Receptor
PDB id Resolution Class Description Source Keywords
1YU9 2.07 Å EC: 3.6.5.2 GPPNHP-BOUND RAB4A HOMO SAPIENS RAB GTPASE RAB4 VESICULAR TRAFFICKING PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS OF FAMILY-WIDE RAB GTPASE RECOGNIT RABENOSYN-5. NATURE V. 436 415 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GNP A:700;
Valid;
none;
submit data
522.196 C10 H17 N6 O13 P3 c1nc2...
MG A:701;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
SO4 A:601;
A:602;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BME 1.57 Å EC: 3.6.5.2 HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A HOMO SAPIENS GTP-BINDING PROTEIN VESICULAR TRANSPORT ENDOCYTOSIS PRENYLATION PROTEIN TRANSPORT TRANSPORT
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN RAB4A IN ITS ACTIVE AND INACTIVE CONFORMATIONS. FEBS LETT. V. 579 2821 2005
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 2A5J - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4LHW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 4LHV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 3NKV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 1Z0F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1Z0A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 1G17 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 1G16 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 3RAB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50% Homology Family (246)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 141 families.
1 1Z2A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1Z22 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1YZT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1YZU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 1Z08 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 1Z0I - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 4DKX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 2Y8E - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 2A5J - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4LHW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 4LHV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 2P2L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 2W2V - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
14 1MH1 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 2WKP - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
16 2WKQ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
17 3RS3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
18 2CL6 - CAG C18 H23 N6 O16 P3 C[C@H](c1c....
19 5WDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
20 3TGP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
21 1P2T - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
22 4Q01 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
23 4M21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
24 821P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
25 1Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
26 6Q21 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
27 4L9W - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
28 4WA7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
29 3V4F - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
30 3K9N - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
31 4M1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
32 4XVQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
33 5V71 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
34 2QUZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
35 1CLU Kd = 5.4 nM DBG C23 H27 N8 O13 P3 c1ccc(cc1)....
36 4L8G - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
37 2RGD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
38 4PZY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
39 4LPK - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
40 4DLV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
41 4LRW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
42 2CLD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
43 4M1W - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
44 3L8Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
45 3LBH - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
46 721P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
47 1LF5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
48 1GNR - CAG C18 H23 N6 O16 P3 C[C@H](c1c....
49 4LUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50 2RGE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
51 4DLS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
52 4M22 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
53 4DLY - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
54 1ZW6 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
55 2RGC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
56 5V9L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
57 2CL0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
58 4TQA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
59 3RRZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
60 2EVW - XY2 C12 H15 N5 O4 CC(=O)N(C)....
61 2RGB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
62 4LDJ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
63 1XJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
64 1ZVQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
65 1P2S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
66 5V6V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
67 621P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
68 1P2V - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
69 2CL7 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70 3OIW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
71 4LV6 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
72 4DLT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
73 1P2U - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
74 5V6S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
75 3RS0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
76 5B30 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
77 5B2Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
78 3KKN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
79 4M1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
80 4M1Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
81 3I3S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
82 4OBE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
83 3RRY - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
84 1QRA - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
85 4LYJ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
86 121P - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
87 1RVD - DBG C23 H27 N8 O13 P3 c1ccc(cc1)....
88 2RGA - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
89 3RS7 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
90 5UHV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
91 2CLC - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
92 4EPT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
93 4EPY Kd = 340 uM 0QY C21 H21 N5 O c1ccc2c(c1....
94 4DLZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
95 1AGP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
96 1GNQ - CAG C18 H23 N6 O16 P3 C[C@H](c1c....
97 2Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
98 3RS2 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
99 4L9S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
100 4M1S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
101 4EPV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
102 5WDP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
103 4TQ9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
104 3K8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
105 3OIV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
106 4Q02 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
107 3LBI - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
108 3RSL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
109 1LF0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
110 1XCM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
111 421P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
112 4DLR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
113 2CE2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
114 4QL3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
115 4Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
116 4DLU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
117 1CTQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
118 3OIU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
119 3RS5 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
120 4EPW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
121 5WDQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
122 1IOZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
123 221P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
124 4LYH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
125 4DLX - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
126 4Q03 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
127 4PZZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
128 3KKM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
129 1JAI - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
130 3L8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
131 3RS4 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
132 3LBN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
133 4NMM - Y9Z C14 H22 N6 O12 P2 CC(=O)NCCO....
134 3RSO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
135 4XVR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
136 5P21 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
137 5F2E - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
138 4EPX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
139 4EPR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
140 4DLW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
141 5V9O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
142 2RGG - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
143 4LYF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
144 1JAH - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
145 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
146 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
147 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
148 1YZN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
149 3RWM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
150 3RWO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
151 3REG - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
152 2F9L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
153 2F9M - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
154 1YZK - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
155 1OIV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
156 2FE4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
157 2FFQ - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
158 2E9S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
159 5US4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
160 5UQW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
161 5USJ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
162 3NKV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
163 1HUQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
164 1Z07 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
165 1N6R - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
166 1Z0D - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
167 1N6H - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
168 1N6P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
169 1N6K - GDP AF3 n/a n/a
170 1N6N - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
171 1N6I - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
172 1R2Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
173 1N6L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
174 1N6O - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
175 1TU4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
176 1EK0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
177 1S8F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
178 1YZL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
179 1WMS - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
180 1D5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
181 1Z0F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
182 3E5H - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
183 4DSU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
184 4DST - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
185 4DSO - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
186 4DSN - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
187 1KAO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
188 3RAP - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
189 1YZQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
190 2GIL - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
191 1Z0A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
192 1KY2 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
193 1KY3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
194 2HT6 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
195 3KKO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
196 3KKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
197 3KKP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
198 1X1R - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
199 1X1S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
200 1T91 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
201 1VG8 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
202 2GCP - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
203 2GCN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
204 2J0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
205 3X1Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
206 3X1Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
207 3X1W - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
208 3X1X - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
209 4Z8Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
210 1G17 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
211 1G16 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
212 1M7B - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
213 2DPX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
214 3Q7Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
215 3Q7P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
216 3Q72 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
217 1U8Z - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
218 1U90 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
219 1U8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
220 1YVD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
221 5WDR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
222 5WDS - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
223 1Z06 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
224 3TH5 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
225 3SBD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
226 1OIX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
227 1OIW - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
228 2QRZ - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
229 1A4R Kd = 9.4 pM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
230 1KMQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
231 1DPF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
232 1FTN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
233 1A2B - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
234 4U5X - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
235 3Q85 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
236 1RYH - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
237 1RYF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
238 1VG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
239 3RAB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
240 1GWN - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
241 2EW1 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
242 4O25 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
243 4O2R - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
244 4O2L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
245 1XTQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
246 3SEA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GNP; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 GNP 1 1
2 GDP 0.839506 0.973684
3 GP3 0.82716 0.948718
4 GTP 0.809524 0.973684
5 GNH 0.807229 0.986842
6 G1R 0.77907 0.961039
7 GCP 0.77907 0.948718
8 GSP 0.770115 0.925
9 5GP 0.756098 0.960526
10 G 0.756098 0.960526
11 G2R 0.747253 0.936709
12 GMV 0.747126 0.948718
13 GAV 0.714286 0.936709
14 GP2 0.712644 0.936709
15 G2P 0.711111 0.936709
16 Y9Z 0.708333 0.880952
17 GDP MG 0.696629 0.9
18 GDD 0.690722 0.936709
19 GDC 0.690722 0.936709
20 GKE 0.690722 0.936709
21 GDP BEF 0.688889 0.878049
22 G5P 0.686869 0.948718
23 GPG 0.684211 0.936709
24 GTG 0.683673 0.91358
25 GFB 0.683673 0.936709
26 GDR 0.683673 0.936709
27 JB2 0.68 0.936709
28 GKD 0.68 0.936709
29 G3A 0.676768 0.948718
30 6CK 0.676768 0.91358
31 GDX 0.673267 0.948718
32 ALF 5GP 0.67033 0.86747
33 GTP MG 0.666667 0.9
34 BEF GDP 0.666667 0.86747
35 YGP 0.663265 0.879518
36 GCP G 0.659574 0.911392
37 GPD 0.656863 0.902439
38 GDP AF3 0.645833 0.86747
39 GDP ALF 0.645833 0.86747
40 JB3 0.641509 0.925
41 DBG 0.640351 0.974359
42 G3D 0.638298 0.960526
43 G4P 0.625 0.960526
44 GMP 0.621951 0.857143
45 NGD 0.62037 0.936709
46 GGM 0.618182 0.925926
47 0O2 0.616162 0.960526
48 G G 0.61 0.911392
49 2MD 0.603604 0.870588
50 CAG 0.60177 0.904762
51 U2G 0.590909 0.91358
52 FEG 0.590909 0.858824
53 GDP 7MG 0.590476 0.888889
54 MGD 0.587719 0.870588
55 ZGP 0.585586 0.848837
56 CG2 0.580357 0.91358
57 ANP 0.568421 0.922078
58 PGD 0.567797 0.902439
59 MD1 0.567797 0.870588
60 3GP 0.56044 0.922078
61 TPG 0.558333 0.822222
62 GH3 0.55 0.948052
63 FE9 0.546219 0.778947
64 GPX 0.539216 0.922078
65 G4M 0.539062 0.860465
66 DGI 0.536082 0.9
67 BGO 0.535088 0.901235
68 IDP 0.53125 0.947368
69 DGT 0.53 0.9
70 2GP 0.526882 0.935065
71 G1R G1R 0.520325 0.901235
72 I2C FE2 CMO CMO 0.516667 0.811111
73 U A G G 0.512605 0.911392
74 AGO 0.504202 0.91358
75 G A A A 0.504202 0.9
76 P2G 0.5 0.860759
77 G1G 0.5 0.902439
78 MGP 0.49505 0.936709
79 PGD O 0.492063 0.831461
80 6G0 0.490196 0.936709
81 P1G 0.489796 0.85
82 DGP 0.474227 0.8875
83 DG 0.474227 0.8875
84 G G U 0.473684 0.911392
85 IMP 0.463918 0.934211
86 G2Q 0.462963 0.936709
87 GPC 0.459677 0.858824
88 G C 0.459016 0.878049
89 GTA 0.448276 0.91358
90 G7M 0.444444 0.924051
91 MAP 0.439252 0.898734
92 G G G RPC 0.435484 0.853659
93 B4P 0.434343 0.871795
94 AP5 0.434343 0.871795
95 ADP 0.434343 0.896104
96 A2D 0.43299 0.871795
97 U G A 0.431655 0.86747
98 G G G C 0.426357 0.890244
99 SGP 0.425743 0.807229
100 AU1 0.425743 0.922078
101 BA3 0.424242 0.871795
102 35G 0.423077 0.909091
103 PCG 0.423077 0.909091
104 A G C C 0.423077 0.888889
105 C2E 0.423077 0.897436
106 APC G U 0.421875 0.864198
107 ATP 0.421569 0.896104
108 ACQ 0.419048 0.873418
109 5GP 5GP 0.419048 0.860759
110 AQP 0.417476 0.896104
111 5FA 0.417476 0.896104
112 01G 0.417391 0.880952
113 UNP 0.415842 0.810127
114 AN2 0.415842 0.909091
115 6AD 0.415094 0.821429
116 ITT 0.411765 0.846154
117 M33 0.411765 0.860759
118 G C C C 0.410448 0.901235
119 G U34 0.408 0.86747
120 ACP 0.407767 0.873418
121 APR 0.403846 0.871795
122 AR6 0.403846 0.871795
123 DG DG 0.403509 0.845238
124 A4P 0.403226 0.848837
125 UCG 0.402985 0.888889
126 AD9 0.4 0.873418
127 SAP 0.4 0.851852
128 AGS 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found: 438
This union binding pocket(no: 1) in the query (biounit: 2bme.bio3) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3PQC GDP 0.00000001863 0.6824 None
2 3IIJ ADP 0.00001594 0.55856 None
3 3DKP ADP 0.0001758 0.50705 None
4 1GXU 2HP 0.0002888 0.49546 None
5 2BEK ATP 0.0004813 0.45163 None
6 1W5T ANP 0.001389 0.43585 None
7 4A6F SEP 0.01285 0.43434 None
8 1LOJ URI 0.01234 0.42911 None
9 1W5T ADP 0.003265 0.42713 None
10 3W68 4PT 0.01123 0.41827 None
11 1KO8 6PG 0.0004116 0.4149 None
12 4GBM A3P 0.003092 0.41407 None
13 1LOJ U 0.0257 0.40225 None
14 4KFU ACP 0.000006448 0.60188 1.07527
15 1GOJ ADP 0.0000001352 0.70663 1.6129
16 4E03 ADP 0.00001695 0.54989 1.6129
17 3BOS CDP 0.0001052 0.51807 1.6129
18 1FP6 ADP 0.00004287 0.51783 1.6129
19 2C04 GCP 0.00006288 0.50451 1.6129
20 4ZNL BEF ADP 0.0001546 0.50358 1.6129
21 1G8S MET 0.01483 0.42014 1.6129
22 3FWY ADP 0.00001482 0.5328 2.15054
23 3UIE ANP 0.00004095 0.5249 2.15054
24 1R6B ADP 0.0001412 0.50548 2.15054
25 5K5Z ANP 0.0001734 0.46193 2.15054
26 4MKF AP5 0.002094 0.43322 2.15054
27 5DT6 GLU 0.01939 0.41646 2.15054
28 1BO4 COA 0.01481 0.41177 2.38095
29 4WOP CTP 0.0000637 0.49375 2.66667
30 2DPY ADP 0.00006895 0.54175 2.68817
31 3BFV ADP 0.00004155 0.538 2.68817
32 1H65 GDP 0.00001681 0.51337 2.68817
33 5I34 GDP 0.00009688 0.51337 2.68817
34 4IEE AGS 0.0003047 0.50151 2.68817
35 4Y4V DAL 0.001341 0.47889 2.68817
36 4OHY ANP 0.0001391 0.46584 2.68817
37 3H86 AP5 0.001255 0.43546 2.68817
38 5AOG IAC 0.02195 0.43203 2.68817
39 2Z5F A3P 0.005049 0.41158 2.68817
40 1CR1 TTP 0.0008656 0.40955 2.68817
41 4TQK NAG 0.0269 0.40785 2.68817
42 2PEZ DAT 0.0009911 0.43699 2.7933
43 2GJ8 ALF GDP 0.0000000002681 0.676 2.90698
44 2VWA PTY 0.04967 0.40608 2.9703
45 5M04 GDP 0.000000001383 0.77215 3.22581
46 5TSH ADP 0.000009112 0.59379 3.22581
47 4WZ6 ATP 0.00002402 0.57274 3.22581
48 5TSH ANP 0.00001046 0.56759 3.22581
49 3ZFD ANP 0.00000004471 0.52911 3.22581
50 2PL3 ADP 0.0001403 0.51857 3.22581
51 3FKQ ATP 0.00003786 0.51444 3.22581
52 3Q9L ATP 0.00004091 0.51292 3.22581
53 2VB6 ADP BEF 0.00003931 0.49288 3.22581
54 3TBK ANP 0.0007078 0.48917 3.22581
55 1FNN ADP 0.0001116 0.48813 3.22581
56 2Q2Y ADP 0.0003674 0.46415 3.22581
57 4PFO ADP 0.0001225 0.46398 3.22581
58 2Q2Y MKR 0.0003614 0.46322 3.22581
59 1F9V ADP 0.000001162 0.43057 3.22581
60 3BER AMP 0.006275 0.43028 3.22581
61 2VVG ADP 0.0000001632 0.42431 3.22581
62 2O66 FLC 0.02542 0.40939 3.7037
63 3DC4 ADP 0.0000005408 0.65121 3.76344
64 1V8K ANP 0.0000006762 0.62636 3.76344
65 4HI0 GDP 0.0000008579 0.57465 3.76344
66 1JJV ATP 0.00002887 0.56709 3.76344
67 4IHQ ADP 0.000141 0.51846 3.76344
68 2QZ4 ADP 0.000066 0.51513 3.76344
69 5BQ5 ADP BEF 0.00009241 0.50824 3.76344
70 4XGU ADP 0.000141 0.48869 3.76344
71 1IHU AF3 0.0001285 0.47594 3.76344
72 2OZE AGS 0.000215 0.47555 3.76344
73 1IHU ADP 0.0001584 0.46773 3.76344
74 1OYY AGS 0.002636 0.44893 3.76344
75 3KJI ADP 0.00006878 0.43625 3.76344
76 5MEX PAP 0.00231 0.43002 3.76344
77 4O48 ASP 0.01285 0.42567 3.76344
78 2QEN ADP 0.0002343 0.41856 3.76344
79 2KIN ADP 0.0000003202 0.417 3.76344
80 1HTW ADP 0.00004213 0.42334 3.79747
81 3P4X ADP 0.00005187 0.40843 3.87409
82 3GUZ PAF 0.02368 0.40775 3.97727
83 2XT3 ADP 0.0000002598 0.6844 4.30108
84 1YQT ADP 0.00001357 0.586 4.30108
85 1JI0 ATP 0.0000248 0.56484 4.30108
86 5L3W GDP 0.00001133 0.55119 4.30108
87 5N69 ADP 0.0000132 0.54141 4.30108
88 5LB3 ADP 0.00006954 0.53401 4.30108
89 4V03 ADP 0.00004 0.52538 4.30108
90 1G41 ADP 0.0001441 0.49915 4.30108
91 2GK6 ADP 0.0005035 0.49686 4.30108
92 4XTR ADP 0.0001339 0.48464 4.30108
93 2CHG ANP 0.0002076 0.48111 4.30108
94 3ZQ6 ADP ALF 0.00004256 0.47472 4.30108
95 5VGR GDP 0.0002885 0.47467 4.30108
96 3ZS9 ADP ALF 0.00004622 0.47352 4.30108
97 4XVU ATP 0.0001414 0.46977 4.30108
98 4XTR ATP 0.0001422 0.46967 4.30108
99 1VHT BA3 0.0006188 0.46932 4.30108
100 2WOJ ADP ALF 0.0000635 0.46818 4.30108
101 4A4Z ANP 0.004774 0.43616 4.30108
102 4PU6 ASP 0.007599 0.4355 4.30108
103 2QN6 GDP 0.0000000002837 0.80699 4.83871
104 4RD0 GDP 0.000000000004619 0.79146 4.83871
105 3MD0 GDP 0.000000001201 0.77525 4.83871
106 2W58 ADP 0.0000008374 0.671 4.83871
107 1G3Q ADP 0.00002946 0.53831 4.83871
108 2GDJ ANP 0.00008401 0.52289 4.83871
109 1ION ADP 0.00006129 0.51665 4.83871
110 4QOS ADP 0.0001181 0.50323 4.83871
111 4D81 ADP 0.000149 0.4929 4.83871
112 1Z6T ADP 0.000135 0.48955 4.83871
113 5J1J ANP 0.00006497 0.48381 4.83871
114 1P9B GDP 0.0002396 0.47831 4.83871
115 2ZTS ADP 0.0006266 0.45504 4.83871
116 4GOX A3P 0.000768 0.43923 4.83871
117 1LVG ADP 0.00000165 0.43299 4.83871
118 3H4S ADP 0.0000003495 0.42951 4.83871
119 4FRZ ADP 0.000001392 0.42811 4.83871
120 5E5U MLI 0.01116 0.42389 4.83871
121 3FYH ADP 0.001572 0.4229 4.83871
122 5X40 ACP 0.001125 0.41544 4.83871
123 1X6V ADP 0.0009614 0.4113 4.83871
124 1UKZ ADP 0.005746 0.40675 4.83871
125 1EXF GLY 0.01413 0.40609 4.83871
126 3IX9 MTX 0.02013 0.40138 4.83871
127 3KTA AP5 0.0002854 0.47989 4.94506
128 1XEX ATP 0.003129 0.40765 4.94506
129 4KBF AMP 0.000944 0.47663 5.20548
130 2RCN GDP 0.00000000005566 0.82815 5.37634
131 5GOE GDP 0.000000009734 0.69568 5.37634
132 3LRE ADP 0.0000005406 0.67156 5.37634
133 3B5J 12D 0.00001435 0.5772 5.37634
134 2OG2 MLI 0.00002406 0.55966 5.37634
135 3B9Q MLI 0.00006318 0.54665 5.37634
136 5GJC ATP 0.00004479 0.53639 5.37634
137 1XMV ADP 0.0001225 0.50846 5.37634
138 3B7G ANP 0.0001779 0.50064 5.37634
139 1NY5 ADP 0.0005137 0.46337 5.37634
140 3FVQ ATP 0.0006454 0.45026 5.37634
141 4WEI GLC GAL 0.005733 0.44681 5.37634
142 5H67 ATP 0.002515 0.44513 5.37634
143 3RC3 ANP 0.005448 0.43802 5.37634
144 5H56 ADP 0.001459 0.42722 5.37634
145 5H56 TYD 0.001459 0.42722 5.37634
146 5WRI A3P 0.002523 0.42111 5.37634
147 5WRJ A3P 0.003389 0.40928 5.37634
148 4BQS ADP 0.00004339 0.53707 5.68182
149 4B47 GDP 0.0000000001274 0.82461 5.91398
150 3U6B GDP 0.0000000001591 0.81972 5.91398
151 2BVN GNP 0.00000000001543 0.81475 5.91398
152 1YRB GDP 0.00000000008918 0.77965 5.91398
153 5JBQ GDP 0.0000000005801 0.77786 5.91398
154 1D8T GDP 0.0000000006022 0.77705 5.91398
155 4G5G GDP 0.0000000006135 0.77665 5.91398
156 3U6K GDP 0.000000001075 0.76463 5.91398
157 2WJG GDP 0.00000001147 0.71383 5.91398
158 2WIC GNP 0.000000009553 0.70659 5.91398
159 1G7C 5GP 0.0000001704 0.65593 5.91398
160 4PC3 GDP 0.00000004462 0.65527 5.91398
161 4R98 GNH 0.0000002205 0.6504 5.91398
162 4PPF FLC 0.000002328 0.63999 5.91398
163 4YDS ATP 0.000005194 0.60014 5.91398
164 3NHB ADP 0.00001223 0.58848 5.91398
165 4P4T GDP 0.000001979 0.56543 5.91398
166 1OXV ANP 0.0000383 0.54713 5.91398
167 1G6O ADP 0.00001874 0.5409 5.91398
168 1YTM ATP 0.0002758 0.46623 5.91398
169 1IN4 ADP 0.0006428 0.45456 5.91398
170 2BIF ANP 0.0004777 0.4515 5.91398
171 2BIF SIN 0.0008832 0.45137 5.91398
172 3VM7 GLC 0.01213 0.4411 5.91398
173 4MKG AP5 0.001807 0.43484 5.91398
174 3QKT ANP 0.0008226 0.43437 5.91398
175 1NJF AGS 0.0003942 0.42852 5.91398
176 4IOK XPO 0.00121 0.42753 5.91398
177 1NJF ADP 0.0002476 0.42361 5.91398
178 5G41 AP5 0.004356 0.42361 5.91398
179 2X7I CIT 0.009233 0.42196 5.91398
180 4QRH 0O2 0.003575 0.41808 5.91398
181 1BG2 ADP 0.0000003144 0.41765 5.91398
182 3R7F CP 0.01823 0.41746 5.91398
183 4IOK ADP 0.001485 0.41039 5.91398
184 1ZUI SKM 0.0002644 0.40186 5.95238
185 1OFH ADP 0.0002102 0.40967 6.32184
186 2VOH CIT 0.01361 0.41032 6.36943
187 2C77 GNP 0.000000000009242 0.78947 6.45161
188 2C78 GNP 0.000000000007879 0.78163 6.45161
189 1G6H ADP 0.000001152 0.66058 6.45161
190 1TQ4 GDP 0.00000001824 0.64697 6.45161
191 4YMU ATP 0.00001827 0.56342 6.45161
192 3EC1 GDP 0.000000008175 0.54364 6.45161
193 2VF7 ADP 0.0002985 0.48979 6.45161
194 2XAU ADP 0.0002794 0.4856 6.45161
195 2Z9I GLY ALA THR VAL 0.007231 0.43734 6.45161
196 1QHG ATP 0.003134 0.4319 6.45161
197 2ZPA ADP 0.0002627 0.42188 6.45161
198 2ZWS PLM 0.03788 0.4087 6.45161
199 3QF7 ANP 0.0009705 0.40147 6.45161
200 4OWK NGA 0.01184 0.42462 6.52174
201 2WJH GDP 0.000000006921 0.55267 6.62651
202 2WJH FLC 0.000000637 0.49284 6.62651
203 4DCT GDP 0.0000000002189 0.78568 6.98925
204 2AWN ADP 0.0000005093 0.68927 6.98925
205 4U00 ADP 0.000001502 0.65311 6.98925
206 4H1V GNP 0.000003392 0.56168 6.98925
207 2IS6 ADP 0.00003715 0.5404 6.98925
208 2B8W ALF 5GP 0.000002927 0.53421 6.98925
209 2D2F ADP 0.00026 0.51741 6.98925
210 1F5N GNP 0.000003873 0.51498 6.98925
211 1XP8 AGS 0.0003732 0.49705 6.98925
212 4R43 GDP 0.0003045 0.49526 6.98925
213 3DZD ADP 0.0001656 0.49079 6.98925
214 2JLR ANP 0.0002011 0.4869 6.98925
215 4R2I ANP 0.001163 0.47795 6.98925
216 3RLF ANP 0.0006559 0.44207 6.98925
217 4PJ3 ANP 0.002101 0.43992 6.98925
218 1K6M AGS 0.0008084 0.4383 6.98925
219 2GWH A3P 0.00662 0.41326 6.98925
220 5TQZ GLC 0.02359 0.40873 7.33333
221 1MKY GDP 0.0000000001534 0.80639 7.52688
222 4LC1 GDP 0.000000001503 0.75743 7.52688
223 2XTZ GSP 0.00000000005736 0.71725 7.52688
224 4ZKD GDP 0.00000000003975 0.70808 7.52688
225 5IRR GSP 0.000000004624 0.66429 7.52688
226 2NCD ADP 0.000001678 0.63331 7.52688
227 2XTN GTP 0.0000006454 0.56705 7.52688
228 5GVR LMR 0.00006021 0.5608 7.52688
229 2ZR9 DTP 0.00009039 0.52132 7.52688
230 3VX3 ADP 0.00006755 0.49775 7.52688
231 2FAH GDP 0.0007905 0.4595 7.52688
232 3COB ADP 0.0000002591 0.43421 7.52688
233 1L2T ATP 0.000989 0.4311 7.52688
234 4CS9 AMP 0.01722 0.40767 7.52688
235 1NRJ GTP 0.00000000004791 0.75857 7.59494
236 4P3Y GDP 0.0000000002601 0.55903 7.69231
237 3A1S GDP 0.00000005806 0.66879 8.06452
238 5I0H ADP BEF 0.0000002601 0.59706 8.06452
239 5L3V GDP 0.000002743 0.58022 8.06452
240 4LYA ATP 0.00001113 0.5587 8.06452
241 3EZ2 ADP 0.00002909 0.55318 8.06452
242 4P32 ADP 0.002371 0.42226 8.06452
243 3QXC ATP 0.003154 0.40244 8.06452
244 1WDT GTP 0.0000000003636 0.73035 8.60215
245 1JWY GDP 0.00000167 0.58277 8.60215
246 1JWY ADP 0.00001102 0.5589 8.60215
247 4TTQ ATP 0.00006685 0.5278 8.60215
248 5LTJ ADP 0.00006931 0.52039 8.60215
249 2OBM ADP 0.0004599 0.50611 8.60215
250 5LTJ BEF 0.0006794 0.50505 8.60215
251 1Y63 ADP 0.000007839 0.57378 8.69565
252 1G7S GDP 0.000000002966 0.73109 9.13978
253 4AG5 ADP 0.000005706 0.60577 9.13978
254 2WHX ADP 0.0000296 0.56801 9.13978
255 4IDN GNP 0.00002504 0.50604 9.13978
256 5XDR ADP 0.0001911 0.49914 9.13978
257 5HR5 ADP 0.0001672 0.48536 9.13978
258 2CE7 ADP 0.00005362 0.42471 9.13978
259 2I4I AMP 0.01004 0.40506 9.13978
260 1OS1 ATP 0.001527 0.40401 9.13978
261 5MVR ADP 0.00004464 0.53646 9.25926
262 4QM7 GTP 0.00003658 0.54073 9.35672
263 5CK5 GDP 0.0000000004427 0.7972 9.67742
264 3WXM GTP 0.000000000054 0.7183 9.67742
265 1FQJ ALF 0.00000005611 0.71176 9.67742
266 1FQK ALF 0.0000001237 0.70195 9.67742
267 1FQJ GDP 0.00000004447 0.61534 9.67742
268 1FQK GDP 0.0000001113 0.59878 9.67742
269 1GOT GDP 0.0000008414 0.5685 9.67742
270 1U0J ADP 0.0003042 0.50155 9.67742
271 5M7P ADP 0.0006472 0.45442 9.67742
272 5IFS ADP 0.00006796 0.42243 9.67742
273 1R0X ATP 0.00004075 0.40132 9.67742
274 1F2U ATP 0.001235 0.41786 10.1351
275 1DAR GDP 0.0000000275 0.69507 10.2151
276 2CBZ ATP 0.000001203 0.65827 10.2151
277 4LPS GDP 0.0000000982 0.65778 10.2151
278 2HF9 GSP 0.00000009014 0.63272 10.2151
279 5MZN ADP 0.0007081 0.48916 10.2151
280 3MWL 8OX 0.02592 0.40759 10.2151
281 1DCP HBI 0.03252 0.40465 10.5769
282 3TK1 GDP 0.0000000003143 0.81942 10.7527
283 3VMF GTP 0.00000000004544 0.7213 10.7527
284 2IYL GDP 0.000006247 0.57866 10.7527
285 5IRN ADP 0.00002901 0.52564 10.7527
286 5FTB ANP 0.0001096 0.50474 10.7527
287 5FHD ADP ALF 0.0001491 0.47779 10.7527
288 5KUT GDP 0.000000004812 0.54604 11.2903
289 2FNA ADP 0.0004746 0.45188 11.2903
290 1D2N ANP 0.003131 0.42058 11.2903
291 3OBT SLB 0.01336 0.4105 11.2903
292 1IXI 2HP 0.02737 0.40724 11.2903
293 5L3R GCP 0.000002259 0.5388 11.828
294 2V7Q ATP 0.00002198 0.53763 11.828
295 2V7Q ADP 0.00006668 0.52785 11.828
296 2CK3 ANP 0.0003758 0.46485 11.828
297 2CK3 ADP 0.0005784 0.44435 11.828
298 1W0J ADP 0.00003579 0.44032 11.828
299 1W0J ADP BEF 0.0003517 0.41892 11.828
300 4OI4 ATP 0.001609 0.42587 12.1739
301 4HSE ADP 0.00004049 0.53165 12.3656
302 1M7G ADX 0.0004643 0.44908 12.3656
303 1M7G ADP 0.0005414 0.44324 12.3656
304 1M7G AV2 0.00000482 0.43239 12.3656
305 2Y65 ADP 0.00000124 0.41777 12.3656
306 5L3S GNP 0.00001346 0.50719 12.5
307 5L3S G 0.03637 0.40245 12.5
308 1XKV ATP 0.0001346 0.50054 12.9032
309 4RZ3 ADP 0.0001021 0.49502 12.9032
310 2IXE ATP 0.000391 0.45545 12.9032
311 3IO3 ADP 0.0001598 0.43244 12.9032
312 2ZFI ADP 0.000003855 0.58901 13.4409
313 4PX9 ADP 0.00005136 0.54068 13.4409
314 1SQ5 ADP 0.0001819 0.50017 13.4409
315 4YS0 ADP 0.001203 0.44671 13.4409
316 1APZ ASP 0.01014 0.42897 13.4409
317 3EWA ANP 0.00003204 0.41617 13.4409
318 4Z7X 3CX 0.03171 0.41169 13.9785
319 1JJ7 ADP 0.000000934 0.66609 14.5161
320 2ODE ALF GDP 0.0000000005465 0.64172 14.5161
321 1PUJ GNP 0.000000002288 0.71471 15.0538
322 3E70 GDP 0.000003034 0.58592 15.0538
323 4CVN ADP 0.00001442 0.57709 15.3285
324 1SKQ GDP 0.000000006142 0.73935 16.129
325 3ZIA ATP 0.00003274 0.5361 16.3934
326 3ZIA ADP 0.00008429 0.5043 16.3934
327 1T5C ADP 0.0000009569 0.65817 16.6667
328 1BH2 GSP 0.0000000007921 0.63623 16.6667
329 1W7J ADP BEF 0.000005593 0.55189 16.6667
330 3WY9 GDP 0.0000000001687 0.81842 17.7419
331 3WYA GDP 0.0000000007613 0.77202 17.7419
332 3CNL GNP 0.00000000269 0.75751 17.7419
333 4ZG4 VO4 ADP 0.000000686 0.56595 17.7419
334 4WZA ACP 0.0000344 0.52797 17.7419
335 4WZA ADP 0.00003483 0.52773 17.7419
336 3BFX A3P 0.003034 0.42478 17.7419
337 1B7T ADP 0.00003984 0.52546 18.5897
338 5HCN GCP 0.0000000002743 0.78095 18.8172
339 1UJ2 C5P 0.002726 0.40418 18.8172
340 2HCJ GDP 0.0000000001396 0.56468 18.9189
341 1CS4 GSP 0.0000000002521 0.66599 19.3548
342 1AZT GSP 0.0000000003103 0.65073 19.3548
343 2C9O ADP 0.000125 0.4811 19.8925
344 3CX8 GSP 0.0000000001647 0.66045 20.4301
345 1ZCB GDP 0.0000001029 0.58706 20.4301
346 3AB3 GDP 0.00000004326 0.57157 20.4301
347 2ZJ5 ADP 0.01081 0.43007 20.4301
348 1QHH ATP 0.007276 0.42283 20.4301
349 1UPT GTP 0.000000000001664 0.81025 20.4678
350 2X77 GDP 0.0000000003114 0.7783 20.6349
351 1KK8 BEF ADP 0.000008841 0.54292 20.8633
352 3T34 GDP 0.0000144 0.51101 20.9677
353 1WF3 GNP 0.0000000007104 0.67655 23.6559
354 3A4M ADP 0.000008693 0.58851 23.6559
355 1SVI GDP 0.0000000004437 0.79715 24.1935
356 1D2E GDP 0.00000001452 0.67773 24.1935
357 1B0U ATP 0.000527 0.46761 24.7312
358 1M2O GNP 0.00000000009704 0.70811 25.2688
359 1KK1 GNP 0.000000004212 0.74764 25.8065
360 1SVK ALF GDP 0.0000000009339 0.68017 25.8065
361 2OM2 GDP 0.0000003446 0.59178 25.8065
362 5KDO GDP 0.0000005406 0.58332 25.8065
363 1Y3A GDP 0.0000004051 0.57546 25.8065
364 1GP2 GDP 0.0000006673 0.56645 25.8065
365 4LJ9 ACP 0.001287 0.46433 26.3441
366 4NCN GTP 0.0000000000007423 0.81389 26.8817
367 1F6B GDP 0.00000003029 0.68241 27.4194
368 5J1S ATP 0.001098 0.42925 27.6423
369 5FG3 GDP 0.00000000007034 0.83767 27.957
370 4NON GDP 0.00000003306 0.58366 27.957
371 2QTV GNP 0.0000000001094 0.69638 28.1437
372 4YLG GDP 0.000000003171 0.69826 29.4798
373 4TMZ GSP 0.000000000003196 0.78754 29.5699
374 1TAD GDP 0.0000000007878 0.63652 30.6452
375 1TAD ALF 0.0000000007878 0.63652 30.6452
376 5DI3 GNP 0.000000000008806 0.77958 31.1828
377 5KSP GDP 0.00000007016 0.66482 31.1828
378 5KSZ GCP 0.0000001467 0.64016 31.1828
379 2A5F GTP 0.00000000002233 0.74286 31.4286
380 4KAX GTP 0.000000000001288 0.74701 31.9527
381 2J59 GTP 0.00000000000349 0.78596 32.5301
382 1J2J GTP 0.00000000000372 0.7848 32.5301
383 1O3Y GTP 0.000000000007144 0.77302 32.5301
384 3AQ4 GDP 0.000000004781 0.72109 32.6087
385 3PCR GTP 0.00000000004132 0.74134 32.716
386 2W83 GTP 0.000000000003569 0.78555 32.7273
387 2FH5 GTP 0.0000000000001342 0.86895 32.7957
388 1S9D GDP 0.0000000107 0.70421 33.5366
389 1RE0 GDP 0.000000001071 0.5458 33.5366
390 3N5C GDP 0.000000002209 0.74917 33.9506
391 2ZEJ GDP 0.0000004528 0.55103 34.2391
392 3W5J GDP 0.0000004723 0.66693 34.9462
393 4J0Q GDP 0.0000000008782 0.78214 36.5591
394 4ZI2 GNP 0.0000000000004996 0.8324 38.172
395 3REF GDP 0.0000000001196 0.73157 38.172
396 5EE5 GTP 0.0000000000003173 0.84076 38.5965
397 1MR3 G3D 0.000000001986 0.56241 38.674
398 1KSH GDP 0.000000000000633 0.74395 38.7097
399 1ZJ6 G3D 0.000000003367 0.72843 38.7097
400 4GOJ GNP 0.0000000000005442 0.76031 39.1534
401 1ZD9 GDP 0.000000001119 0.70879 39.3617
402 1YZG GDP 0.000000004169 0.72395 39.6648
403 1R4A GNP 0.00000000000553 0.76757 40
404 1FZQ GDP 0.0000000004106 0.78527 40.884
405 4V0K GDP 0.0000002044 0.58134 41.4201
406 4YC7 GNP 0.0000000000009591 0.75159 41.4365
407 5JCP GDP ALF 0.00000000001736 0.80023 43.0108
408 1E96 GTP 0.000000000001388 0.78192 43.0108
409 1OW3 GDP 0.000000000251 0.62672 43.0108
410 5HPY GDP 0.0000000006336 0.72979 43.2432
411 1I4D GDP 0.000000000004407 0.89861 43.5484
412 2GCO GNP 0.000000000001279 0.85131 43.5484
413 4DID GDP 0.00000000005681 0.81393 43.5484
414 3DOE GTP 0.000000000003752 0.78465 43.5484
415 1NF3 GNP 0.000000000005589 0.75771 43.5484
416 5IRC GDP 0.000000001922 0.72888 43.5484
417 1DS6 GDP 0.000000000004042 0.62105 43.5484
418 3LXR GDP 0.0000000002398 0.77148 43.7838
419 2W2X GSP 0.000000000001198 0.73379 43.7838
420 4XOI GTP 0.0000000000007593 0.80273 43.8889
421 2WMO GTP 0.000000000001184 0.88017 44.086
422 2NGR GDP 0.00000000001875 0.83715 44.086
423 1GRN GDP 0.00000000001291 0.80602 44.086
424 2NGR AF3 0.00000003054 0.7161 44.086
425 1GRN AF3 0.00000004352 0.7081 44.086
426 4ITR GDP 0.000000001376 0.70483 44.086
427 1CXZ GSP 0.0000000000009013 0.82154 44.5055
428 1G4U GDP 0.000000003416 0.6874 44.5652
429 1G4U AF3 0.000007591 0.59979 44.5652
430 4XSH GSP 0.000000000002999 0.82232 44.6927
431 1TX4 ALF GDP 0.00000000000341 0.78637 45.1977
432 1HE1 GDP 0.0000000009218 0.70303 45.4545
433 1HE1 AF3 0.000003048 0.61217 45.4545
434 2FJU GSP 0.0000000000002344 0.75969 46.0674
435 2CJW GDP 0.00000000002348 0.84667 46.2366
436 5TB5 GDP 0.0000000000131 0.83098 48.6486
437 5TAR GDP 0.00000000001401 0.81669 48.6486
438 3WYG GTP 0.0000000000008599 0.75729 49.4506
Pocket No.: 2; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found: 12
This union binding pocket(no: 2) in the query (biounit: 2bme.bio4) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2XWL CTP 0.009937 0.40374 2.15054
2 2F5X ASP 0.02991 0.40502 2.68817
3 1Q8S MAN MMA 0.03096 0.40061 3.22581
4 3LA3 2FT 0.03206 0.40311 4.30108
5 3QXQ CE5 0.01796 0.40231 4.83871
6 1RRC ADP 0.00000449 0.40418 6.45161
7 2HXW FLC 0.03273 0.40082 6.98925
8 1VMK GUN 0.0262 0.40647 9.13978
9 2PZE ATP 0.000006499 0.40101 9.13978
10 1P4V GLY 0.009968 0.42905 12.9032
11 3BD9 A3P 0.01099 0.41263 13.4409
12 4FCW ADP 0.0005167 0.40001 25.2688
Pocket No.: 3; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found: 6
This union binding pocket(no: 3) in the query (biounit: 2bme.bio2) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1O8B ABF 0.01908 0.41029 2.68817
2 4XFM THE 0.02723 0.4086 3.76344
3 2PKA BEN 0.02318 0.41163 3.94737
4 4ME6 ADP 0.02969 0.40553 5.37634
5 2PMP C5P 0.03224 0.40684 6.25
6 1V3S ATP 0.007074 0.40523 8.62069
Pocket No.: 4; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found: 8
This union binding pocket(no: 4) in the query (biounit: 2bme.bio1) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4B9E FAH 0.04309 0.40274 1.66113
2 1DNP MHF 0.01916 0.41764 3.22581
3 3EYY MLI 0.03914 0.4011 3.44828
4 1P9B HDA 0.02869 0.40634 4.83871
5 4QEK GLC 0.009717 0.40621 4.83871
6 3CV2 OXL 0.03975 0.40088 6.45161
7 5HBN RPI 0.02649 0.40155 7.69231
8 3TD3 GLY 0.02601 0.40849 15.4472
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