Receptor
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CLA A:1327;
A:1328;
Part of Protein;
Part of Protein;
none;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
DGD A:1332;
A:1336;
Valid;
Valid;
none;
none;
submit data
949.299 C51 H96 O15 CCCCC...
MG A:1337;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
PID A:1329;
A:1330;
A:1331;
A:1333;
A:1334;
A:1335;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DGD; Similar ligands found: 72
No: Ligand ECFP6 Tc MDL keys Tc
1 DGD 1 1
2 1O2 0.776471 0.934783
3 3TF 0.767442 0.934783
4 1L2 0.709677 0.934783
5 SQD 0.678161 0.68254
6 GGD 0.64 0.978261
7 J7Z 0.62 0.934783
8 PII 0.494624 0.722222
9 TGL 0.493506 0.608696
10 LTC 0.475 0.762712
11 PIF 0.46875 0.709091
12 PGT 0.467391 0.618182
13 LHG 0.467391 0.618182
14 PIZ 0.464646 0.690909
15 GM3 0.464646 0.763636
16 PBS 0.455446 0.75
17 FEE 0.455446 0.75
18 F61 0.455446 0.75
19 AGH 0.455446 0.75
20 0SH 0.455446 0.75
21 PIO 0.454545 0.709091
22 52N 0.454545 0.709091
23 IP9 0.454545 0.690909
24 FAW 0.451219 0.688889
25 DGA 0.451219 0.688889
26 L2C 0.451219 0.688889
27 DDR 0.451219 0.688889
28 B7N 0.45098 0.709091
29 LBR 0.448276 0.638298
30 PIE 0.446602 0.690909
31 MAN MMA 0.439024 0.73913
32 9R2 0.436782 0.866667
33 20S 0.435644 0.875
34 BMA MAN MAN 0.433735 0.733333
35 GLC GLC GLC 0.433735 0.733333
36 GLC GLC GLC GLC GLC BGC 0.433735 0.733333
37 GLC GLC GLC GLC BGC 0.433735 0.733333
38 MAN MAN MAN 0.433735 0.733333
39 D3D 0.425743 0.607143
40 PGW 0.425743 0.607143
41 DR4 0.422222 0.847826
42 XNS 0.422222 0.847826
43 DR9 0.421569 0.607143
44 PGV 0.421569 0.607143
45 03F 0.420561 0.736842
46 DGG 0.419048 0.642857
47 JLS 0.418182 0.736842
48 P6L 0.417476 0.607143
49 BOG 0.416667 0.888889
50 HSJ 0.416667 0.888889
51 BNG 0.416667 0.888889
52 OZ2 0.413462 0.607143
53 AGA 0.412371 0.618182
54 GLA GLC 0.409639 0.733333
55 MAN BMA 0.409639 0.733333
56 BMA MAN 0.409639 0.733333
57 MAN MAN 0.409639 0.733333
58 GAL GLC 0.409639 0.733333
59 GLC GLC 0.409639 0.733333
60 MLB 0.409639 0.733333
61 GLA BGC 0.409639 0.733333
62 GAL GAL 0.409639 0.733333
63 BMA GLA 0.409639 0.733333
64 LAK 0.409639 0.733333
65 GLA BMA 0.409639 0.733333
66 BGC GLA 0.409639 0.733333
67 BGC GLC 0.409639 0.733333
68 GLC BGC 0.409639 0.733333
69 T7X 0.409091 0.709091
70 B7G 0.404762 0.888889
71 KGM 0.404762 0.888889
72 GAL SPH NER 0.40367 0.719298
Ligand no: 2; Ligand: PID; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 NEX 0.438017 0.818182
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2c9e.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2c9e.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2c9e.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2c9e.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2c9e.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback