4YRY FAD 11.2319
221 4KRI SAH 11.4754
222 2QZZ NAP 11.7486
223 2QZZ EMF 11.7486
224 2BOS GLA GAL GLC NBU 11.7647
225 2BOS GLA GAL GLC 11.7647
226 2YN4 39J 11.8644
227 3T7S SAM 11.9403
228 1JBU BEN 12.6984
229 4XYM COA 13.0435
230 3NKS FAD 13.1148
231 2GAG NAD 13.3333
232 3AD8 NAD 15.2709
233 3FJG 3PG 23.9044
234 1JQY A32 26.2136
235 1R37 ETX 33.7176
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