Receptor
PDB id Resolution Class Description Source Keywords
2BS5 2.1 Å NON-ENZYME: BINDING LECTIN FROM RALSTONIA SOLANACEARUM COMPLEXED WITH 2- FUCOSYLLACTOSE RALSTONIA SOLANACEARUM SUGAR BINDING PROTEIN SUGAR RECOGNITION BETA-PROPELLER
Ref.: THE FUCOSE-BINDING LECTIN FROM RALSTONIA SOLANACEAR NEW TYPE OF {BETA}-PROPELLER ARCHITECTURE FORMED BY OLIGOMERIZATION AND INTERACTING WITH FUCOSIDE, FUCOSYLLACTOSE, AND PLANT XYLOGLUCAN. J.BIOL.CHEM. V. 280 27839 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BGC GAL FUC A:801;
A:901;
Valid;
Valid;
none;
none;
Kd = 250 nM
488.439 n/a O(C1O...
CL A:904;
Invalid;
none;
submit data
35.453 Cl [Cl-]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BS5 2.1 Å NON-ENZYME: BINDING LECTIN FROM RALSTONIA SOLANACEARUM COMPLEXED WITH 2- FUCOSYLLACTOSE RALSTONIA SOLANACEARUM SUGAR BINDING PROTEIN SUGAR RECOGNITION BETA-PROPELLER
Ref.: THE FUCOSE-BINDING LECTIN FROM RALSTONIA SOLANACEAR NEW TYPE OF {BETA}-PROPELLER ARCHITECTURE FORMED BY OLIGOMERIZATION AND INTERACTING WITH FUCOSIDE, FUCOSYLLACTOSE, AND PLANT XYLOGLUCAN. J.BIOL.CHEM. V. 280 27839 2005
Members (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 5AJB Kd = 25.7 uM FUC NAG GLA GAL n/a n/a
2 2BT9 Kd = 0.64 uM MFU C7 H14 O5 C[C@H]1[C@....
3 2BS6 - XYS GAL FUC n/a n/a
4 4I6S - FUL C6 H12 O5 C[C@H]1[C@....
5 5AJC - FUC NAG n/a n/a
6 3ZI8 - FU4 C6 H12 O4 C[C@H]1[C@....
7 2BS5 Kd = 250 nM BGC GAL FUC n/a n/a
70% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 3ZWE - FUC C6 H12 O5 C[C@H]1[C@....
2 3ZZV - NAG GAL FUC n/a n/a
3 3ZW2 Kd = 26.1 uM GLA NAG GAL FUC n/a n/a
4 5AJB Kd = 25.7 uM FUC NAG GLA GAL n/a n/a
5 2BT9 Kd = 0.64 uM MFU C7 H14 O5 C[C@H]1[C@....
6 2BS6 - XYS GAL FUC n/a n/a
7 4I6S - FUL C6 H12 O5 C[C@H]1[C@....
8 5AJC - FUC NAG n/a n/a
9 3ZI8 - FU4 C6 H12 O4 C[C@H]1[C@....
10 2BS5 Kd = 250 nM BGC GAL FUC n/a n/a
50% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 272 families.
1 3ZWE - FUC C6 H12 O5 C[C@H]1[C@....
2 3ZZV - NAG GAL FUC n/a n/a
3 3ZW2 Kd = 26.1 uM GLA NAG GAL FUC n/a n/a
4 5AJB Kd = 25.7 uM FUC NAG GLA GAL n/a n/a
5 2BT9 Kd = 0.64 uM MFU C7 H14 O5 C[C@H]1[C@....
6 2BS6 - XYS GAL FUC n/a n/a
7 4I6S - FUL C6 H12 O5 C[C@H]1[C@....
8 5AJC - FUC NAG n/a n/a
9 3ZI8 - FU4 C6 H12 O4 C[C@H]1[C@....
10 2BS5 Kd = 250 nM BGC GAL FUC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BGC GAL FUC; Similar ligands found: 235
No: Ligand ECFP6 Tc MDL keys Tc
1 LAT FUC 1 1
2 FUC LAT 1 1
3 FUC GAL GLC 1 1
4 GLC GAL FUC 1 1
5 BGC GAL FUC 1 1
6 BGC GLA GAL FUC 0.735294 1
7 DR2 0.695652 0.73913
8 FUC GAL NDG 0.695652 0.73913
9 NDG GAL FUC 0.695652 0.73913
10 FUL GAL NAG 0.695652 0.73913
11 FUC GAL NAG 0.695652 0.73913
12 FUC GAL NAG GAL BGC 0.675 0.73913
13 GLC GAL NAG GAL FUC FUC 0.642857 0.723404
14 BGC GAL NAG GAL FUC FUC 0.642857 0.723404
15 A2G GAL BGC FUC 0.617284 0.73913
16 GAL GLC 0.610169 0.970588
17 MAL MAL 0.610169 0.942857
18 GLA GAL 0.610169 0.970588
19 MAB 0.610169 0.970588
20 BMA GAL 0.610169 0.970588
21 CBK 0.610169 0.970588
22 LAT 0.610169 0.970588
23 GAL BGC 0.610169 0.970588
24 BMA BMA 0.610169 0.970588
25 BGC GLC 0.610169 0.970588
26 GLC GAL 0.610169 0.970588
27 GLA GLA 0.610169 0.970588
28 CBI 0.610169 0.970588
29 B2G 0.610169 0.970588
30 GLC BGC 0.610169 0.970588
31 MAL 0.610169 0.970588
32 LBT 0.610169 0.970588
33 BGC BMA 0.610169 0.970588
34 BGC GAL 0.610169 0.970588
35 N9S 0.610169 0.970588
36 XYS GAL FUC 0.605634 0.971429
37 GAL NDG FUC FUC 0.6 0.723404
38 FUC GAL NAG FUC 0.6 0.723404
39 FUC NAG GAL FUC 0.6 0.723404
40 GAL NAG FUC FUC 0.6 0.723404
41 FUC NDG GAL FUC 0.6 0.723404
42 FUC GAL NDG FUC 0.6 0.723404
43 BCW 0.6 0.723404
44 BDZ 0.6 0.723404
45 NAG GAL FUC 0.594595 0.73913
46 DR3 0.594595 0.73913
47 FUC GAL NAG A2G 0.590361 0.62963
48 FUC BGC GAL 0.588235 1
49 BMA BMA BMA BMA BMA BMA 0.571429 0.970588
50 MTT 0.571429 0.970588
51 BGC GLC GLC GLC GLC GLC GLC 0.571429 0.970588
52 MLR 0.571429 0.970588
53 GLC BGC BGC BGC BGC 0.571429 0.970588
54 CE5 0.571429 0.970588
55 GAL GAL GAL 0.571429 0.970588
56 GLC GLC GLC GLC GLC GLC GLC GLC 0.571429 0.970588
57 GLC BGC BGC 0.571429 0.970588
58 MT7 0.571429 0.970588
59 CE6 0.571429 0.970588
60 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.571429 0.970588
61 CEY 0.571429 0.970588
62 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.571429 0.970588
63 GLA GAL GLC 0.571429 0.970588
64 GLC GAL GAL 0.571429 0.970588
65 BGC BGC BGC BGC BGC BGC 0.571429 0.970588
66 BMA MAN BMA 0.571429 0.970588
67 BGC BGC BGC GLC 0.571429 0.970588
68 BGC GLC GLC GLC 0.571429 0.970588
69 MAN BMA BMA 0.571429 0.970588
70 MAN BMA BMA BMA BMA 0.571429 0.970588
71 GLC GLC BGC 0.571429 0.970588
72 CTR 0.571429 0.970588
73 B4G 0.571429 0.970588
74 CTT 0.571429 0.970588
75 CEX 0.571429 0.970588
76 MAN MAN BMA BMA BMA BMA 0.571429 0.970588
77 FUC GAL 0.571429 0.970588
78 GLC BGC BGC BGC BGC BGC 0.571429 0.970588
79 BGC GLC GLC GLC GLC 0.571429 0.970588
80 GLC GLC BGC GLC GLC GLC GLC 0.571429 0.970588
81 GLC BGC GLC 0.571429 0.970588
82 GLC GLC GLC GLC GLC 0.571429 0.970588
83 CT3 0.571429 0.970588
84 BMA BMA BMA 0.571429 0.970588
85 BGC GLC GLC 0.571429 0.970588
86 GLC GLC GLC GLC GLC GLC GLC 0.571429 0.970588
87 DXI 0.571429 0.970588
88 CE8 0.571429 0.970588
89 BMA BMA BMA BMA BMA 0.571429 0.970588
90 FUC GAL MAG FUC 0.558442 0.708333
91 FUC GAL NAG GAL FUC 0.554217 0.723404
92 GLA GAL NAG FUC GAL GLC 0.544444 0.73913
93 BHE 0.540541 0.790698
94 BMA BMA BMA BMA BMA BMA MAN 0.537313 0.942857
95 MAN BMA BMA BMA BMA BMA 0.537313 0.942857
96 FUC BHG 0.534247 0.790698
97 4YA 0.534247 0.790698
98 BHG FUC 0.534247 0.790698
99 MAN MAN BMA 0.530303 0.970588
100 GLA GAL BGC 0.529412 0.970588
101 BMA MAN MAN 0.529412 0.970588
102 GLA GAL GAL 0.529412 0.970588
103 FUC GLA GLA 0.528571 1
104 GLA GAL FUC 0.528571 1
105 GAL GAL FUC 0.528571 1
106 NAG FUC 0.528571 0.695652
107 GLA GLA FUC 0.528571 1
108 FUC GAL GLA 0.528571 1
109 GLC GAL NAG GAL FUC A2G 0.515789 0.693878
110 A2G GAL NAG FUC GAL GLC 0.515789 0.693878
111 G6D GLC ACI GLD GLC ACI GLD GLC BGC 0.511111 0.702128
112 GLC G6D ACI GLC 0.505882 0.809524
113 GLC ACI G6D BGC 0.505882 0.809524
114 GLC ACI GLD GLC 0.505882 0.809524
115 GLC G6D ADH GLC 0.505882 0.809524
116 BGC BGC BGC BGC 0.5 0.970588
117 BGC BGC BGC BGC BGC BGC BGC BGC 0.5 0.970588
118 ABD 0.493976 0.772727
119 NGA GAL BGC 0.493506 0.755556
120 ACG 0.48913 0.717391
121 A2G GAL NAG FUC 0.488636 0.693878
122 FUC NAG GAL 0.487179 0.73913
123 FUC NDG GAL 0.487179 0.73913
124 GAL NDG FUC 0.487179 0.73913
125 GAL NAG FUC 0.487179 0.73913
126 GLC ACI G6D GLC 0.483146 0.755556
127 GLC ACI GLD GAL 0.483146 0.755556
128 GLC GLC G6D ACI GLC GLC GLC 0.483146 0.809524
129 DAF GLC 0.481481 0.809524
130 DAF BGC 0.481481 0.809524
131 GAL FUC 0.477612 0.970588
132 LAT NAG GAL 0.47561 0.755556
133 BGC GAL NAG GAL 0.47561 0.755556
134 GAL NAG GAL BGC 0.47561 0.755556
135 GLC GLC GLC BGC 0.473684 0.970588
136 MAN MAN MAN GLC 0.472973 0.970588
137 DAF GLC GLC 0.470588 0.809524
138 ACI GLD GLC GAL 0.470588 0.809524
139 DAF BGC GLC 0.470588 0.809524
140 GLA MBG 0.46875 0.971429
141 BMA BMA GLA BMA BMA 0.467532 0.970588
142 BGC BGC BGC XYS GAL 0.464286 0.916667
143 GLC GAL NAG GAL 0.464286 0.755556
144 GAL BGC BGC XYS 0.4625 0.916667
145 ACR GLC GLC GLC 0.462366 0.755556
146 GLC GLC DAF BGC 0.462366 0.755556
147 GLC GLC AGL HMC GLC 0.462366 0.755556
148 GLC GLC ACI G6D GLC GLC 0.462366 0.755556
149 M6P MAN MAN 0.461538 0.767442
150 BGC FUC GAL FUC A2G 0.460674 0.723404
151 GLC FUC GAL FUC A2G 0.460674 0.723404
152 FUC GAL NAG NON FUC 0.457447 0.618182
153 GLC AGL GLC HMC 0.456522 0.73913
154 GAL NAG GAL FUC 0.453488 0.73913
155 GLA NAG GAL FUC 0.453488 0.73913
156 GAL NGA GLA BGC GAL 0.453488 0.755556
157 FUC BGC GAL NAG GAL 0.451613 0.73913
158 NAG GAL BGC 0.451219 0.755556
159 MAG FUC GAL 0.45 0.708333
160 ARE 0.446809 0.755556
161 AAO 0.446809 0.755556
162 FUC NAG 0.445946 0.717391
163 FUC GAL NGA 0.445783 0.755556
164 GLC GLC FRU 0.444444 0.846154
165 NGA GLA GAL BGC 0.44186 0.755556
166 FUC GAL A2G 0.439024 0.73913
167 A2G GLA FUC 0.439024 0.73913
168 FUC GLA A2G 0.439024 0.73913
169 FUC GL0 A2G 0.439024 0.73913
170 A2G GAL FUC 0.439024 0.73913
171 NGA GAL FUC 0.439024 0.73913
172 NLC 0.438356 0.755556
173 5GO 0.438356 0.647059
174 GAL NDG 0.438356 0.755556
175 NDG GAL 0.438356 0.755556
176 TXT 0.436782 0.790698
177 GAC 0.436782 0.790698
178 AC1 GLC AC1 BGC 0.434783 0.772727
179 ACI GLD GLC ACI G6D BGC 0.434783 0.772727
180 BMA BMA MAN 0.434783 0.942857
181 DAF GLC DAF GLC GLC 0.434783 0.772727
182 BGC GLC AC1 GLC GLC GLC AC1 0.434783 0.772727
183 ACI GLD GLC GLC GLC ACI GLD GLC GAL 0.434783 0.772727
184 ACI G6D GLC ACI G6D BGC 0.434783 0.772727
185 U63 0.434783 0.868421
186 FUC BGC GAL NAG 0.433333 0.73913
187 SGA BGC 0.430556 0.6875
188 BGC BGC GLC 0.430556 0.970588
189 3SA 0.430233 0.755556
190 GAL BGC BGC BGC XYS BGC XYS 0.428571 0.916667
191 BGC BGC BGC XYS BGC XYS GAL 0.428571 0.916667
192 GLA EGA 0.428571 0.971429
193 BGB 0.428571 0.790698
194 DEL 0.428571 0.942857
195 GLC GLC GLC GLC GLC GLC 0.428571 0.970588
196 ACR GLC 0.426966 0.755556
197 ACR GLC GLC GLC GLC 0.426966 0.755556
198 MMA MAN 0.426471 0.971429
199 DR5 0.426471 0.971429
200 MAN MAN 0.424242 0.970588
201 LAT GLA 0.424242 0.970588
202 2M4 0.424242 0.970588
203 ABC 0.424242 0.717391
204 BGC BGC 0.424242 0.970588
205 GLC GLC BGC XYS BGC XYS 0.423529 0.916667
206 ACR 0.422222 0.755556
207 QPS 0.422222 0.755556
208 GAL GAL GLC EMB MEC 0.421053 0.641509
209 RAM GTR RAM GTR RAM GTR 0.419753 0.692308
210 BGC BGC XYS BGC 0.416667 0.916667
211 NAG GAL FUC FUC A2G 0.414894 0.693878
212 FUC GAL NAG A2G FUC 0.414894 0.693878
213 OPM MAN MAN 0.414634 0.829268
214 AOG FUC 0.414634 0.66
215 XYS BGC BGC XYS BGC XYS BGC BGC BGC 0.413793 0.916667
216 HMC AGL GLC 0.413793 0.73913
217 BGC BGC BGC XYS BGC BGC 0.413793 0.916667
218 XYS BGC BGC BGC BGC XYS BGC BGC BGC 0.413793 0.916667
219 GLA MAN RAM RAM ABE MAN GLA 0.411765 0.894737
220 GAL XYS XYS BGC BGC BGC XYS GAL BGC 0.410526 0.916667
221 BGC BGC XYS BGC GAL XYS BGC XYS GAL 0.410526 0.916667
222 GLC BGC BGC XYS BGC XYS XYS GAL GAL 0.410526 0.916667
223 GLC BGC BGC XYS BGC XYS XYS GAL 0.410526 0.916667
224 GAL BGC BGC BGC XYS XYS 0.410526 0.916667
225 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.408163 0.755556
226 AIG FUC 0.407407 0.66
227 MAN MAN MAN BMA MAN MAN MAN 0.406593 0.971429
228 NAG MAN GAL MAN MAN NAG GAL 0.40625 0.708333
229 MAN MAN MAN BMA MAN 0.404762 0.970588
230 BGC BGC XYS BGC XYS BGC XYS 0.402299 0.916667
231 GLC BGC BGC XYS BGC XYS XYS 0.402299 0.916667
232 BGC BGC BGC XYS BGC XYS XYS 0.402299 0.916667
233 FUC NAG GLA GAL 0.402174 0.723404
234 EAG RAM RAM GLC RAM NAG RAM RAM GLC RAM 0.402062 0.68
235 AGL GLC HMC AGL GLC BGC 0.4 0.702128
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BS5; Ligand: BGC GAL FUC; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2bs5.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2BS5; Ligand: BGC GAL FUC; Similar sites found: 89
This union binding pocket(no: 2) in the query (biounit: 2bs5.bio1) has 35 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3TKA CTN 0.004267 0.48227 None
2 3KPE TM3 0.0007278 0.47364 None
3 1NU4 MLA 0.001348 0.44253 None
4 3BY8 MLT 0.005768 0.43873 None
5 4CO3 ATP 0.00022 0.43808 None
6 3BHO B4P 0.0237 0.42864 None
7 1QCA FUA 0.0001645 0.42797 None
8 1UO4 PIH 0.02578 0.42666 None
9 4FR3 LYS ARG ARG LYS SEP VAL 0.002875 0.42142 None
10 4FR3 0V4 0.002875 0.42142 None
11 2YLD CMO 0.01336 0.41567 None
12 3H86 AP5 0.001944 0.41161 None
13 4K30 NLG 0.01113 0.40904 None
14 4IAE 1DX 0.004135 0.40573 None
15 2HMT NAI 0.003748 0.40345 None
16 1T26 GBD 0.01874 0.40193 None
17 1T26 NAI 0.01874 0.40193 None
18 4DN8 BMA 0.001472 0.45963 2.22222
19 1MVN FMN 0.0005139 0.42261 2.22222
20 3TA2 ATP 0.0003494 0.42217 2.22222
21 3VCA PRO 0.0064 0.42196 2.22222
22 2A0W DIH 0.0003778 0.4211 2.22222
23 3EJ0 11X 0.006945 0.42042 2.22222
24 3TA2 AKG 0.0002961 0.41772 2.22222
25 3K9W ADE 0.01665 0.40428 2.22222
26 3K9W 4PS 0.01665 0.40428 2.22222
27 1MZV AMP 0.001404 0.43637 3.33333
28 4MOB ADP 0.0009297 0.42623 3.33333
29 1SQ5 PAU 0.01071 0.40975 3.33333
30 3S9K CIT 0.03578 0.40679 3.33333
31 4TMK T5A 0.0193 0.40675 3.33333
32 4KCT PYR 0.0004297 0.46312 4.44444
33 1YBH FAD 0.002745 0.42966 4.44444
34 3GM5 CIT 0.0183 0.40937 4.44444
35 1LTH NAD 0.004237 0.40498 4.44444
36 4B9E FAH 0.02961 0.40478 4.44444
37 1Y7P RIP 0.0001348 0.5261 5.55556
38 1RP0 AHZ 0.0002537 0.45794 5.55556
39 3NOJ PYR 0.003887 0.43141 5.55556
40 4M5P MLA 0.02278 0.42957 5.55556
41 1I2B USQ 0.00609 0.42919 5.55556
42 1I2B UPG 0.00609 0.42919 5.55556
43 1I2B NAD 0.00609 0.42919 5.55556
44 3VHZ L2P GLC MAN SGA 0.003184 0.41825 5.55556
45 3FPZ AHZ 0.01167 0.40372 5.55556
46 2ZO9 MLI 0.0006111 0.44809 6.66667
47 2Q1A 2KT 0.004404 0.43782 6.66667
48 4WVH ASP HIS ASP ALA HIS ALA 0.003371 0.42601 6.66667
49 3HZS M0E 0.002435 0.404 6.66667
50 3VOZ 04A 0.003576 0.40299 6.66667
51 3F81 STT 0.00306 0.46741 7.77778
52 4F8L GAL 0.01033 0.45712 7.77778
53 1YOA FMN 0.01299 0.45151 7.77778
54 3R51 MMA 0.01094 0.43892 7.77778
55 1BTN I3P 0.02423 0.43848 7.77778
56 3MB5 SAM 0.004466 0.40258 7.77778
57 1J2Z SOG 0.0004688 0.43705 8.88889
58 3K3G MMU 0.002914 0.43686 8.88889
59 1GU3 BGC BGC BGC BGC BGC 0.005297 0.42289 8.88889
60 4LHM AZZ 0.0111 0.41404 8.88889
61 1V5F TPP 0.02425 0.4113 8.88889
62 1V5F FAD 0.02425 0.4113 8.88889
63 3NGU ADP 0.006818 0.40038 8.88889
64 1SS4 CIT 0.007003 0.49941 10
65 1SS4 GSH 0.002274 0.49884 10
66 3E5P PPI 0.04313 0.43484 10
67 1O9U ADZ 0.0166 0.42955 10
68 3FS8 ACO 0.004568 0.41726 11.1111
69 1A8S PPI 0.005495 0.41026 11.1111
70 3FS8 TDR 0.007255 0.40836 11.1111
71 4OYA 1VE 0.007327 0.41883 12.2222
72 2ZJ5 ADP 0.01115 0.41395 12.2222
73 1WDA BAG 0.007569 0.41141 12.2222
74 4RJK PYR 0.0361 0.40603 12.2222
75 5DRN 5CT 0.03047 0.41918 13.3333
76 2NS1 ADP 0.000531 0.41644 13.3333
77 2V5E SCR 0.01565 0.43841 14.4444
78 4JCA CIT 0.03416 0.42 15.5556
79 2RCN GDP 0.0106 0.40098 15.5556
80 2ZWS PLM 0.007675 0.46441 16.6667
81 4NAO AKG 0.01922 0.41379 16.6667
82 3RF4 FUN 0.01372 0.40513 16.6667
83 4M51 BEZ 0.02913 0.4107 17.7778
84 1H16 DTL 0.02734 0.41831 18.8889
85 2XD9 XD9 0.01218 0.4211 20
86 1XX4 BAM 0.009696 0.41409 21.1111
87 4AAW R84 0.003555 0.40422 21.1111
88 2HVK TBA 0.005253 0.43431 23.3333
89 1LDM NAD 0.003157 0.41672 25.5556
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