Receptor
PDB id Resolution Class Description Source Keywords
2BYC 1.9 Å NON-ENZYME: OTHER BLRB - A BLUF PROTEIN, DARK STATE STRUCTURE RHODOBACTER SPHAEROIDES SIGNALING PROTEIN PHOTORECEPTOR FLAVIN
Ref.: STRUCTURE OF A BACTERIAL BLUF PHOTORECEPTOR: INSIGH BLUE LIGHT-MEDIATED SIGNAL TRANSDUCTION. PROC.NATL.ACAD.SCI.USA V. 102 12350 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMN A:1137;
B:1632;
Valid;
Valid;
none;
none;
submit data
456.344 C17 H21 N4 O9 P Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BYC 1.9 Å NON-ENZYME: OTHER BLRB - A BLUF PROTEIN, DARK STATE STRUCTURE RHODOBACTER SPHAEROIDES SIGNALING PROTEIN PHOTORECEPTOR FLAVIN
Ref.: STRUCTURE OF A BACTERIAL BLUF PHOTORECEPTOR: INSIGH BLUE LIGHT-MEDIATED SIGNAL TRANSDUCTION. PROC.NATL.ACAD.SCI.USA V. 102 12350 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FMN; Similar ligands found: 15
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 RS3 0.571429 0.831169
4 FAD 0.543307 0.876543
5 FAS 0.543307 0.876543
6 FAE 0.539062 0.865854
7 LFN 0.475 0.643836
8 C3F 0.473684 0.74359
9 CF4 0.463918 0.734177
10 FAY 0.446043 0.864198
11 FNR 0.444444 0.909091
12 RFL 0.442857 0.845238
13 4LS 0.411215 0.875
14 1VY 0.406593 0.769231
15 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BYC; Ligand: FMN; Similar sites found with APoc: 6
This union binding pocket(no: 1) in the query (biounit: 2byc.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 2HFN FMN 30.6569
2 1X0P FAD 32.8467
3 4YUS FMN 35.0365
4 5MBC FMN 37.2263
5 1YRX FMN 45.4545
6 2IYG FMN 45.9677
Pocket No.: 2; Query (leader) PDB : 2BYC; Ligand: FMN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2byc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback