Receptor
PDB id Resolution Class Description Source Keywords
2BHW 2.5 Å NON-ENZYME: BINDING PEA LIGHT-HARVESTING COMPLEX II AT 2.5 ANGSTROM RESOLUTION PISUM SATIVUM LHC-II PHOTOSYNTHESIS LIGHT-HARVESTING MEMBRANE PROTEIN CHLOROPHYLL CHLOROPLAST CHROMOPHORE MEMBRANE PHOSPHORYLATION PHOTOSYSTEM I PHOTOSYSTEM II PLASTID THYLAKOID TRANSIT PEPTIDE TRANSMEMBRANE
Ref.: MECHANISMS OF PHOTOPROTECTION AND NONPHOTOCHEMICAL QUENCHING IN PEA LIGHT-HARVESTING COMPLEX AT 2.5 A RESOLUTION. EMBO J. V. 24 919 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CHL A:609;
A:610;
A:611;
A:612;
A:613;
A:614;
B:609;
B:610;
B:611;
B:612;
B:613;
B:614;
C:609;
C:610;
C:611;
C:612;
C:613;
C:614;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
907.472 C55 H70 Mg N4 O6 CCC1=...
CLA A:601;
A:602;
A:603;
A:604;
A:605;
A:606;
A:607;
A:608;
B:601;
B:602;
B:603;
B:604;
B:605;
B:606;
B:607;
B:608;
C:601;
C:602;
C:603;
C:604;
C:605;
C:606;
C:607;
C:608;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
DGD A:802;
B:802;
C:802;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
949.299 C51 H96 O15 CCCCC...
LHG A:801;
B:801;
C:801;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
722.97 C38 H75 O10 P CCCCC...
LUX A:501;
A:502;
B:501;
B:502;
C:501;
C:502;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
584.998 C40 H72 O2 CC1=C...
NEX A:503;
B:503;
C:503;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
600.87 C40 H56 O4 CC(=C...
XAT A:504;
B:504;
C:504;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
600.87 C40 H56 O4 C/C(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BHW 2.5 Å NON-ENZYME: BINDING PEA LIGHT-HARVESTING COMPLEX II AT 2.5 ANGSTROM RESOLUTION PISUM SATIVUM LHC-II PHOTOSYNTHESIS LIGHT-HARVESTING MEMBRANE PROTEIN CHLOROPHYLL CHLOROPLAST CHROMOPHORE MEMBRANE PHOSPHORYLATION PHOTOSYSTEM I PHOTOSYSTEM II PLASTID THYLAKOID TRANSIT PEPTIDE TRANSMEMBRANE
Ref.: MECHANISMS OF PHOTOPROTECTION AND NONPHOTOCHEMICAL QUENCHING IN PEA LIGHT-HARVESTING COMPLEX AT 2.5 A RESOLUTION. EMBO J. V. 24 919 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2BHW - LUX C40 H72 O2 CC1=C(C(C[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2BHW - LUX C40 H72 O2 CC1=C(C(C[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 2BHW - LUX C40 H72 O2 CC1=C(C(C[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: LUX; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 LUX 1 1
Ligand no: 2; Ligand: NEX; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 NEX 1 1
2 XAT 0.666667 0.921053
3 PID 0.438017 0.818182
Ligand no: 3; Ligand: XAT; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 XAT 1 1
2 NEX 0.666667 0.921053
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2bhw.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2BHW; Ligand: XAT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2bhw.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2BHW; Ligand: XAT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2bhw.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2bhw.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2BHW; Ligand: NEX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2bhw.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2bhw.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2BHW; Ligand: NEX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2bhw.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2BHW; Ligand: XAT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2bhw.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 2bhw.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 2bhw.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 2BHW; Ligand: LUX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 2bhw.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 2BHW; Ligand: NEX; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 2bhw.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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