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Receptor
PDB id Resolution Class Description Source Keywords
2DBZ 2.45 Å EC: 1.1.1.26 CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYRO HORIKOSHII OT3, COMPLEXED WITH NADP (P61) PYROCOCCUS HORIKOSHII GLYOXYLATE REDUCTASE D-3-PHOSPHOGLYCERATE DEHYDROGENASE STGENOMICS NPPSFA NATIONAL PROJECT ON PROTEIN STRUCTURAL ANFUNCTIONAL ANALYSES RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE RSGI OXIDOREDUCTASE
Ref.: STRUCTURE OF ARCHAEAL GLYOXYLATE REDUCTASE FROM PYR HORIKOSHII OT3 COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE. ACTA CRYSTALLOGR.,SECT.D V. 63 357 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAP A:401;
B:402;
Valid;
Valid;
none;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
SO4 A:502;
A:504;
B:501;
B:503;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DBZ 2.45 Å EC: 1.1.1.26 CRYSTAL STRUCTURE OF GLYOXYLATE REDUCTASE (PH0597) FROM PYRO HORIKOSHII OT3, COMPLEXED WITH NADP (P61) PYROCOCCUS HORIKOSHII GLYOXYLATE REDUCTASE D-3-PHOSPHOGLYCERATE DEHYDROGENASE STGENOMICS NPPSFA NATIONAL PROJECT ON PROTEIN STRUCTURAL ANFUNCTIONAL ANALYSES RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE RSGI OXIDOREDUCTASE
Ref.: STRUCTURE OF ARCHAEAL GLYOXYLATE REDUCTASE FROM PYR HORIKOSHII OT3 COMPLEXED WITH NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE. ACTA CRYSTALLOGR.,SECT.D V. 63 357 2007
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2DBQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 6BII Ki = 2000 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 2DBQ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 5AOV - GLV C2 H2 O3 C(=O)C(=O)....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4NU5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 4E5P - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 4EBF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 3BAZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 6BII Ki = 2000 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 2GCG - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
7 2DBZ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NHD 0.68254 0.958904
10 NJP 0.661417 0.972973
11 NFD 0.658915 0.934211
12 NXX 0.619048 0.959459
13 DND 0.619048 0.959459
14 AMP NAD 0.606061 0.958904
15 ZID 0.605839 0.972603
16 NAQ 0.59854 0.922078
17 ATR 0.59292 0.917808
18 NAE 0.591241 0.946667
19 NDE 0.58042 0.986301
20 A22 0.571429 0.958904
21 NAJ 0.567164 0.986111
22 A2R 0.563025 0.932432
23 NDC 0.561644 0.922078
24 NA7 0.552846 0.907895
25 ODP 0.551471 0.935065
26 A2P 0.539823 0.930556
27 8ID 0.537313 0.910256
28 NPW 0.525547 0.8875
29 NZQ 0.521739 0.910256
30 CNA 0.521739 0.959459
31 NDP 0.514493 0.922078
32 PO4 PO4 A A A A PO4 0.503937 0.930556
33 1DG 0.503401 0.922078
34 DG1 0.503401 0.922078
35 TXP 0.5 0.922078
36 NMN AMP PO4 0.492958 0.921053
37 XNP 0.492958 0.875
38 25L 0.492308 0.958904
39 25A 0.492063 0.972222
40 NMN 0.486726 0.888889
41 NGD 0.485714 0.935065
42 9JJ 0.481707 0.8875
43 2AM 0.477876 0.891892
44 ADP 0.458333 0.945205
45 PAP 0.451613 0.931507
46 A2D 0.445378 0.945205
47 AN2 0.442623 0.932432
48 7L1 0.441558 0.777778
49 ADP PO3 0.44 0.944444
50 SAP 0.44 0.896104
51 AGS 0.44 0.896104
52 M33 0.439024 0.906667
53 AR6 AR6 0.438849 0.945205
54 BA3 0.438017 0.945205
55 OAD 0.43609 0.92
56 ADP BMA 0.43609 0.92
57 DQV 0.435714 0.958904
58 HEJ 0.435484 0.945205
59 ATP 0.435484 0.945205
60 OOB 0.435115 0.958904
61 B4P 0.434426 0.945205
62 AP5 0.434426 0.945205
63 GAP 0.433071 0.92
64 0WD 0.432432 0.922078
65 2A5 0.432 0.87013
66 5FA 0.432 0.945205
67 AQP 0.432 0.945205
68 AT4 0.430894 0.907895
69 00A 0.428571 0.909091
70 DAL AMP 0.427481 0.932432
71 CA0 0.427419 0.92
72 ADP ALF 0.426357 0.871795
73 ALF ADP 0.426357 0.871795
74 9X8 0.425373 0.871795
75 ACP 0.424 0.92
76 NAJ PZO 0.423841 0.897436
77 9SN 0.423358 0.897436
78 ADP VO4 0.423077 0.932432
79 VO4 ADP 0.423077 0.932432
80 WAQ 0.422222 0.884615
81 V3L 0.421875 0.945205
82 ACQ 0.421875 0.92
83 ADQ 0.421053 0.92
84 AR6 0.420635 0.918919
85 APR 0.420635 0.918919
86 ATP A A A 0.42029 0.958333
87 CO7 0.419753 0.786517
88 3OD 0.419118 0.92
89 1ZZ 0.419118 0.841463
90 DLL 0.41791 0.958904
91 AD9 0.417323 0.92
92 NAX 0.416667 0.875
93 OVE 0.416667 0.857143
94 MYR AMP 0.416058 0.841463
95 AV2 0.415385 0.868421
96 A3P 0.414634 0.944444
97 NNR 0.414414 0.72973
98 OMR 0.413793 0.831325
99 6YZ 0.412214 0.92
100 ANP 0.410853 0.92
101 A1R 0.410448 0.860759
102 ABM 0.409836 0.893333
103 A 0.408333 0.944444
104 AMP 0.408333 0.944444
105 SON 0.408 0.933333
106 PPS 0.407692 0.829268
107 5AL 0.407692 0.932432
108 NAI 0.406897 0.909091
109 7D3 0.406504 0.857143
110 ADX 0.404762 0.829268
111 ATF 0.40458 0.907895
112 3UK 0.404412 0.945946
113 TYR AMP 0.404255 0.921053
114 AMP DBH 0.404255 0.894737
115 139 0.402685 0.875
116 50T 0.401575 0.906667
117 SRP 0.401515 0.907895
118 A A 0.40146 0.972222
119 B5V 0.40146 0.933333
120 A3R 0.4 0.860759
121 3AM 0.4 0.90411
122 B5M 0.4 0.921053
123 FA5 0.4 0.933333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DBZ; Ligand: NAP; Similar sites found with APoc: 966
This union binding pocket(no: 1) in the query (biounit: 2dbz.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC NBU None
2 2BOS GLA GAL GLC None
3 1OC2 TDX 0.898204
4 1OC2 NAD 0.898204
5 5OOH 9ZZ 0.970874
6 5OOH NAP 0.970874
7 3R7F CP 0.986842
8 1ORR NAD 1.1976
9 4RSL FAD 1.1976
10 5YAP 8S0 1.1976
11 6GAR FAD 1.1976
12 5YAP NAI 1.1976
13 2DM6 IMN 1.2012
14 2DM6 NAP 1.2012
15 1FWV SGA MAG FUC 1.49254
16 4MP8 MLI 1.49701
17 4MP8 NAD 1.49701
18 1VKO NAD 1.49701
19 2J5V PCA 1.49701
20 1GY8 NAD 1.49701
21 5TWB FAD 1.49701
22 5N0J FAD 1.49701
23 2AQJ FAD 1.49701
24 2AQJ TRP 1.49701
25 3K7M FAD 1.49701
26 4A0S NAP 1.49701
27 5WXU FLC 1.49701
28 1PN0 FAD 1.49701
29 1PN0 IPH 1.49701
30 6F97 FAD 1.49701
31 2FN1 SAL 1.49701
32 3X0V FAD 1.49701
33 3DAG FEG 1.49701
34 2PZM NAD 1.51515
35 2PZM UDP 1.51515
36 5OJI ISN 1.53846
37 5OJI NAP 1.53846
38 4MOP 2H5 1.57978
39 3H8V ATP 1.71233
40 3WQQ NDP 1.79641
41 3WQQ IB3 1.79641
42 4KP7 NAP 1.79641
43 1YB5 NAP 1.79641
44 4KP7 1UQ 1.79641
45 4J36 1HR 1.79641
46 6FHO FAD 1.79641
47 4J36 FAD 1.79641
48 3TTN SPD 1.79641
49 2RGJ FAD 1.79641
50 3SQP FAD 1.79641
51 1A99 PUT 1.79641
52 2VVM FAD 1.79641
53 2VVL FAD 1.79641
54 4NBT NAD 1.79641
55 2J8Z NAP 1.79641
56 5Z75 NAD 1.83486
57 2Q7V FAD 1.84615
58 4CJX NAP 1.88088
59 5O98 NAP 1.89274
60 1I36 NAP 1.89394
61 4ZRN NAD 1.92308
62 4ZRN UPG 1.92308
63 2Q0L NAP 1.92926
64 2Q0L FAD 1.92926
65 1LC3 NAD 2.04082
66 1GZ4 ATP 2.09581
67 4OOE FOM 2.09581
68 4OOE NDP 2.09581
69 3ULK NDP 2.09581
70 1KEW NAD 2.09581
71 4G5H NAP 2.09581
72 4G5H UD7 2.09581
73 1UDB UFG 2.09581
74 1UDB NAD 2.09581
75 1Z45 NAD 2.09581
76 5JWC FAD 2.09581
77 5DF1 NAP 2.09581
78 5DF1 58X 2.09581
79 1KEW TYD 2.09581
80 1P31 EPU 2.09581
81 4PIV NDP 2.09581
82 6EL3 NAP 2.09581
83 5GUD NDP 2.09581
84 2R4J FAD 2.09581
85 2R4J 13P 2.09581
86 3E1T FAD 2.09581
87 4R1S NAP 2.09581
88 3RC1 NAP 2.09581
89 5I39 FAD 2.09581
90 3RC1 TLO 2.09581
91 1KC7 PPR 2.09581
92 5GUD 2IT 2.09581
93 5FJN BE2 2.09581
94 5FJN FAD 2.09581
95 1FL2 FAD 2.09581
96 5EZ7 FAD 2.09581
97 5K0A FAD 2.12121
98 3HB5 NAP 2.14067
99 5MIT FAD 2.14067
100 5MIT NAP 2.14067
101 1XKQ NDP 2.14286
102 3WXB NDP 2.15054
103 3QWI CUE 2.22222
104 3QWI NAP 2.22222
105 4ITU 1HS 2.23048
106 4ITU NAI 2.23048
107 5D4V SAH 2.23881
108 3VPH NAD 2.25806
109 3VPH OXM 2.25806
110 2WSB NAD 2.3622
111 5DOZ NDP 2.36686
112 4YCA NDP 2.38095
113 1LDN NAD 2.39521
114 3B1J NAD 2.39521
115 2D2I NAP 2.39521
116 1E5Q NDP 2.39521
117 3B20 NAD 2.39521
118 5A1T NAI 2.39521
119 1X87 NAD 2.39521
120 5A1T OXM 2.39521
121 3OA2 NAD 2.39521
122 3Q3C NAD 2.39521
123 1BXK NAD 2.39521
124 5J5Z FAD 2.39521
125 4U7W NDP 2.39521
126 1FEC FAD 2.39521
127 1EK6 NAI 2.39521
128 5HSA FAS 2.39521
129 5NMX NAP 2.39521
130 1EK6 UPG 2.39521
131 3AYI HCI 2.39521
132 3AYI FAD 2.39521
133 2QA1 FAD 2.39521
134 5OC1 FAD 2.39521
135 5NMX FAD 2.39521
136 1H9A NAP 2.39521
137 2IID FAD 2.39521
138 2IID PHE 2.39521
139 6B74 BEN 2.39521
140 2A8X FAD 2.39521
141 3NYC IAR 2.39521
142 3NYC FAD 2.39521
143 1RPN NDP 2.39521
144 1PZG A3D 2.41692
145 6GAS FAD 2.41692
146 1NVT NAP 2.43902
147 2QZZ NAP 2.51572
148 6HKE LMR 2.51572
149 2QZZ EMF 2.51572
150 6HKE MLT 2.51572
151 1KYQ NAD 2.55474
152 1WOQ BGC 2.62172
153 2GDZ NAD 2.62172
154 1IY8 NAD 2.62172
155 5Z2F NAP 2.64151
156 5JE8 NAD 2.69461
157 1B8U NAD 2.69461
158 1RM0 D6P 2.69461
159 1CDO NAD 2.69461
160 1RM0 NAI 2.69461
161 3T31 DCQ 2.69461
162 3T31 FAD 2.69461
163 4MDH NAD 2.69461
164 5U8U FAD 2.69461
165 1N9G NAP 2.69461
166 1BZL GCG 2.69461
167 1BZL FAD 2.69461
168 1YY5 FAD 2.69461
169 1B8U OAA 2.69461
170 5MLR NAP 2.69461
171 5MLR GRQ 2.69461
172 2GMH FAD 2.69461
173 5MBX FAD 2.69461
174 5MBX SP5 2.69461
175 1REO FAD 2.69461
176 2E5V FAD 2.69461
177 5TS5 FAD 2.69461
178 1RSG FAD 2.69461
179 4Y1B NAP 2.69461
180 4YKG NAD 2.69461
181 4WAS NAP 2.69461
182 5VLQ ANP 2.69461
183 4YKG FAD 2.69461
184 5YLF BGC 2.69461
185 5TCI MLI 2.69461
186 6AIN FAD 2.69461
187 4WAS COO 2.69461
188 2EWM NAD 2.69461
189 2YVJ NAI 2.69608
190 2YVF NAD 2.69608
191 2YVF FAD 2.69608
192 2YVJ FAD 2.69608
193 5MDH NAD 2.7027
194 3LZW NAP 2.71084
195 3LZW FAD 2.71084
196 2CVQ NDP 2.75229
197 3FPZ AHZ 2.76074
198 1ZK4 NAP 2.78884
199 2QRK AMP 2.79188
200 5A96 GTP 2.81124
201 1G0N NDP 2.82686
202 1G0N PHH 2.82686
203 4IF4 BEF 2.88462
204 1MXH DHF 2.89855
205 1MXH NAP 2.89855
206 3NGL NAP 2.89855
207 4O0L NDP 2.90909
208 1UXG FUM 2.91262
209 1UXG NAD 2.91262
210 3VYW SAM 2.92208
211 1RM4 NDP 2.96736
212 4B4U NAP 2.9703
213 1EBF NAD 2.99401
214 5O9F NAD 2.99401
215 5O9F 9ON 2.99401
216 1O6Z NAD 2.99401
217 3A06 NDP 2.99401
218 5UR0 NAD 2.99401
219 1X14 NAD 2.99401
220 3A06 FOM 2.99401
221 1NVM NAD 2.99401
222 3L4S NAD 2.99401
223 2IXB NAD 2.99401
224 3L4S 3PG 2.99401
225 2BD0 NAP 2.99401
226 2XVE FAD 2.99401
227 5GZ6 NDP 2.99401
228 5GZ6 7C3 2.99401
229 1RKX NAD 2.99401
230 3WGT FAD 2.99401
231 3WGT QSC 2.99401
232 1YS4 NAP 2.99401
233 4J1Q NDP 2.99401
234 6F7L FAD 2.99401
235 5EOW FAD 2.99401
236 3QJ4 FAD 2.99401
237 1K3T BRZ 2.99401
238 5TTJ FAD 2.99401
239 1Q19 SSC 2.99401
240 4YT4 FE9 2.99401
241 2IXB A2G 2.99401
242 3DTU DXC 2.99401
243 2YG3 FAD 2.99401
244 2RGH FAD 2.99401
245 1VJT NAD 2.99401
246 5T2U NAP 2.99401
247 4X9M FAD 2.99401
248 3WMX NAD 2.99401
249 1E1M NAP 2.99401
250 1E1M FAD 2.99401
251 1KOL NAD 3.01508
252 1QH9 LAC 3.01724
253 5Y8L NAD 3.05085
254 5Y8L HUI 3.05085
255 1LK7 DER 3.05677
256 3AFN NAP 3.10078
257 5JCM FAD 3.10421
258 5JCM ISD 3.10421
259 5JCM NAD 3.10421
260 1T26 NAI 3.10559
261 1T26 GBD 3.10559
262 2A92 NAI 3.11526
263 5YSS NAD 3.125
264 1ZQ9 SAM 3.15789
265 4UP3 NDP 3.18471
266 2JAH NDP 3.23887
267 2JAP NDP 3.23887
268 5AX9 4KT 3.24675
269 5O4J SAH 3.28467
270 5O4J PJL 3.28467
271 5O4J 9KH 3.28467
272 2NU8 COA 3.29341
273 2I3G NAP 3.29341
274 1RYD NDP 3.29341
275 3WLE NAD 3.29341
276 3CIF NAD 3.29341
277 2B5W NAP 3.29341
278 2Q1S NAI 3.29341
279 5A04 BGC 3.29341
280 5YU3 PRO 3.29341
281 5YU3 NAD 3.29341
282 2NPX NAD 3.29341
283 1O0S NAI 3.29341
284 5GSN NAP 3.29341
285 5GSN FAD 3.29341
286 1YKJ FAD 3.29341
287 1YKJ PHB 3.29341
288 4QS9 BGC 3.29341
289 5GSN MMZ 3.29341
290 5A04 NDP 3.29341
291 3CIF G3H 3.29341
292 3NKS FAD 3.29341
293 4ZCC FAD 3.29341
294 4ZCC NAI 3.29341
295 1H82 GZZ 3.29341
296 3AB1 FAD 3.29341
297 1H82 FAD 3.29341
298 1DJN ADP 3.29341
299 5BUK FAD 3.29341
300 4JDR FAD 3.29341
301 5KVS NAP 3.29341
302 6F9Q NAD 3.29341
303 1Q9I TEO 3.29341
304 1Q9I FAD 3.29341
305 1GET NAP 3.29341
306 1GET FAD 3.29341
307 5T9E NAP 3.32103
308 1EJ0 SAM 3.33333
309 1V59 NAD 3.34728
310 1V59 FAD 3.34728
311 1VL0 NAI 3.42466
312 1E3I CXF 3.45745
313 3A4V NAD 3.47003
314 3A4V PYR 3.47003
315 2HMT NAI 3.47222
316 2YY7 NAD 3.52564
317 3RJ5 NAD 3.54331
318 1GUZ NAD 3.54839
319 1GV0 NAD 3.54839
320 3GFB NAD 3.59281
321 2DT5 NAD 3.59281
322 5OCM NAP 3.59281
323 3CMC NAD 3.59281
324 6F3N ADN 3.59281
325 6F3N NAD 3.59281
326 1WPQ NAD 3.59281
327 1I2B USQ 3.59281
328 1I2B NAD 3.59281
329 1I2B UPG 3.59281
330 6F3M NAD 3.59281
331 4HXY NDP 3.59281
332 4B7X NAP 3.59281
333 4EMI NAD 3.59281
334 1D4D FAD 3.59281
335 5BRT FAD 3.59281
336 5BRT CH9 3.59281
337 2B9W FAD 3.59281
338 4JJF N2I 3.59281
339 4EMI FAD 3.59281
340 4EMJ FAD 3.59281
341 4JJF FE9 3.59281
342 4TXI FAD 3.59281
343 5NUF NAD 3.61446
344 5NUE NAD 3.61446
345 1YJQ NAP 3.63036
346 5I7A 68Q 3.68098
347 1U7T TDT 3.83142
348 2XOC ADE 3.83142
349 1E3W NAD 3.83142
350 5X20 NAD 3.84615
351 1E6W NAD 3.84615
352 4E13 NAD 3.88693
353 4PLG OXM 3.89222
354 4PLG NAI 3.89222
355 3K5I AIR 3.89222
356 4DPL NAP 3.89222
357 3OJO NAD 3.89222
358 2B4R NAD 3.89222
359 2B4R AES 3.89222
360 4Z0H NAD 3.89222
361 6A3J SOE 3.89222
362 2XVF FAD 3.89222
363 1PJS NAD 3.89222
364 6A3J NAI 3.89222
365 2GVC FAD 3.89222
366 2GV8 FAD 3.89222
367 1VQW FAD 3.89222
368 4M52 FAD 3.89222
369 5J7X FAD 3.89222
370 1YQZ FAD 3.89222
371 2ZAT NAP 3.89222
372 1NJJ GET 3.89222
373 4M52 M52 3.89222
374 4PVD NDP 3.89222
375 4D42 W0I 3.90071
376 4D42 NAP 3.90071
377 1E6E FAD 3.90625
378 5BVA FAD 3.91198
379 5X9D 80F 3.94737
380 1R37 NAD 4.03458
381 5THQ NDP 4.04412
382 3B6O TMP 4.04858
383 3NUG NAD 4.04858
384 1O8B ABF 4.10959
385 3V1U NAD 4.11255
386 5OJL TXP 4.19162
387 1DLJ UGA 4.19162
388 1DLJ NAI 4.19162
389 2FR1 NDP 4.19162
390 5BJX NAD 4.19162
391 5BJX UDP 4.19162
392 5Y77 FAD 4.19162
393 5MZI FAD 4.19162
394 5MZI FYK 4.19162
395 3UCL NAP 4.19162
396 3UCL CYH 4.19162
397 3UCL FAD 4.19162
398 5WQP NAP 4.19162
399 4JNA FAD 4.19162
400 2ZB3 NDP 4.19162
401 5XWV 8H6 4.19162
402 5XWV NDP 4.19162
403 4PPF FLC 4.19162
404 3ZNN 4WL 4.19162
405 3ZNN FAD 4.19162
406 5WQP NCA 4.19162
407 1D7O TCL 4.19162
408 1D7O NAD 4.19162
409 4K5S FAD 4.19162
410 1EQ2 NAP 4.19162
411 4K5S PM0 4.19162
412 2X6T NAP 4.19162
413 3GD4 FAD 4.19162
414 3GD4 NAD 4.19162
415 2HQM FAD 4.19162
416 1ZK7 FAD 4.19162
417 3GMB FAD 4.19162
418 5AYV KPL 4.20712
419 5AYV NAP 4.20712
420 1J0X NAD 4.21687
421 4IN9 SER TRP PHE PRO 4.21687
422 2VYN NAD 4.22961
423 6C4N NAP 4.23163
424 1GAD NAD 4.24242
425 5LQ8 GB 4.25532
426 3OID NDP 4.26357
427 1SOW NAD 4.26829
428 5O42 BGC 4.37956
429 5O42 NAD 4.37956
430 5O42 9JW 4.37956
431 5TUF TDC 4.40098
432 5TUF FAD 4.40098
433 1XSE NDP 4.40678
434 3V1Y NAD 4.45104
435 4GKV NAD 4.46429
436 2FZW NAD 4.49102
437 1MUU NAD 4.49102
438 1MV8 NAD 4.49102
439 4R5M NAP 4.49102
440 3L9W AMP 4.49102
441 6ER9 FAD 4.49102
442 6ER9 NAP 4.49102
443 3L9W GSH 4.49102
444 4R5M 4NO 4.49102
445 1SZ2 BGC 4.49102
446 3S5W NAP 4.49102
447 5UAO FAD 4.49102
448 2ZB4 NAP 4.49102
449 1N1G BCP 4.49102
450 2ZB4 5OP 4.49102
451 4Z24 FAD 4.49102
452 4QED NAP 4.49102
453 3S5W FAD 4.49102
454 4PLT NAI 4.53172
455 4PLT OXM 4.53172
456 3H5N ATP 4.53258
457 5ZI9 FLC 4.61538
458 5UAV NDP 4.65839
459 5UAV TFB 4.65839
460 3SJU NDP 4.6595
461 2Q46 NAP 4.74308
462 3KU0 ADE 4.78088
463 1H2B NAJ 4.79042
464 4BVA NDP 4.79042
465 4D79 ATP 4.79042
466 4RDH AMP 4.79042
467 5CAE SIN 4.79042
468 5CAE COA 4.79042
469 4RDI ATP 4.79042
470 3ORF NAD 4.79042
471 6C4M NAP 4.79042
472 1E7S NAP 4.79042
473 4BVA T3 4.79042
474 2NVK NAP 4.79042
475 1XHC FAD 4.79042
476 1M2W NAD 4.79042
477 4GLL NAD 4.79042
478 5NA1 FAD 4.79042
479 2DKN NAI 4.79042
480 4MIG G3F 4.79042
481 2Z3Y F2N 4.79042
482 4BJZ FAD 4.79042
483 4BJZ P3A 4.79042
484 4KWI 1TJ 4.79042
485 4EIP FAD 4.79042
486 4EDF UPG 4.79042
487 4OJP MAL 4.79042
488 4KWI NAP 4.79042
489 2NVK FAD 4.79042
490 1LJ8 NAD 4.79042
491 4CNK FAD 4.79042
492 4USQ FAD 4.79042
493 6BJO DUY 4.8
494 2F5X ASP 4.80769
495 1V6A TRE 4.81928
496 1O5I NAD 4.81928
497 3RFV NAI 4.86891
498 3RFV 15L 4.86891
499 1HDR NAD 4.91803
500 4OSP NAP 4.94297
501 2RH4 EMO 5.05415
502 1ZH8 NAP 5.08982
503 2Y6Q I7T 5.08982
504 1RYI GOA 5.08982
505 3UOY FAD 5.08982
506 3UOY NAP 5.08982
507 4EA7 JB2 5.08982
508 4EA7 COA 5.08982
509 2Y6Q FAD 5.08982
510 4D04 FAD 5.08982
511 4D04 NAP 5.08982
512 1PS9 NAP 5.08982
513 1RYI FAD 5.08982
514 5ZYN FAD 5.08982
515 1PS9 FAD 5.08982
516 1P0F NAP 5.09383
517 1DSS NAD 5.1051
518 1HYE NAP 5.11182
519 6A0S HSE 5.12048
520 6A0S NDP 5.12048
521 4NBU NAI 5.2
522 4Y9D NAI 5.2459
523 5NM7 GLY 5.26316
524 1GZ6 NAI 5.32915
525 4XB2 NDP 5.37313
526 4XB2 HSE 5.37313
527 1LLU NAD 5.38922
528 2YYY NAP 5.38922
529 3ITJ CIT 5.38922
530 6DNT NAD 5.38922
531 1Y8Q ATP 5.38922
532 3ETG GTP 5.38922
533 3ETG GLU 5.38922
534 3EF0 ALF 5.38922
535 3ETG NDP 5.38922
536 4AP3 NAP 5.38922
537 4AP3 FAD 5.38922
538 2VZ0 NAP 5.38922
539 2VZ0 D64 5.38922
540 5JDC NAP 5.38922
541 2WD7 NAP 5.38922
542 4UZI IMD 5.38922
543 2IVD FAD 5.38922
544 5K6A NAP 5.38922
545 5MQ6 NDP 5.38922
546 3LXD FAD 5.38922
547 3JQ7 NAP 5.38922
548 2BGM NAJ 5.39568
549 4FC7 NAP 5.41516
550 4FC7 COA 5.41516
551 1X7D ORN 5.42857
552 1X7D NAD 5.42857
553 3O9Z NAD 5.44872
554 3O9Z AKG 5.44872
555 4FN4 NAD 5.51181
556 5EIN NAP 5.55556
557 1OMO NAD 5.59006
558 2CUL FAD 5.60345
559 4XZ3 COA 5.65217
560 4XYM COA 5.65217
561 1J5P NAD 5.68862
562 2CDU ADP 5.68862
563 1F8G NAD 5.68862
564 1F8F NAD 5.68862
565 5U5N NAD 5.68862
566 1GQ2 NAP 5.68862
567 3THR C2F 5.68862
568 5L4S 6KX 5.68862
569 5L4S NAP 5.68862
570 2CDU FAD 5.68862
571 5JCA FAD 5.68862
572 5JCA NDP 5.68862
573 5B4T 3HR 5.68862
574 5B4T NAD 5.68862
575 2C7G FAD 5.68862
576 2V6G NAP 5.68862
577 3ICT ADP 5.68862
578 2C7G ODP 5.68862
579 3ICS ADP 5.68862
580 5L53 NAP 5.68862
581 4DCM SAM 5.68862
582 1UJ5 5RP 5.72687
583 4USI AKG 5.84416
584 3JYN NDP 5.84615
585 1DRV A3D 5.86081
586 5L4L NAP 5.92105
587 5G4L NDP 5.94406
588 1LTH NAD 5.95611
589 1XCL SAH 5.95745
590 2OOR NAD 5.98802
591 5T9F NAP 5.98802
592 5T9F TYR 5.98802
593 2GN4 NDP 5.98802
594 2GN4 UD1 5.98802
595 4KVL PLM 5.98802
596 1L7E NAI 5.98802
597 1QMG APX 5.98802
598 3ZV6 NAD 5.98802
599 3ZV6 4HB 5.98802
600 3ICC NAP 5.98802
601 2B4Q NAP 5.98802
602 4TM3 FAD 5.98802
603 5KOX FAD 5.98802
604 5KOX RFP 5.98802
605 1GTE FAD 5.98802
606 2Q2V NAD 5.98802
607 1JNR FAD 6
608 2GLX NDP 6.0241
609 4O1M NAD 6.03175
610 5EES NAP 6.07287
611 1NFQ NAI 6.15385
612 4JBI NDP 6.21622
613 5L95 AMP 6.25
614 6CEP OXM 6.28743
615 6CEP NAD 6.28743
616 1H6C NDP 6.28743
617 1Q0H NDP 6.28743
618 1Q0H FOM 6.28743
619 1H6C SIN 6.28743
620 1NPD NAD 6.28743
621 5VN0 FAD 6.28743
622 1VI2 NAD 6.28743
623 3TTM PUT 6.28743
624 5VN0 NAI 6.28743
625 5WGR FAD 6.28743
626 1BDB NAD 6.28743
627 1QO8 FAD 6.28743
628 5HXI FAD 6.28743
629 2AWN ADP 6.28743
630 5HXI 5HN 6.28743
631 4IV9 FAD 6.28743
632 2Q1W NAD 6.30631
633 3LU1 NAD 6.31868
634 9LDT NAD 6.3253
635 9LDB NAD 6.3253
636 6BWL NAD 6.40244
637 5Y1G NAD 6.40244
638 5Y1G AKB 6.40244
639 1NM5 NAD 6.40394
640 3WV8 ATP 6.42202
641 5LD5 NAD 6.42458
642 3RKR NAP 6.48855
643 1C3V NDP 6.53061
644 3WBF NAP 6.55738
645 3WBF API 6.55738
646 6CI9 NAP 6.56371
647 4ZVV GN0 6.58683
648 4ZVV NAD 6.58683
649 1UWK URO 6.58683
650 1UWK NAD 6.58683
651 3TN7 NJP 6.58683
652 5KMS NAD 6.58683
653 5KMS FAD 6.58683
654 2WET FAD 6.58683
655 4Q9N NAI 6.58683
656 6C4T NA7 6.58683
657 4CQM NAP 6.58683
658 2RAB NAD 6.58683
659 2RAB FAD 6.58683
660 1LDM NAD 6.68693
661 5LPG 71V 6.70732
662 5GWT SIN 6.83453
663 5GWT NAD 6.83453
664 1MO9 FAD 6.88337
665 1MO9 KPC 6.88337
666 1C1X NAD 6.88623
667 1BXG NAD 6.88623
668 1BW9 NAD 6.88623
669 1KEV NDP 6.88623
670 1GR0 NAD 6.88623
671 1UP7 NAD 6.88623
672 2C29 NAP 6.88623
673 3QFA FAD 6.89655
674 4J7U YTZ 6.94444
675 4J7U NAP 6.94444
676 1P1C SAH 7.03518
677 3AD8 NAD 7.07071
678 1Z6Z NAP 7.0922
679 4OM8 NAD 7.11974
680 1XG5 NAP 7.16846
681 2IZ1 ATR 7.18563
682 5U5G NAP 7.18563
683 3I6I NDP 7.18563
684 1C0I BE2 7.18563
685 1C0I FAD 7.18563
686 5JDI NAP 7.18563
687 5W3K 9TY 7.18563
688 5W3K NDP 7.18563
689 3BMO NAP 7.18563
690 4CM9 NAP 7.18563
691 4CM8 NAP 7.18563
692 4CMI NAP 7.18563
693 4CLR NAP 7.18563
694 5JCJ NAP 7.18563
695 3BMN NAP 7.18563
696 3FWN ATR 7.18563
697 3JQ9 NAP 7.18563
698 1OBB NAD 7.18563
699 3BMQ NAP 7.18563
700 3JQG NAP 7.18563
701 4CM4 NAP 7.18563
702 3JQF NAP 7.18563
703 3JQA NAP 7.18563
704 4CLO NAP 7.18563
705 3JQ8 NAP 7.18563
706 3CF6 SP1 7.18563
707 3JQB NAP 7.18563
708 4CME NAP 7.18563
709 3H9E NAD 7.22543
710 5OVL NAP 7.33333
711 5ODQ FAD 7.35786
712 1FK8 NAD 7.393
713 1U1I NAD 7.39796
714 3G5S FAD 7.44921
715 1D1T NAD 7.48503
716 1U8X NAD 7.48503
717 4B63 NAP 7.48503
718 4B63 ORN 7.48503
719 4B63 FAD 7.48503
720 1DIG NAP 7.48503
721 2BRY FAD 7.48503
722 2JB2 PHE 7.48503
723 2JB2 FAD 7.48503
724 1DIG L37 7.48503
725 1CER NAD 7.55287
726 2AG8 NAP 7.60456
727 2HJR APR 7.62195
728 1N5D NDP 7.63889
729 2JL1 NAP 7.66551
730 1LUA NAP 7.66551
731 3KO8 NAD 7.69231
732 1QPR PHT 7.74648
733 4TQG NDP 7.78443
734 5MSO NAP 7.78443
735 3CTY FAD 7.78443
736 5Z2L NDP 7.78443
737 5ZBC FAD 7.78443
738 2DKH FAD 7.78443
739 2DKH 3HB 7.78443
740 1GPM CIT 7.78443
741 1PR9 NAP 7.78689
742 1EDO NAP 7.78689
743 3D3W NAP 7.78689
744 1F06 2NP 7.8125
745 1F06 NDP 7.8125
746 5J60 FAD 7.8125
747 4J56 FAD 7.89474
748 4BV6 FAD 7.91075
749 1WMA AB3 7.97101
750 1WMA NDP 7.97101
751 1PL6 NAD 8.08383
752 5XVH NAP 8.08383
753 5FI3 NAP 8.08383
754 2HK9 NAP 8.08383
755 4L8V NAP 8.08383
756 4KOA NDP 8.08383
757 1PL6 572 8.08383
758 1LVL NAD 8.08383
759 2HK9 ATR 8.08383
760 3NB0 G6P 8.08383
761 3AXB FAD 8.08383
762 3AXB PRO 8.08383
763 5NII FAD 8.09062
764 1O94 ADP 8.125
765 1VL8 NAP 8.2397
766 4YAG NAI 8.3045
767 2DTX BMA 8.33333
768 3O26 NDP 8.36013
769 1KJ8 GAR 8.38323
770 3TWO NDP 8.38323
771 1WDK NAD 8.38323
772 3QVP FAD 8.38323
773 4OPC PGT 8.38323
774 4OPC FDA 8.38323
775 6FP4 E1T 8.38323
776 1JA9 NDP 8.39416
777 1RP0 AHZ 8.4507
778 1P77 ATR 8.45588
779 4RF2 NAP 8.45588
780 5OVK NDP 8.59375
781 1M0S CIT 8.6758
782 1TB4 PEJ 8.68263
783 2GAG NAD 8.68263
784 4YRY NAD 8.68263
785 4NTD FAD 8.68263
786 4YRY FAD 8.68263
787 3SJ7 NDP 8.73016
788 4IDC 1XX 8.73494
789 4IDC NDP 8.73494
790 4EUE NAI 8.85168
791 3O03 NAP 8.93471
792 5KKA 6V0 8.97436
793 1U3U NAD 8.98204
794 1U3U BNF 8.98204
795 4RQU NAD 8.98204
796 4KQW NAP 8.98204
797 5KQA GSH 9.09091
798 5CG1 NAD BBN 9.18033
799 1X1T NAD 9.23077
800 2JHF NAD 9.28144
801 3H4V NAP 9.28144
802 1AE1 NAP 9.28144
803 3H4V DVP 9.28144
804 3CGB FAD 9.28144
805 1Z0N BCD 9.375
806 1HYH NAD 9.38511
807 4YAC NAI 9.42761
808 1YQD NAP 9.58084
809 3CGD FAD 9.58084
810 3CGD COA 9.58084
811 3CGD NAD 9.58084
812 3FG2 FAD 9.58084
813 3GEG NAD 9.7166
814 5X68 FAD 9.71867
815 3QV1 NAD 9.7561
816 1H5Q NAP 9.81132
817 3GD8 GOL 9.86547
818 1Z82 NDP 9.88024
819 2ZXI FAD 9.88024
820 3F8D FAD 9.90712
821 3I7S PYR 9.93151
822 5K4W THR 9.96885
823 5K4W NAI 9.96885
824 2AHR NAP 10.0386
825 4NBW NAD 10.1167
826 4JK3 NAD 10.1796
827 3ABI NAD 10.1796
828 1SAY PYR 10.1796
829 3C1O NAP 10.1796
830 1CZA G6P 10.1796
831 5G3U FDA 10.1796
832 5G3U ITW 10.1796
833 1CZA GLC 10.1796
834 2VTD LKM 10.1796
835 5ZZ6 NAD 10.479
836 5ZZ6 ADP 10.479
837 6AA8 NAD 10.479
838 4J4H NAI 10.479
839 4J4H 1J1 10.479
840 1VM6 NAD 10.5263
841 1ZEM NAD 10.687
842 5ZI2 ADP 10.7246
843 5ZI2 NAD 10.7246
844 1XHL NDP 10.7744
845 2PK3 A2R 10.9034
846 1NYT NAP 11.0701
847 2DFV NAD 11.0778
848 5TC4 NAD 11.0778
849 1R6D NAD 11.0778
850 1R6D DAU 11.0778
851 1HDG NAD 11.1446
852 5N2I NAP 11.2069
853 4URF NAD 11.2903
854 4NTC FAD 11.3433
855 5FFF NAP 11.3772
856 5FFF 5XC 11.3772
857 1V35 NAI 11.5502
858 3NJ4 AFX 11.6766
859 3NJ4 NAD 11.6766
860 5M67 3D1 11.6766
861 5M67 NAD 11.6766
862 5M67 ADE 11.6766
863 2CDC XYP 11.6766
864 2CDC XYS 11.6766
865 2CDC NAP 11.6766
866 5EPO NAP 11.6766
867 5YB7 FAD 11.6766
868 5YB7 ORN 11.6766
869 2EV9 NAP 11.7871
870 2EV9 SKM 11.7871
871 1V8B NAD 11.976
872 3VZS NAP 11.976
873 3OND NAD 11.976
874 3OND ADN 11.976
875 3VZS CAA 11.976
876 2PT9 S4M 12.1495
877 2PV7 NAD 12.2754
878 1YKF NAP 12.2754
879 5VKT NAP 12.2754
880 4XQC NAD 12.2754
881 4XDY NAI 12.2754
882 4XQC 13D 12.2754
883 4TSK NDP 12.2754
884 3B1F NAD 12.5749
885 2BKA NDP 12.8099
886 2VHW NAI 12.8743
887 5GT9 NAP 12.8743
888 5E4R NAP 12.8743
889 4XDZ NDP 12.8743
890 1RJW ETF 12.8743
891 3U4C NDP 13.1673
892 5FEU NAP 13.1737
893 3KLJ FAD 13.1737
894 6GNA FAD 13.1737
895 1TE2 PGA 13.2743
896 4K26 NDP 13.4058
897 4K26 SFF 13.4058
898 2ZJ1 ARJ 13.4731
899 2ZJ1 NAD 13.4731
900 3LAD FAD 13.4731
901 1EZ4 NAD 13.522
902 4D3F NAP 13.7725
903 2DC1 NAD 13.7725
904 2VT3 ATP 13.7725
905 5YEC ATP 13.7725
906 4RVU NDP 13.7725
907 5TOW NAI 14.0719
908 5TOW ADN 14.0719
909 2WPF FAD 14.0719
910 2WPF WPF 14.0719
911 1A5Z NAD 14.3713
912 5BSH PRO 14.3713
913 4GUS FAD 14.3713
914 4FWE FAD 14.3713
915 4GUT FAD 14.3713
916 4HSU FAD 14.3713
917 5H81 NAP 14.3959
918 1JAY NAP 14.6226
919 1GEE NAD 14.6707
920 5ZEC NAP 14.6707
921 2CVZ NDP 14.9701
922 1W73 NAP 14.9701
923 1W8D NAP 14.9701
924 1W6U NAP 14.9701
925 5JY6 NAD 15.4494
926 1WP4 NDP 15.5689
927 1CF2 NAP 15.5689
928 2AE2 PTO 16.1538
929 2AE2 NAP 16.1538
930 1GPE FAD 16.1677
931 4II2 ATP 16.8675
932 3CH6 311 18.5315
933 3CH6 NAP 18.5315
934 2G5C NAD 18.8623
935 2GZ3 NAP 18.8623
936 1PGP 6PG 18.8623
937 3GGO ENO 19.4611
938 3GGO NAI 19.4611
939 1WVG APR 19.4611
940 4W6Z 8ID 20.0599
941 2F1K NAP 20.4301
942 3RNM FAD 20.6897
943 4YSX FAD 21.7949
944 1SB8 UD2 22.7545
945 1SB8 NAD 22.7545
946 2VOH CIT 23.0769
947 1NNU TCT 23.3333
948 1NNU NAD 23.3333
949 3HAD NAD 23.3766
950 1LSS NAD 23.5714
951 2F5Z FAD 25
952 1OAA OAA 27.4131
953 2O4C NAD 36.5269
954 4ZGS NAD 36.8263
955 1J49 NAD 38.6228
956 5Z21 NAI 38.9222
957 5Z21 OXM 38.9222
958 1SC6 NAD 39.2216
959 4XYB NDP 40.7186
960 1HKU NAD 40.7821
961 5DN9 NAD 43.7126
962 2GSD NAD 45.2096
963 2NAD NAD 45.2096
964 5Z20 NAI 45.8084
965 3KB6 NAD 47.6048
966 3KB6 LAC 47.6048
Pocket No.: 2; Query (leader) PDB : 2DBZ; Ligand: NAP; Similar sites found with APoc: 72
This union binding pocket(no: 2) in the query (biounit: 2dbz.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 3SSO SAH 1.1976
2 5XWC 2IT 1.49701
3 5XWC 8GL 1.49701
4 5XWC NAP 1.49701
5 5GUD CIT 2.09581
6 4C3Y FAD 2.09581
7 3OZ2 FAD 2.39521
8 5JAQ NAI 2.39521
9 4YNU FAD 2.69461
10 4YNU LGC 2.69461
11 3IHG FAD 2.69461
12 4RPL FAD 2.75689
13 4RPL 3UC 2.75689
14 1ZK4 AC0 2.78884
15 4OHU NAD 3.11419
16 4OHU 2TK 3.11419
17 1PA9 CSN 3.16901
18 4UP3 FAD 3.18471
19 2RGO FAD 3.29341
20 5KVS 6XR 3.29341
21 1SNY NAP 3.37079
22 3GDN FAD 3.59281
23 3GDN HBX 3.59281
24 1IZC PYR 3.59281
25 3HDY FDA 3.59281
26 1Q1R FAD 3.59281
27 3HDY FAD 3.59281
28 3HDY GDU 3.59281
29 3V0H I3P 3.59281
30 1UAY ADN 3.71901
31 1U7T NAD 3.83142
32 1N7G GDR 3.89222
33 1N7G NDP 3.89222
34 4HA6 FAD 4.19162
35 6GNC FAD 4.49102
36 2P3V SRT 4.6875
37 3CBG SAH 4.79042
38 2CFC NAD 4.8
39 2C5A NAD 5.08982
40 2C5A GDC 5.08982
41 1ZBQ NAD 5.19878
42 2RBK VN4 5.36398
43 1KNR FAD 5.38922
44 3ICR FAD 5.68862
45 3ICS FAD 5.68862
46 3ICT FAD 5.68862
47 3A28 NAD 5.81395
48 4U8P UDP 5.98802
49 4U8P FDA 5.98802
50 1GEG NAD 6.58683
51 3ZOA ACR 6.58683
52 3Q9T FAY 6.88623
53 1P0Z FLC 7.63359
54 3AY6 BGC 7.80669
55 3AY6 NAI 7.80669
56 4REP FAD 8.08383
57 6FP4 FAD 8.38323
58 2GAG FOA 8.68263
59 2GAG FAD 8.68263
60 1TDF NAP 8.86076
61 1TDF FAD 8.86076
62 3NTA FAD 9.58084
63 3NTD FAD 9.58084
64 3NT6 FAD 9.58084
65 3LN9 FLC 10.0719
66 3RGQ 5P5 10.2564
67 5EB4 FAD 10.479
68 5KUT GDP 10.582
69 1QG6 NAD 10.728
70 1QG6 TCL 10.728
71 2PT9 2MH 12.1495
72 2I7C AAT 13.7809
APoc FAQ