Receptor
PDB id Resolution Class Description Source Keywords
1ZHW 1.7 Å NON-ENZYME: BINDING STRUCTURE OF YEAST OXYSTEROL BINDING PROTEIN OSH4 IN COMPLEX WITH 20-HYDROXYCHOLESTEROL SACCHAROMYCES CEREVISIAE OXYSTEROL STEROL BINDING PROTEIN LIPID BINDING PROTEIN
Ref.: STRUCTURAL MECHANISM FOR STEROL SENSING AND TRANSPORT BY OSBP-RELATED PROTEINS NATURE V. 437 154 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
HC2 A:1001;
 Valid;
 none;
 submit data
402.653 C27 H46 O2 CC(C)...
PB A:2001;
 Invalid;
 none;
 submit data
207.2 Pb [Pb+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1ZHX 1.5 Å NON-ENZYME: BINDING STRUCTURE OF YEAST OXYSTEROL BINDING PROTEIN OSH4 IN COMPLEX WITH 25-HYDROXYCHOLESTEROL SACCHAROMYCES CEREVISIAE OXYSTEROLSTEROL BINDING PROTEIN LIPID BINDING PROTEIN
Ref.: STRUCTURAL MECHANISM FOR STEROL SENSING AND TRANSPORT BY OSBP-RELATED PROTEINS NATURE V. 437 154 2005
Members (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 1ZHW - HC2 C27 H46 O2 CC(C)CCC[C....
2 1ZHY Kd = 300 nM CLR C27 H46 O CC(C)CCC[C....
3 1ZHT - HCR C27 H46 O2 C[C@H](CCC....
4 4F4B - L39 C27 H41 I O3 C[C@H](CCC....
5 1ZHX Kd = 55 nM HC3 C27 H46 O2 C[C@H](CCC....
6 4FES - 0T9 C28 H44 O3 CC[C@H](C)....
7 1ZHZ - ERG C28 H44 O CC(C)[C@@H....
70% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 1ZHW - HC2 C27 H46 O2 CC(C)CCC[C....
2 1ZHY Kd = 300 nM CLR C27 H46 O CC(C)CCC[C....
3 1ZHT - HCR C27 H46 O2 C[C@H](CCC....
4 4F4B - L39 C27 H41 I O3 C[C@H](CCC....
5 1ZHX Kd = 55 nM HC3 C27 H46 O2 C[C@H](CCC....
6 4FES - 0T9 C28 H44 O3 CC[C@H](C)....
7 1ZHZ - ERG C28 H44 O CC(C)[C@@H....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 1ZHW - HC2 C27 H46 O2 CC(C)CCC[C....
2 1ZHY Kd = 300 nM CLR C27 H46 O CC(C)CCC[C....
3 1ZHT - HCR C27 H46 O2 C[C@H](CCC....
4 4F4B - L39 C27 H41 I O3 C[C@H](CCC....
5 1ZHX Kd = 55 nM HC3 C27 H46 O2 C[C@H](CCC....
6 4FES - 0T9 C28 H44 O3 CC[C@H](C)....
7 1ZHZ - ERG C28 H44 O CC(C)[C@@H....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: HC2; Similar ligands found: 11
No: Ligand ECFP6 Tc MDL keys Tc
1 HC2 1 1
2 HCD 1 1
3 2DC 0.682353 0.902439
4 HC3 0.595506 1
5 CLR 0.58427 0.921053
6 HC9 0.549451 0.973684
7 PLO 0.505747 0.846154
8 0T9 0.442308 0.809524
9 L39 0.438095 0.772727
10 AND 0.436782 0.846154
11 C3S 0.427184 0.614035
Similar Ligands (3D)
Ligand no: 1; Ligand: HC2; Similar ligands found: 9
No: Ligand Similarity coefficient
1 HCR 0.9535
2 5JK 0.9482
3 XCA 0.9375
4 K2B 0.9266
5 ERG 0.9119
6 FIT 0.9079
7 TH2 0.9045
8 98H 0.8747
9 MUF 0.8727
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1ZHX; Ligand: HC3; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1zhx.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
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