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Receptor
PDB id Resolution Class Description Source Keywords
2B5W 1.6 Å EC: 1.1.1.47 CRYSTAL STRUCTURE OF D38C GLUCOSE DEHYDROGENASE MUTANT FROM MEDITERRANEI HALOFERAX MEDITERRANEI NUCLEOTIDE BINDING MOTIF OXIDOREDUCTASE
Ref.: ANALYSIS OF PROTEIN SOLVENT INTERACTIONS IN GLUCOSE DEHYDROGENASE FROM THE EXTREME HALOPHILE HALOFERAX MEDITERRANEI. PROC.NATL.ACAD.SCI.USA V. 103 4846 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FLC A:802;
Invalid;
none;
submit data
189.1 C6 H5 O7 C(C(=...
K A:901;
A:902;
A:903;
A:904;
A:905;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
submit data
39.098 K [K+]
NAP A:701;
Valid;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
ZN A:800;
Part of Protein;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2B5W 1.6 Å EC: 1.1.1.47 CRYSTAL STRUCTURE OF D38C GLUCOSE DEHYDROGENASE MUTANT FROM MEDITERRANEI HALOFERAX MEDITERRANEI NUCLEOTIDE BINDING MOTIF OXIDOREDUCTASE
Ref.: ANALYSIS OF PROTEIN SOLVENT INTERACTIONS IN GLUCOSE DEHYDROGENASE FROM THE EXTREME HALOPHILE HALOFERAX MEDITERRANEI. PROC.NATL.ACAD.SCI.USA V. 103 4846 2006
Members (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2B5W - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2VWG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 2B5V - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 2VWQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 2VWH - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 2VWP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2B5W - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2VWG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 2B5V - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 2VWQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 2VWH - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 2VWP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2B5W - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2VWG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 2B5V - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 2VWQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 2VWH - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 2VWP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NHD 0.68254 0.958904
10 NJP 0.661417 0.972973
11 NFD 0.658915 0.934211
12 NXX 0.619048 0.959459
13 DND 0.619048 0.959459
14 AMP NAD 0.606061 0.958904
15 ZID 0.605839 0.972603
16 NAQ 0.59854 0.922078
17 ATR 0.59292 0.917808
18 NAE 0.591241 0.946667
19 NDE 0.58042 0.986301
20 A22 0.571429 0.958904
21 NAJ 0.567164 0.986111
22 A2R 0.563025 0.932432
23 NDC 0.561644 0.922078
24 NA7 0.552846 0.907895
25 ODP 0.551471 0.935065
26 A2P 0.539823 0.930556
27 8ID 0.537313 0.910256
28 NPW 0.525547 0.8875
29 NZQ 0.521739 0.910256
30 CNA 0.521739 0.959459
31 NDP 0.514493 0.922078
32 PO4 PO4 A A A A PO4 0.503937 0.930556
33 1DG 0.503401 0.922078
34 DG1 0.503401 0.922078
35 TXP 0.5 0.922078
36 NMN AMP PO4 0.492958 0.921053
37 XNP 0.492958 0.875
38 25L 0.492308 0.958904
39 25A 0.492063 0.972222
40 NMN 0.486726 0.888889
41 NGD 0.485714 0.935065
42 9JJ 0.481707 0.8875
43 2AM 0.477876 0.891892
44 ADP 0.458333 0.945205
45 PAP 0.451613 0.931507
46 A2D 0.445378 0.945205
47 AN2 0.442623 0.932432
48 7L1 0.441558 0.777778
49 ADP PO3 0.44 0.944444
50 SAP 0.44 0.896104
51 AGS 0.44 0.896104
52 M33 0.439024 0.906667
53 AR6 AR6 0.438849 0.945205
54 BA3 0.438017 0.945205
55 OAD 0.43609 0.92
56 ADP BMA 0.43609 0.92
57 DQV 0.435714 0.958904
58 HEJ 0.435484 0.945205
59 ATP 0.435484 0.945205
60 OOB 0.435115 0.958904
61 B4P 0.434426 0.945205
62 AP5 0.434426 0.945205
63 GAP 0.433071 0.92
64 0WD 0.432432 0.922078
65 2A5 0.432 0.87013
66 5FA 0.432 0.945205
67 AQP 0.432 0.945205
68 AT4 0.430894 0.907895
69 00A 0.428571 0.909091
70 DAL AMP 0.427481 0.932432
71 CA0 0.427419 0.92
72 ADP ALF 0.426357 0.871795
73 ALF ADP 0.426357 0.871795
74 9X8 0.425373 0.871795
75 ACP 0.424 0.92
76 NAJ PZO 0.423841 0.897436
77 9SN 0.423358 0.897436
78 ADP VO4 0.423077 0.932432
79 VO4 ADP 0.423077 0.932432
80 WAQ 0.422222 0.884615
81 V3L 0.421875 0.945205
82 ACQ 0.421875 0.92
83 ADQ 0.421053 0.92
84 AR6 0.420635 0.918919
85 APR 0.420635 0.918919
86 ATP A A A 0.42029 0.958333
87 CO7 0.419753 0.786517
88 3OD 0.419118 0.92
89 1ZZ 0.419118 0.841463
90 DLL 0.41791 0.958904
91 AD9 0.417323 0.92
92 NAX 0.416667 0.875
93 OVE 0.416667 0.857143
94 MYR AMP 0.416058 0.841463
95 AV2 0.415385 0.868421
96 A3P 0.414634 0.944444
97 NNR 0.414414 0.72973
98 OMR 0.413793 0.831325
99 6YZ 0.412214 0.92
100 ANP 0.410853 0.92
101 A1R 0.410448 0.860759
102 ABM 0.409836 0.893333
103 A 0.408333 0.944444
104 AMP 0.408333 0.944444
105 SON 0.408 0.933333
106 PPS 0.407692 0.829268
107 5AL 0.407692 0.932432
108 NAI 0.406897 0.909091
109 7D3 0.406504 0.857143
110 ADX 0.404762 0.829268
111 ATF 0.40458 0.907895
112 3UK 0.404412 0.945946
113 TYR AMP 0.404255 0.921053
114 AMP DBH 0.404255 0.894737
115 139 0.402685 0.875
116 50T 0.401575 0.906667
117 SRP 0.401515 0.907895
118 A A 0.40146 0.972222
119 B5V 0.40146 0.933333
120 A3R 0.4 0.860759
121 3AM 0.4 0.90411
122 B5M 0.4 0.921053
123 FA5 0.4 0.933333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2B5W; Ligand: NAP; Similar sites found with APoc: 731
This union binding pocket(no: 1) in the query (biounit: 2b5w.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 3ABI NAD 1.12045
2 2IZ1 ATR 1.12045
3 5X20 NAD 1.28205
4 1M1B SPV 1.35593
5 1WVG APR 1.40056
6 3H9E NAD 1.44509
7 3V1Y NAD 1.48368
8 2GDZ NAD 1.49813
9 1J0X NAD 1.50602
10 2VYN NAD 1.51057
11 1GAD NAD 1.51515
12 4E5N NAD 1.51515
13 4JK3 NAD 1.5444
14 4J4H NAI 1.5444
15 4J4H 1J1 1.5444
16 5KKA 6V0 1.60256
17 2JAH NDP 1.61943
18 5XVH NAP 1.63399
19 5OJL TXP 1.67785
20 3CIF NAD 1.68067
21 3CIF G3H 1.68067
22 1UWK URO 1.68067
23 1UWK NAD 1.68067
24 1D4D FAD 1.68067
25 4EVQ PHB 1.68067
26 1FEC FAD 1.68067
27 5TUK FAD 1.68067
28 1L7E NAI 1.68067
29 4MIG G3F 1.68067
30 1GET NAP 1.68067
31 4KQW NAP 1.71429
32 1ZH8 NAP 1.76471
33 4MP8 MLI 1.76991
34 4MP8 NAD 1.76991
35 4L8V NAP 1.78042
36 4NTC FAD 1.79104
37 4PLG NAI 1.79641
38 4PLG OXM 1.79641
39 4KOA NDP 1.8018
40 9LDT NAD 1.80723
41 4ZVV GN0 1.80723
42 9LDB NAD 1.80723
43 4ZVV NAD 1.80723
44 2HJR APR 1.82927
45 2A92 NAI 1.86916
46 2J5S KTA 1.90114
47 2YY7 NAD 1.92308
48 2AHR NAP 1.9305
49 1E5Q NDP 1.96078
50 1F8G NAD 1.96078
51 2IXB NAD 1.96078
52 1V59 NAD 1.96078
53 2IXB A2G 1.96078
54 1QO8 FAD 1.96078
55 5BVA FAD 1.96078
56 1V59 FAD 1.96078
57 2A8X FAD 1.96078
58 1MO9 KPC 1.96078
59 1MO9 FAD 1.96078
60 2WET FAD 1.96078
61 5L4L NAP 1.97368
62 5JE8 NAD 1.98676
63 2VVG ADP 2
64 1K3A ACP 2.00669
65 2JAP NDP 2.02429
66 4R1S NAP 2.07715
67 2GLX NDP 2.10843
68 3RK0 AMP 2.1097
69 5GUD NDP 2.12314
70 5GVR LMR 2.13675
71 5Z75 NAD 2.14067
72 4M52 M52 2.14592
73 4M52 FAD 2.14592
74 3SJU NDP 2.15054
75 1AE1 NAP 2.1978
76 1P77 ATR 2.20588
77 2ZJ1 ARJ 2.2409
78 2ZJ1 NAD 2.2409
79 1UP7 NAD 2.2409
80 2YVF FAD 2.2409
81 2YVF NAD 2.2409
82 1X87 NAD 2.2409
83 4XYB NDP 2.2409
84 2ZB4 NAP 2.2409
85 1GR0 NAD 2.2409
86 2ZB4 5OP 2.2409
87 5XWV 8H6 2.2409
88 1SB8 UD2 2.2409
89 5XWV NDP 2.2409
90 5WGR FAD 2.2409
91 4JDR FAD 2.2409
92 2RAB NAD 2.2409
93 2GZ3 NAP 2.2409
94 1KAH HIS 2.2409
95 6AIN FAD 2.2409
96 2QA1 FAD 2.2409
97 1SB8 NAD 2.2409
98 5ZBR ANP 2.2409
99 1BXK NAD 2.25352
100 1YS4 NAP 2.25989
101 2ZB3 NDP 2.26629
102 1I36 NAP 2.27273
103 2ZAT NAP 2.30769
104 1S9A BEZ 2.33463
105 2PV7 NAD 2.34899
106 2DKN NAI 2.35294
107 2C29 NAP 2.37389
108 3L4S NAD 2.38095
109 3L4S 3PG 2.38095
110 6CEP NAD 2.39521
111 6CEP OXM 2.39521
112 2CFC NAD 2.4
113 1HDG NAD 2.40964
114 3AXB PRO 2.45536
115 4E13 NAD 2.4735
116 2G5C NAD 2.4911
117 3CTY FAD 2.50784
118 3WXB NDP 2.50896
119 3SQP FAD 2.51046
120 4ZGS NAD 2.52101
121 3OJO NAD 2.52101
122 6F3N ADN 2.52101
123 1MUU NAD 2.52101
124 1MV8 NAD 2.52101
125 6F3N NAD 2.52101
126 1K1Y MAL 2.52101
127 5KVS NAP 2.52101
128 6F3M NAD 2.52101
129 5U8U FAD 2.52101
130 4XFR CIT 2.52101
131 4K5S FAD 2.52101
132 1KEW NAD 2.52101
133 5ZYN FAD 2.52101
134 2E5V FAD 2.52101
135 5MZI FAD 2.52101
136 5MZI FYK 2.52101
137 5Y77 FAD 2.52101
138 4K5S PM0 2.52101
139 5KVS 6XR 2.52101
140 3GD4 NAD 2.52101
141 1KEW TYD 2.52101
142 4ZCC NAI 2.52101
143 4ZCC FAD 2.52101
144 1BXG NAD 2.52809
145 1BW9 NAD 2.52809
146 1LDN NAD 2.53165
147 1C1X NAD 2.53521
148 1KYQ NAD 2.55474
149 5THQ NDP 2.57353
150 3VPH NAD 2.58065
151 3VPH OXM 2.58065
152 1OC2 NAD 2.58621
153 1OC2 TDX 2.58621
154 5NII FAD 2.589
155 5Z20 NAI 2.6087
156 4YAC NAI 2.6936
157 1C3M MAN MAN 2.72109
158 4NBW NAD 2.72374
159 1SOW NAD 2.7439
160 2YVJ NAI 2.75229
161 2CVQ NDP 2.75229
162 2YVJ FAD 2.75229
163 5GZ6 7C3 2.76074
164 5GZ6 NDP 2.76074
165 2HMT NAI 2.77778
166 2JL1 NAP 2.78746
167 5G4L NDP 2.7972
168 1KJ8 GAR 2.80112
169 4R5M NAP 2.80112
170 1U8X NAD 2.80112
171 1X14 NAD 2.80112
172 2O4C NAD 2.80112
173 4TXI FAD 2.80112
174 4R5M 4NO 2.80112
175 4D04 NAP 2.80112
176 4D04 FAD 2.80112
177 2FR1 NDP 2.80112
178 1BZL GCG 2.80112
179 2BRY FAD 2.80112
180 1OBB NAD 2.80112
181 1BZL FAD 2.80112
182 2QRK AMP 2.80112
183 1VKO NAD 2.80112
184 3DAG FEG 2.80112
185 1U1I NAD 2.80612
186 5A96 GTP 2.81124
187 1O5I NAD 2.81124
188 1G0N PHH 2.82686
189 1G0N NDP 2.82686
190 3VY6 BGC BGC 2.83688
191 1XG5 NAP 2.86738
192 1HDR NAD 2.86885
193 1ORR NAD 2.88184
194 4EHU ANP 2.89855
195 1GV0 NAD 2.90323
196 1GUZ NAD 2.90323
197 2GN4 UD1 2.90698
198 2GN4 NDP 2.90698
199 5O42 9JW 2.91971
200 5O42 NAD 2.91971
201 5O42 BGC 2.91971
202 4Y9D NAI 2.95082
203 1FWV SGA MAG FUC 2.98507
204 2DM6 IMN 3.003
205 2DM6 NAP 3.003
206 4IDC NDP 3.01205
207 4IDC 1XX 3.01205
208 1XHL NDP 3.0303
209 1PJS NAD 3.08123
210 1EWK GLU 3.08123
211 4J1Q NDP 3.08123
212 5EVY FAD 3.08123
213 1V8B NAD 3.08123
214 5MSO NAP 3.08123
215 5YF9 NIO 3.08123
216 5E4R NAP 3.08123
217 4YT4 FE9 3.08123
218 3IHG FAD 3.08123
219 3LU1 NAD 3.08123
220 3L9W AMP 3.08123
221 3H5N ATP 3.11615
222 2QZZ EMF 3.14465
223 2QZZ NAP 3.14465
224 4G05 JZ3 3.15457
225 6DNT NAD 3.19767
226 5DP2 NAP 3.21637
227 5UXF 2BA 3.21637
228 5DOZ NDP 3.25444
229 5AOV NAP 3.27381
230 3WBF NAP 3.27869
231 3WBF API 3.27869
232 4BVA NDP 3.28358
233 4BVA T3 3.28358
234 2DBZ NAP 3.29341
235 6AA8 NAD 3.31126
236 1L7N ALF 3.31754
237 1B8U NAD 3.36134
238 3K5I AIR 3.36134
239 1B8U OAA 3.36134
240 2V6G NAP 3.36134
241 4B4U NAP 3.36134
242 6C4M NAP 3.36134
243 2Y6Q FAD 3.36134
244 6FHO FAD 3.36134
245 2AQJ FAD 3.36134
246 2AQJ TRP 3.36134
247 3LAD FAD 3.36134
248 4KVL PLM 3.36134
249 5NMX NAP 3.36134
250 1YKJ FAD 3.36134
251 1YKJ PHB 3.36134
252 5BUK FAD 3.36134
253 5MBX SP5 3.36134
254 5MBX FAD 3.36134
255 2Y6Q I7T 3.36134
256 1H5Q NAP 3.39623
257 4TSK NDP 3.42857
258 1WPQ NAD 3.4384
259 3RNM FAD 3.44828
260 1X1T NAD 3.46154
261 1YP1 LYS ASN LEU 3.46535
262 1OAA OAA 3.4749
263 4XDZ NDP 3.49854
264 3ICC NAP 3.52941
265 4B7X NAP 3.57143
266 4PLT NAI 3.62538
267 4PLT OXM 3.62538
268 4XQC NAD 3.64146
269 4KP7 NAP 3.64146
270 4XQC 13D 3.64146
271 4KP7 1UQ 3.64146
272 3WQQ NDP 3.64146
273 3WQQ IB3 3.64146
274 5UAO FAD 3.64146
275 1VJT NAD 3.64146
276 4OOE NDP 3.64146
277 1GY8 NAD 3.64146
278 4OOE FOM 3.64146
279 5EES NAP 3.64372
280 5N6C NAD 3.66667
281 1EDO NAP 3.68852
282 2I3G NAP 3.69318
283 5Y8L HUI 3.72881
284 5Y8L NAD 3.72881
285 1VL8 NAP 3.74532
286 1GZ6 NAI 3.76176
287 3H4V NAP 3.81944
288 5W3K 9TY 3.82353
289 5W3K NDP 3.82353
290 1CF2 NAP 3.85757
291 1FK8 NAD 3.89105
292 3CMC NAD 3.89222
293 4MDH NAD 3.89222
294 4BHN BH9 3.89222
295 2G2Y MLI 3.8961
296 3VYW SAM 3.8961
297 5MDH NAD 3.9039
298 5OVK NDP 3.90625
299 5NUF NAD 3.91566
300 5NUE NAD 3.91566
301 1V6A TRE 3.91566
302 2CDU ADP 3.92157
303 5JCM NAD 3.92157
304 1RM0 D6P 3.92157
305 5YAP NAI 3.92157
306 5JCM FAD 3.92157
307 5JCM ISD 3.92157
308 1RM0 NAI 3.92157
309 5YAP 8S0 3.92157
310 4JLZ UTP 3.92157
311 1PZG A3D 3.92749
312 2RH4 EMO 3.97112
313 2WA2 SAM 3.98551
314 2EWM NAD 4.01606
315 1T26 GBD 4.03727
316 1T26 NAI 4.03727
317 1UZN NAP 4.04858
318 3HGM ATP 4.08163
319 5FEU NAP 4.12371
320 3GGO NAI 4.14013
321 3GGO ENO 4.14013
322 1HYE NAP 4.15335
323 4RDH AMP 4.16667
324 3JQA NAP 4.16667
325 3BMO NAP 4.16667
326 4CM4 NAP 4.16667
327 3JQB NAP 4.16667
328 5JDI NAP 4.16667
329 4CM8 NAP 4.16667
330 3BMQ NAP 4.16667
331 3JQG NAP 4.16667
332 3JQF NAP 4.16667
333 3JQ7 NAP 4.16667
334 3JQ9 NAP 4.16667
335 4CMI NAP 4.16667
336 5JDC NAP 4.16667
337 5JCJ NAP 4.16667
338 3JQ8 NAP 4.16667
339 3BMN NAP 4.16667
340 4CLO NAP 4.16667
341 5K6A NAP 4.16667
342 4CLR NAP 4.16667
343 4CME NAP 4.16667
344 4CM9 NAP 4.16667
345 4RDI ATP 4.16667
346 1NVT NAP 4.18118
347 5GT9 NAP 4.18251
348 4D3F NAP 4.19355
349 5EPO NAP 4.19847
350 1DJN ADP 4.20168
351 1O94 ADP 4.20168
352 1LVL NAD 4.20168
353 2J8Z NAP 4.20168
354 5TOW ADN 4.20168
355 5TOW NAI 4.20168
356 1HKU NAD 4.20168
357 5VN0 NAI 4.20168
358 4U7W NDP 4.20168
359 2DTX BMA 4.20168
360 5TUF FAD 4.20168
361 5TUF TDC 4.20168
362 2R4J FAD 4.20168
363 2R4J 13P 4.20168
364 1ZQ9 SAM 4.21053
365 3IP6 PRO 4.21348
366 3QPB URA 4.25532
367 1XKQ NDP 4.28571
368 1O6Z NAD 4.29043
369 3NGL NAP 4.34783
370 1J5P NAD 4.34783
371 4D79 ATP 4.34783
372 1XHC FAD 4.35967
373 4O0L NDP 4.36364
374 1NXJ TLA 4.37158
375 4PTN GXV 4.37318
376 5CSS G3P 4.42478
377 5T9F NAP 4.42804
378 5T9F TYR 4.42804
379 5TC4 NAD 4.43038
380 3H8V ATP 4.45205
381 1VL0 NAI 4.45205
382 3WMX NAD 4.46927
383 2WD7 NAP 4.47761
384 6C4T NA7 4.48179
385 1GQ2 NAP 4.48179
386 1SAY PYR 4.48179
387 1K3T BRZ 4.48179
388 4G5H NAP 4.48179
389 4G5H UD7 4.48179
390 3GMB FAD 4.48179
391 3S5W NAP 4.48179
392 3BAZ NAP 4.5045
393 1HYH NAD 4.53074
394 4OM8 NAD 4.53074
395 2AG8 NAP 4.56274
396 5MIT NAP 4.58716
397 5MIT FAD 4.58716
398 4CQM NAP 4.5977
399 1USI PHE 4.62428
400 2QLX RM4 4.62963
401 2F1K NAP 4.6595
402 1SZO CAX 4.66926
403 5FFF NAP 4.66926
404 5FFF 5XC 4.66926
405 5GWT NAD 4.67626
406 4WOV 3SM 4.73186
407 1DRV A3D 4.7619
408 4DPL NAP 4.7619
409 5DN9 NAD 4.7619
410 3V1U NAD 4.7619
411 4EDF UPG 4.7619
412 2GMH FAD 4.7619
413 4UP3 NDP 4.77707
414 4NBU NAI 4.8
415 5ZZ6 NAD 4.80769
416 5ZZ6 ADP 4.80769
417 1CER NAD 4.83384
418 1YB5 NAP 4.8433
419 3HAD NAD 4.87013
420 1C3X 8IG 4.88722
421 1RP0 AHZ 4.92958
422 1Y1P NMN AMP PO4 4.97076
423 4PVD NDP 4.97076
424 1LSS NAD 5
425 5L95 AMP 5
426 4XDY NAI 5.02959
427 3AFN NAP 5.03876
428 6C4N NAP 5.04202
429 5MQ6 NDP 5.04202
430 1I2B USQ 5.04202
431 1I2B UPG 5.04202
432 1I2B NAD 5.04202
433 4X9M FAD 5.04202
434 4PIV NDP 5.04202
435 2GV8 NDP 5.04202
436 4YKG NAD 5.04202
437 3E1T FAD 5.04202
438 2GVC FAD 5.04202
439 4EIP FAD 5.04202
440 1P31 EPU 5.04202
441 2IVD FAD 5.04202
442 1R6D NAD 5.04451
443 1R6D DAU 5.04451
444 2B4Q NAP 5.07246
445 1DSS NAD 5.1051
446 2GCG NDP 5.15152
447 3O03 NAP 5.15464
448 4PVR ASP 5.16129
449 5N2I NAP 5.17241
450 3QWI NAP 5.18518
451 3JYN NDP 5.23077
452 5NM7 GLY 5.26316
453 4TQG NDP 5.26316
454 1VM6 NAD 5.26316
455 5A1T NAI 5.27859
456 5A1T OXM 5.27859
457 1OMO NAD 5.2795
458 5H81 NAP 5.32213
459 6EL3 NAP 5.32213
460 1Q9I TEO 5.32213
461 1Q9I FAD 5.32213
462 1A5Z NAD 5.32915
463 5OVL NAP 5.33333
464 5AHO TLA 5.35714
465 4XZ3 COA 5.38793
466 4Z0H NAD 5.38922
467 5K0A FAD 5.45455
468 3HSS MLA 5.46075
469 5JH2 A2P 5.48387
470 1Z17 ILE 5.52326
471 3ICS ADP 5.60224
472 3ICT ADP 5.60224
473 5FI3 NAP 5.60224
474 4Y1B NAP 5.60224
475 1PS9 NAP 5.60224
476 1PS9 FAD 5.60224
477 1VI2 NAD 5.66667
478 6BII NAP 5.70571
479 1J49 NAD 5.70571
480 5CAE COA 5.7508
481 5CAE SIN 5.7508
482 2B4R NAD 5.7971
483 2B4R AES 5.7971
484 1DIG NAP 5.88235
485 5LD5 NAD 5.88235
486 1GZ4 ATP 5.88235
487 2D2I NAP 5.88235
488 1DIG L37 5.88235
489 3T31 DCQ 5.88235
490 3T31 FAD 5.88235
491 6F9Q NAD 5.88235
492 5X68 FAD 5.88235
493 1NPD NAD 5.90278
494 2QHS OCA 5.90717
495 1LTH NAD 5.95611
496 3AD8 NAD 6.06061
497 3AD8 FAD 6.06061
498 3AD8 PYC 6.06061
499 5ZI2 NAD 6.08696
500 5ZI2 ADP 6.08696
501 4TM3 FAD 6.09481
502 4YCA NDP 6.12245
503 1UXG FUM 6.14887
504 1UXG NAD 6.14887
505 2DT5 NAD 6.16114
506 1Q0H NDP 6.16247
507 1Q0H FOM 6.16247
508 3CGD FAD 6.16247
509 3CGD COA 6.16247
510 3CGD NAD 6.16247
511 3UOY NAP 6.16247
512 3UOY FAD 6.16247
513 3B20 NAD 6.19469
514 2P3V SRT 6.25
515 1LUA NAP 6.27178
516 3QDC RET 6.27615
517 1X7D ORN 6.28571
518 1X7D NAD 6.28571
519 3OA2 NAD 6.28931
520 6FS8 E4Z 6.34146
521 5D4V SAH 6.34328
522 1NVM NAD 6.37681
523 2YYY NAP 6.41399
524 3A06 NDP 6.44258
525 5M67 ADE 6.44258
526 5M67 NAD 6.44258
527 5M67 3D1 6.44258
528 5MLR GRQ 6.44258
529 3A06 FOM 6.44258
530 5MLR NAP 6.44258
531 2NPX NAD 6.44258
532 5BJX NAD 6.44258
533 5BJX UDP 6.44258
534 2GSD NAD 6.44258
535 2Q1W NAD 6.44258
536 5BSH PRO 6.4982
537 2VT3 ATP 6.51163
538 1RM4 NDP 6.52819
539 1JJ7 ADP 6.53846
540 2CVZ NDP 6.57439
541 5X9D 80F 6.57895
542 2WPB ZZI 6.57895
543 1JAY NAP 6.60377
544 3KIF GDL 6.60377
545 3TN7 NJP 6.61479
546 4NBT NAD 6.66667
547 2JBH 5GP 6.66667
548 1N1G BCP 6.72269
549 2DC1 NAD 6.77966
550 1WP4 NDP 6.92042
551 2NU8 COA 6.94444
552 3NJ4 AFX 7.0028
553 3NJ4 NAD 7.0028
554 4HXY NDP 7.0028
555 4XB2 NDP 7.16418
556 4XB2 HSE 7.16418
557 1RPN NDP 7.16418
558 3ORF NAD 7.17131
559 4URG C2E 7.18563
560 2BGM NAJ 7.19424
561 6A0S NDP 7.22892
562 6A0S HSE 7.22892
563 1O5O U5P 7.23982
564 1EBF NAD 7.28291
565 3UCL NAP 7.28291
566 3UCL CYH 7.28291
567 3UCL FAD 7.28291
568 6ER9 NAP 7.28291
569 6ER9 FAD 7.28291
570 1LDM NAD 7.29483
571 3WV8 ATP 7.33945
572 3O9Z NAD 7.37179
573 3O9Z AKG 7.37179
574 1NM5 NAD 7.38916
575 3QV1 NAD 7.4184
576 1EQ2 NAP 7.41935
577 4D06 NAR 7.42049
578 1GEG NAD 7.42188
579 2VQ5 HBA 7.46269
580 2PK3 A2R 7.47664
581 2Q46 NAP 7.50988
582 4J36 1HR 7.56302
583 4J36 FAD 7.56302
584 3KLJ FAD 7.56302
585 3B1F NAD 7.58621
586 4IF4 BEF 7.69231
587 1NYT NAP 7.74908
588 3C1O NAP 7.78816
589 1F06 2NP 7.8125
590 1F06 NDP 7.8125
591 6A3J NAI 7.84314
592 6A3J SOE 7.84314
593 5OCM NAP 7.90378
594 1YJQ NAP 7.92079
595 5Z2F NAP 7.92453
596 2EV9 SKM 7.98479
597 2EV9 NAP 7.98479
598 1JNR FAD 8
599 5UR0 NAD 8.02292
600 1NX4 AKG 8.05861
601 4EMI NAD 8.12325
602 1O0S NAI 8.12325
603 4EMJ FAD 8.12325
604 4EMI FAD 8.12325
605 3FPZ AHZ 8.28221
606 3TWO NDP 8.33333
607 3ULK NDP 8.35031
608 4W6Z 8ID 8.35735
609 4W6Z ETF 8.35735
610 3CH6 NAP 8.39161
611 3CH6 311 8.39161
612 2VHW NAI 8.40336
613 2WPF FAD 8.40336
614 2WPF WPF 8.40336
615 5AYV KPL 8.41424
616 5AYV NAP 8.41424
617 1U7T NAD 8.42912
618 4RF2 NAP 8.45588
619 2AE2 PTO 8.46154
620 2AE2 NAP 8.46154
621 2OOR NAD 8.62069
622 1EZ4 NAD 8.80503
623 1E3W NAD 8.81226
624 5U5G NAP 8.81356
625 1E6W NAD 8.84615
626 1Z82 NDP 8.95522
627 4OPC PGT 8.96359
628 3OND NAD 8.96359
629 3OND ADN 8.96359
630 4OPC FDA 8.96359
631 5WQP NAP 8.97436
632 5JY6 NAD 8.98876
633 4YSX FAD 9.04255
634 5JCA NDP 9.07173
635 3L8G GMB 9.09091
636 5Z21 NAI 9.2437
637 4JBI NDP 9.2437
638 1WDK NAD 9.2437
639 5J5Z FAD 9.2437
640 1QMG APX 9.2437
641 5DF1 58X 9.2437
642 5DF1 NAP 9.2437
643 5YU3 PRO 9.30233
644 5YU3 NAD 9.30233
645 1TB4 PEJ 9.52381
646 5KMS NAD 9.52381
647 1JT2 FER 9.70149
648 4J7U YTZ 9.72222
649 4J7U NAP 9.72222
650 2HK9 ATR 9.81818
651 2HK9 NAP 9.81818
652 1W8D NAP 9.93377
653 1W73 NAP 9.93377
654 1DQN IMU 10
655 1D1T NAD 10.084
656 1KOL NAD 10.084
657 3QWB NDP 10.1796
658 1P0F NAP 10.3641
659 1U3U NAD 10.3641
660 1U3U BNF 10.3641
661 5U5N NAD 10.3943
662 5T2U NAP 10.4839
663 5ZEC NAP 10.5263
664 1W6U NAP 10.596
665 4A0S NAP 10.6443
666 4RVU NDP 10.8434
667 1C0I FAD 10.9244
668 1C0I BE2 10.9244
669 1ZEM NAD 11.0687
670 5UAV NDP 11.1801
671 5UAV TFB 11.1801
672 2JHF NAD 11.2045
673 2FZW NAD 11.4846
674 1E3I CXF 11.4846
675 1UY4 XYP XYP XYP XYP 11.7241
676 4GKV NAD 12.2024
677 1YKF NAP 12.2159
678 1SC6 NAD 12.3249
679 1LLU NAD 12.5731
680 5YEC ATP 12.605
681 2Q0L NAP 12.8617
682 2Q0L FAD 12.8617
683 1YQD NAP 12.8852
684 1N9G NAP 12.8852
685 4WAS NAP 12.8852
686 4WAS COO 12.8852
687 2Q7V FAD 12.9231
688 2BOS GLA GAL GLC 13.2353
689 2BOS GLA GAL GLC NBU 13.2353
690 3KB6 NAD 13.4731
691 3SJ7 NDP 13.4921
692 1Z0N BCD 13.5417
693 5A04 BGC 13.5693
694 5A04 NDP 13.5693
695 1DLJ NAI 14.0056
696 1DLJ UGA 14.0056
697 5G6U TRP 14.1762
698 5O4J 9KH 14.2336
699 5O4J SAH 14.2336
700 6CI9 NAP 14.2857
701 1QH9 LAC 14.6552
702 1L5Y BEF 14.8387
703 5VKT NAP 14.8459
704 2F6U CIT 14.9573
705 4RQU NAD 15.126
706 1C3V NDP 16.7347
707 1CDO NAD 16.8067
708 1C4Q GLA GAL BGC 17.3913
709 2P39 SCR 17.4194
710 4CJX NAP 18.2073
711 5ODQ FAD 18.7675
712 1RJW ETF 20.059
713 2GAG NAD 21.2121
714 1R37 NAD 21.6138
715 1R37 ETX 21.6138
716 2F5Z FAD 21.875
717 3WLE NAD 21.9941
718 5EIN NAP 22.2222
719 3B1J NAD 24
720 2IMG MLT 24.5033
721 5O9F 9ON 25
722 5O9F NAD 25
723 4OSP NAP 25.8555
724 1PL6 NAD 29.7753
725 1PL6 572 29.7753
726 1H2B NAJ 30.2521
727 1H2B OCA 30.2521
728 2DFV NAD 32.853
729 3GFB NAD 41.4286
730 1KEV NDP 42.1652
731 1F8F NAD 43.4174
Pocket No.: 2; Query (leader) PDB : 2B5W; Ligand: NAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2b5w.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
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