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Receptor
PDB id Resolution Class Description Source Keywords
2DYR 1.8 Å EC: 1.9.3.1 BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STAT BOS TAURUS OXIDOREDUCTASE
Ref.: STRUCTURES AND PHYSIOLOGICAL ROLES OF 13 INTEGRAL L BOVINE HEART CYTOCHROME C OXIDASE EMBO J. V. 26 1713 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CDL C:270;
G:269;
P:1270;
T:1269;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
1464.04 C81 H156 O17 P2 CCCCC...
CHD B:1086;
C:271;
C:525;
J:60;
O:229;
P:1271;
P:1525;
W:1060;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
408.571 C24 H40 O5 C[C@H...
CU A:517;
N:517;
Part of Protein;
Part of Protein;
none;
none;
submit data
63.546 Cu [Cu+2...
CUA B:228;
O:228;
Part of Protein;
Part of Protein;
none;
none;
submit data
127.092 Cu2 [Cu][...
DMU C:272;
M:526;
P:1272;
Z:1526;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
482.562 C22 H42 O11 CCCCC...
HEA A:515;
A:516;
N:515;
N:516;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
852.837 C49 H56 Fe N4 O6 Cc1c2...
MG A:518;
N:1518;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
NA A:519;
N:1519;
Part of Protein;
Part of Protein;
none;
none;
submit data
22.99 Na [Na+]
PEK C:264;
C:265;
G:1263;
P:1264;
P:1265;
T:263;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
768.055 C43 H78 N O8 P CCCCC...
PGV A:524;
A:525;
C:267;
C:268;
N:1266;
P:1267;
P:1268;
Z:1524;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
749.007 C40 H77 O10 P CCCCC...
PSC B:230;
O:1230;
Valid;
Valid;
none;
none;
submit data
759.068 C42 H81 N O8 P CCCCC...
TGL B:521;
D:523;
L:522;
N:1521;
N:1522;
Q:1523;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
891.48 C57 H110 O6 CCCCC...
UNX C:262;
P:1262;
Invalid;
Invalid;
none;
none;
submit data
n/a X *
ZN F:99;
S:99;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DYR 1.8 Å EC: 1.9.3.1 BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STAT BOS TAURUS OXIDOREDUCTASE
Ref.: STRUCTURES AND PHYSIOLOGICAL ROLES OF 13 INTEGRAL L BOVINE HEART CYTOCHROME C OXIDASE EMBO J. V. 26 1713 2007
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 2DYR - PEK C43 H78 N O8 P CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 2DYR - PEK C43 H78 N O8 P CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2DYR - PEK C43 H78 N O8 P CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PEK; Similar ligands found: 86
No: Ligand ECFP6 Tc MDL keys Tc
1 PEK 1 1
2 GP7 0.873418 1
3 ZPE 0.844156 1
4 L9Q 0.818182 1
5 6OU 0.818182 1
6 LOP 0.818182 1
7 PSC 0.785714 0.79661
8 8PE 0.77027 0.980769
9 PEF 0.77027 0.980769
10 PTY 0.77027 0.980769
11 PEH 0.77027 0.980769
12 PEV 0.77027 0.980769
13 9PE 0.76 0.980769
14 EPH 0.741573 1
15 T7X 0.727273 0.711864
16 PCW 0.682353 0.79661
17 PGW 0.639535 0.830189
18 D3D 0.639535 0.830189
19 P50 0.636364 0.924528
20 LIO 0.634146 0.779661
21 6PL 0.634146 0.779661
22 PC7 0.634146 0.779661
23 HGX 0.634146 0.779661
24 PLD 0.634146 0.779661
25 HGP 0.634146 0.779661
26 DR9 0.632184 0.830189
27 PGV 0.632184 0.830189
28 PEE 0.62963 0.962264
29 P6L 0.625 0.830189
30 OZ2 0.617977 0.830189
31 D21 0.609756 0.792453
32 CD4 0.604938 0.807692
33 DLP 0.602151 0.728814
34 P5S 0.595238 0.888889
35 PGT 0.590361 0.811321
36 XP5 0.590361 0.779661
37 LHG 0.590361 0.811321
38 B7N 0.576087 0.711864
39 PCK 0.55914 0.741935
40 F57 0.556962 0.773585
41 LPP 0.556962 0.773585
42 3PH 0.556962 0.773585
43 6PH 0.556962 0.773585
44 7PH 0.556962 0.773585
45 CN3 0.550562 0.807692
46 PX8 0.55 0.754717
47 7P9 0.55 0.773585
48 PX2 0.55 0.754717
49 CN6 0.545455 0.807692
50 PIE 0.536842 0.666667
51 L9R 0.531915 0.728814
52 POV 0.531915 0.728814
53 PII 0.52809 0.694915
54 PGK 0.521277 0.767857
55 P3A 0.520833 0.796296
56 PD7 0.5125 0.773585
57 PSF 0.511628 0.888889
58 3PE 0.511364 0.867925
59 44G 0.505882 0.811321
60 CDL 0.505747 0.735849
61 DGG 0.505155 0.767857
62 M7U 0.5 0.773585
63 8ND 0.5 0.716981
64 52N 0.5 0.683333
65 PIO 0.5 0.683333
66 PIF 0.5 0.683333
67 PIZ 0.494737 0.694915
68 42H 0.494624 0.830508
69 IP9 0.484211 0.694915
70 PC1 0.483516 0.711864
71 MC3 0.483516 0.711864
72 PCF 0.483516 0.711864
73 PDK 0.481132 0.819672
74 44E 0.469136 0.773585
75 S12 0.468085 0.888889
76 1AG 0.463415 0.603774
77 NKP 0.45977 0.792453
78 AGA 0.456522 0.777778
79 LAP 0.444444 0.813559
80 LP3 0.444444 0.813559
81 LPC 0.444444 0.813559
82 OPC 0.417476 0.783333
83 OLC 0.411765 0.603774
84 OLB 0.411765 0.603774
85 NKN 0.404762 0.773585
86 NKO 0.404762 0.773585
Ligand no: 2; Ligand: PGV; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 DR9 1 1
2 PGV 1 1
3 D3D 0.985507 1
4 PGW 0.985507 1
5 OZ2 0.971831 1
6 P6L 0.957747 1
7 PGT 0.855072 0.977778
8 LHG 0.855072 0.977778
9 L9Q 0.766234 0.830189
10 LOP 0.766234 0.830189
11 6OU 0.766234 0.830189
12 CD4 0.75 0.933333
13 P50 0.75 0.826923
14 ZPE 0.746835 0.830189
15 44G 0.746479 0.977778
16 PCW 0.7375 0.706897
17 PGK 0.7375 0.916667
18 P3A 0.731707 0.956522
19 D21 0.72973 0.913043
20 DGG 0.710843 0.916667
21 B7N 0.678571 0.843137
22 CN3 0.675 0.933333
23 GP7 0.674419 0.830189
24 PSC 0.659091 0.706897
25 CN6 0.65 0.933333
26 8PE 0.649351 0.811321
27 PEF 0.649351 0.811321
28 PEH 0.649351 0.811321
29 PTY 0.649351 0.811321
30 PEV 0.649351 0.811321
31 P5S 0.64557 0.826923
32 9PE 0.641026 0.811321
33 PEE 0.641026 0.796296
34 PEK 0.632184 0.830189
35 PLD 0.625 0.689655
36 HGP 0.625 0.689655
37 PC7 0.625 0.689655
38 HGX 0.625 0.689655
39 6PL 0.625 0.689655
40 LIO 0.625 0.689655
41 PIE 0.613636 0.788462
42 7PH 0.608108 0.891304
43 F57 0.608108 0.891304
44 6PH 0.608108 0.891304
45 3PH 0.608108 0.891304
46 LPP 0.608108 0.891304
47 PX8 0.6 0.869565
48 7P9 0.6 0.891304
49 PX2 0.6 0.869565
50 S12 0.595238 0.826923
51 L9R 0.590909 0.666667
52 POV 0.590909 0.666667
53 EPH 0.589474 0.830189
54 OLB 0.589041 0.733333
55 MVC 0.589041 0.733333
56 OLC 0.589041 0.733333
57 AGA 0.585366 0.934783
58 XP5 0.580247 0.689655
59 PII 0.571429 0.823529
60 42H 0.569767 0.741379
61 CDL 0.567901 0.847826
62 PD7 0.56 0.891304
63 3TF 0.55914 0.618182
64 T7X 0.557895 0.843137
65 NKP 0.556962 0.913043
66 PSF 0.555556 0.826923
67 78N 0.554054 0.733333
68 78M 0.554054 0.733333
69 PIZ 0.550562 0.788462
70 PCK 0.549451 0.655738
71 1O2 0.548387 0.618182
72 TGL 0.542857 0.644444
73 M7U 0.542169 0.891304
74 PIF 0.54023 0.807692
75 IP9 0.539326 0.788462
76 PIO 0.522222 0.807692
77 52N 0.522222 0.807692
78 3PE 0.517647 0.735849
79 L2C 0.513514 0.688889
80 DDR 0.513514 0.688889
81 DGA 0.513514 0.688889
82 FAW 0.513514 0.688889
83 44E 0.513158 0.891304
84 DLP 0.510417 0.666667
85 1L2 0.504951 0.618182
86 MC3 0.488636 0.649123
87 PC1 0.488636 0.649123
88 PCF 0.488636 0.649123
89 PDK 0.485437 0.704918
90 GGD 0.481132 0.625
91 LBR 0.469136 0.638298
92 GYM 0.465753 0.711111
93 1QW 0.465753 0.711111
94 LAP 0.465116 0.724138
95 LP3 0.465116 0.724138
96 LPC 0.465116 0.724138
97 PGM 0.457831 0.913043
98 NKO 0.443038 0.891304
99 NKN 0.443038 0.891304
100 SQD 0.43299 0.630769
101 G2A 0.430556 0.652174
102 2JT 0.430556 0.652174
103 CN5 0.426966 0.913043
104 DGD 0.421569 0.607143
105 OPC 0.405941 0.694915
Ligand no: 3; Ligand: PSC; Similar ligands found: 86
No: Ligand ECFP6 Tc MDL keys Tc
1 PSC 1 1
2 PCW 0.884615 1
3 6PL 0.792208 0.981481
4 PLD 0.792208 0.981481
5 LIO 0.792208 0.981481
6 HGP 0.792208 0.981481
7 PC7 0.792208 0.981481
8 HGX 0.792208 0.981481
9 GP7 0.788235 0.79661
10 PEK 0.785714 0.79661
11 DLP 0.758621 0.925926
12 XP5 0.74359 0.981481
13 6OU 0.73494 0.79661
14 L9Q 0.73494 0.79661
15 LOP 0.73494 0.79661
16 ZPE 0.697674 0.79661
17 PCK 0.693182 0.929825
18 POV 0.681818 0.925926
19 L9R 0.681818 0.925926
20 EPH 0.673684 0.79661
21 D3D 0.666667 0.706897
22 PGW 0.666667 0.706897
23 DR9 0.659091 0.706897
24 PGV 0.659091 0.706897
25 P6L 0.651685 0.706897
26 PEV 0.646341 0.779661
27 PTY 0.646341 0.779661
28 PEF 0.646341 0.779661
29 8PE 0.646341 0.779661
30 PEH 0.646341 0.779661
31 P50 0.644444 0.762712
32 OZ2 0.644444 0.706897
33 42H 0.643678 0.964286
34 T7X 0.642105 0.66129
35 D21 0.638554 0.732143
36 9PE 0.638554 0.779661
37 PEE 0.619048 0.79661
38 B7N 0.602151 0.66129
39 PC1 0.597701 0.907407
40 MC3 0.597701 0.907407
41 PCF 0.597701 0.907407
42 CD4 0.595238 0.714286
43 LHG 0.581395 0.689655
44 PGT 0.581395 0.689655
45 P5S 0.568182 0.733333
46 PIE 0.5625 0.645161
47 LPC 0.55814 0.946429
48 LAP 0.55814 0.946429
49 LP3 0.55814 0.946429
50 3PH 0.548781 0.714286
51 6PH 0.548781 0.714286
52 LPP 0.548781 0.714286
53 F57 0.548781 0.714286
54 7PH 0.548781 0.714286
55 OPC 0.546392 0.981818
56 P3A 0.546392 0.706897
57 CN3 0.543478 0.714286
58 PX2 0.542169 0.759259
59 7P9 0.542169 0.714286
60 PX8 0.542169 0.759259
61 CN6 0.521739 0.714286
62 PII 0.521739 0.645161
63 PIZ 0.520833 0.645161
64 PGK 0.515464 0.655738
65 PIF 0.510638 0.634921
66 IP9 0.510417 0.645161
67 PIO 0.510417 0.634921
68 52N 0.510417 0.634921
69 PD7 0.506024 0.714286
70 3PE 0.505495 0.741379
71 44G 0.5 0.689655
72 DGG 0.5 0.655738
73 CDL 0.5 0.709091
74 M7U 0.494505 0.714286
75 PSF 0.488889 0.733333
76 3XU 0.485149 0.825397
77 43Y 0.482353 0.944444
78 PDK 0.477064 0.765625
79 44E 0.464286 0.714286
80 S12 0.463918 0.733333
81 SPU 0.462366 0.819672
82 PC5 0.461538 0.810345
83 8ND 0.45977 0.603448
84 3PC 0.457447 0.888889
85 NKP 0.455556 0.701754
86 AGA 0.452632 0.689655
Ligand no: 4; Ligand: TGL; Similar ligands found: 66
No: Ligand ECFP6 Tc MDL keys Tc
1 TGL 1 1
2 F57 0.745098 0.690476
3 LPP 0.745098 0.690476
4 6PH 0.745098 0.690476
5 7PH 0.745098 0.690476
6 3PH 0.745098 0.690476
7 8ND 0.745098 0.7
8 DDR 0.744681 0.875
9 DGA 0.744681 0.875
10 FAW 0.744681 0.875
11 L2C 0.744681 0.875
12 PX8 0.730769 0.707317
13 7P9 0.730769 0.690476
14 PX2 0.730769 0.707317
15 PD7 0.673077 0.690476
16 CD4 0.655172 0.690476
17 LBR 0.648148 0.794118
18 CDL 0.644068 0.725
19 M7U 0.633333 0.690476
20 LHG 0.633333 0.659091
21 PGT 0.633333 0.659091
22 D21 0.633333 0.674419
23 3PE 0.622951 0.617021
24 G2A 0.622222 0.764706
25 2JT 0.622222 0.764706
26 44E 0.603774 0.690476
27 PII 0.59375 0.604167
28 CN3 0.575758 0.690476
29 GYM 0.571429 0.742857
30 1QW 0.571429 0.742857
31 AGA 0.5625 0.659091
32 56S 0.555556 0.7
33 PGW 0.550725 0.644444
34 D3D 0.550725 0.644444
35 CN6 0.545455 0.690476
36 PGV 0.542857 0.644444
37 PIZ 0.542857 0.604167
38 DR9 0.542857 0.644444
39 PGK 0.535211 0.617021
40 P6L 0.535211 0.644444
41 IP9 0.528571 0.604167
42 OZ2 0.527778 0.644444
43 44G 0.516129 0.659091
44 P3A 0.513514 0.644444
45 PIE 0.513514 0.604167
46 DGG 0.513514 0.617021
47 DAO FTT 0.509091 0.8
48 CNS 0.5 0.724138
49 NKN 0.5 0.651163
50 1O2 0.5 0.622222
51 NKO 0.5 0.651163
52 CUY 0.5 0.724138
53 6UL 0.5 0.724138
54 DGD 0.493506 0.608696
55 3TF 0.493506 0.622222
56 PVC 0.482759 0.710526
57 OLC 0.482759 0.722222
58 OLB 0.482759 0.722222
59 T80 0.472727 0.806452
60 MVC 0.457627 0.722222
61 1L2 0.452381 0.622222
62 PGM 0.444444 0.636364
63 78N 0.440678 0.722222
64 78M 0.440678 0.722222
65 NKP 0.430769 0.636364
66 PJZ 0.42029 0.9
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DYR; Ligand: PEK; Similar sites found with APoc: 82
This union binding pocket(no: 1) in the query (biounit: 2dyr.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 2WOR 2AN 7
3 5UGW GSH 7.05882
4 5NNT DPV 8.10811
5 4O4Z N2O 8.16327
6 5KAU RHQ 8.92857
7 1UUY PPI 10.5882
8 3R9V DXC 10.8392
9 2VWA PTY 10.8911
10 3KP6 SAL 11.0092
11 5IUY BOG 11.7647
12 5OSW DIU 12.2449
13 3G58 988 12.3288
14 1NU4 MLA 12.3711
15 4JYM KKN 12.9412
16 5UC9 MYR 13.6054
17 4UCC ZKW 14.2857
18 1ZED PNP 14.6789
19 3KO0 TFP 14.8936
20 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 15.2174
21 5C1M CLR 15.2174
22 5C1M OLC 15.2174
23 4RW3 TDA 15.2542
24 4RW3 PLM 15.2542
25 5DCH 1YO 15.2941
26 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 15.3061
27 5TVI MYR 16.4384
28 5TVI O8N 16.4384
29 5C9J DAO 16.9492
30 3RV5 DXC 17.3913
31 3O01 DXC 17.4312
32 6GMN F4E 17.9012
33 5CHR 4NC 18.3673
34 4F4S EFO 18.4211
35 2CIX CEJ 18.6441
36 4V3I ASP LEU THR ARG PRO 19.1489
37 3E70 GDP 19.1781
38 1XMY ROL 19.2661
39 1XM4 PIL 19.2661
40 1XMU ROF 19.2661
41 5XJ7 87O 20
42 3HYW DCQ 20.4082
43 3W5N RAM 21.1765
44 6A0S NDP 21.2766
45 2GWH PCI 21.2766
46 3AQT RCO 21.2766
47 5OCA 9QZ 21.4286
48 1I0B PEL 21.4286
49 1GEG GLC 21.7391
50 5OLK DTP 21.9178
51 2YFB SIN 22.0339
52 4WGF HX2 22.3529
53 5V4R MGT 22.8395
54 1JGS SAL 23.2143
55 4TV1 36M 23.2143
56 3N7S 3N7 23.4043
57 5MWE TCE 23.4043
58 3ROE THM 23.4043
59 5AZC PGT 23.7288
60 6BR8 PGV 23.7288
61 1WMA AB3 23.913
62 4ZGM 32M 24.7059
63 1XQP 8HG 24.7706
64 5W7B MYR 25.4237
65 6CB2 OLC 25.8824
66 2BCG GER 26.5306
67 1R6N 434 26.7857
68 5M37 9SZ 27.1186
69 3EYK EYK 27.8912
70 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 27.8912
71 1Q1Y BB2 28.7671
72 3SQP 3J8 28.8136
73 3TDC 0EU 29.4118
74 5N26 CPT 30.2752
75 5IM3 DTP 32.2034
76 5CX8 TG6 32.6087
77 5M36 9SZ 34.2105
78 4OGQ 2WD 38.2353
79 4OGQ 7PH 38.2353
80 4OGQ 1O2 38.2353
81 5LX9 OLB 39.2857
82 5LWY OLB 39.2857
Pocket No.: 2; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 106
This union binding pocket(no: 2) in the query (biounit: 2dyr.bio1) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 4WG0 CHD None
3 4RJD TFP 6.06061
4 1L0I PSR 6.41026
5 2WOR 2AN 7
6 5UGW GSH 7.05882
7 3FXU TSU 7.33945
8 5NNT DPV 8.10811
9 4O4Z N2O 8.16327
10 5KAU RHQ 8.92857
11 3NFD COA 9.15033
12 5FS0 5JC 9.58904
13 1UUY PPI 10.5882
14 2VWA PTY 10.8911
15 1SBR VIB 10.9589
16 3KP6 SAL 11.0092
17 5TWO 7MV 11.1111
18 6EVN PRO PRO GLY PRO ALA GLY PRO PRO GLY 11.7647
19 3F8C HT1 11.7647
20 6AP8 BNY 11.8644
21 1NU4 MLA 12.3711
22 4LWU 20U 13.0435
23 3SP6 IL2 13.5593
24 2Q4X HMH 14.1176
25 5KBE IPH 14.2857
26 1ZED PNP 14.6789
27 3KO0 TFP 14.8936
28 1GT4 UNA 14.8936
29 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 15.2174
30 4DE2 DN3 15.2941
31 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 15.3061
32 5Y02 MXN 15.8879
33 3X01 AMP 16.0714
34 5KOD IAC 16.3265
35 5TVI MYR 16.4384
36 1XZ3 ICF 16.4706
37 4F06 PHB 16.5138
38 5C9J DAO 16.9492
39 4YGF AZM 17.0213
40 3RV5 DXC 17.3913
41 1DTL BEP 17.3913
42 3O01 DXC 17.4312
43 6GMN F4E 17.9012
44 2PRG BRL 18.1818
45 2YLD CMO 18.3486
46 5CHR 4NC 18.3673
47 3NB0 G6P 18.3673
48 4F4S EFO 18.4211
49 2CIX CEJ 18.6441
50 1HBK COA 19.1489
51 1HBK MYR 19.1489
52 4V3I ASP LEU THR ARG PRO 19.1489
53 1TV5 N8E 19.1781
54 1MT1 AG2 19.2308
55 5EY0 GTP 19.2661
56 2W3L DRO 19.4444
57 4LHD GLY 19.5652
58 2R2N KYN 19.6429
59 5XJ7 87O 20
60 3B9Z CO2 20.339
61 2J4D MHF 20.339
62 4IBF 1D5 20.339
63 2BHW NEX 21.1765
64 3W5N RAM 21.1765
65 2GWH PCI 21.2766
66 1PIG GLC GLC 21.2766
67 3LTW HLZ 21.2766
68 3ER9 3AT 21.2766
69 1FX8 BOG 21.4286
70 5OCA 9QZ 21.4286
71 6FS0 E4W 21.4286
72 5OLK DTP 21.9178
73 5I8F ML1 22.449
74 5V4R MGT 22.8395
75 1NF8 BOG 23.1884
76 3B6C SDN 23.2143
77 3N7S 3N7 23.4043
78 1Q7E MET 23.4043
79 5E58 CPZ 23.4043
80 5E70 RCD 23.4043
81 4XCP PLM 23.4043
82 5MWE TCE 23.4043
83 6BR8 6OU 23.7288
84 5AZC PGT 23.7288
85 4ZGM 32M 24.7059
86 4QO5 NAG 25
87 5W7B MYR 25.4237
88 3KPE TM3 25.641
89 6CB2 OLC 25.8824
90 1R6N 434 26.7857
91 4I9B 1KA 27.3973
92 1ZPD CIT 27.6596
93 5FQK 6NT 28.2609
94 2OWZ CIT 28.2609
95 3TDC 0EU 29.4118
96 3WFD AXO 29.7872
97 5X5M 7YU 30.4348
98 5VRH PLM 31.9149
99 4CCW VKC 32.1429
100 5IM3 DTP 32.2034
101 1Q3A NGH 34.0426
102 5M36 9SZ 34.2105
103 4OGQ 7PH 38.2353
104 4OGQ 2WM 38.2353
105 5LX9 OLB 39.2857
106 2QES ADE 42.8571
Pocket No.: 3; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 111
This union binding pocket(no: 3) in the query (biounit: 2dyr.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 1UO5 PIH None
3 1UO4 PIH None
4 5G3N X28 5.88235
5 4RJD TFP 6.06061
6 5KAU RHQ 8.92857
7 2BW7 ECS 10.5023
8 3WJO IPE 10.5882
9 5DUF G7A 10.6383
10 4N9I PCG 10.8696
11 3KP6 SAL 11.0092
12 2FP2 TSA 11.7647
13 5OSW DIU 12.2449
14 4PJT 2YQ 12.766
15 5SVV FMN 12.766
16 4H6Q TFB 13.2653
17 2EFJ 37T 13.5593
18 6CGZ HL6 13.6986
19 3WUR O4B 14.0351
20 4UCC ZKW 14.2857
21 2V0U FMN 14.6789
22 3KO0 TFP 14.8936
23 1MJT NAD 15.2174
24 4RW3 TDA 15.2542
25 4XU6 TDA 15.7143
26 5Y02 HBX 15.8879
27 1VGV UD1 16.0714
28 5A8E XTK 16.4706
29 5C9J DAO 16.9492
30 2W9S TOP 16.9492
31 1DTL BEP 17.3913
32 4OIV XX9 17.4312
33 4WUJ FMN 17.6471
34 4XIZ LPP 17.6871
35 3WCA FPS 17.8571
36 1N5S ADL 17.8571
37 5CHR 4NC 18.3673
38 4R38 RBF 18.3673
39 4F4S EFO 18.4211
40 3W54 RNB 18.6441
41 4FC7 COA 18.8235
42 4FC7 NAP 18.8235
43 5ECP MET 18.8235
44 3E70 GDP 19.1781
45 4OTK MLI 19.3833
46 3QUZ QUV 20
47 2PSJ CEI 20
48 2Z6D FMN 20
49 3FAL LO2 20.1835
50 5DJU FMN 20.339
51 3GGU 017 20.339
52 2XXP DSL 20.5479
53 1N1D C2G 21.1765
54 2GWH PCI 21.2766
55 5FI3 NAP 21.2766
56 3G4Q MCH 21.2766
57 3Q8G PEE 22.0339
58 5T2Z 017 22.0339
59 4WGF HX2 22.3529
60 5V4R MGT 22.8395
61 1T27 PCW 23.2143
62 3PVT 3HC 23.2143
63 5CC2 CKA 23.2143
64 2QZO KN1 23.2143
65 3RUG DB6 23.2877
66 2YOO K2B 23.4043
67 5MWE TCE 23.4043
68 1Q7E MET 23.4043
69 6BR8 PGV 23.7288
70 5AZC PGT 23.7288
71 6BR9 PGV 23.7288
72 2QLX RM4 23.7288
73 6BR8 6OU 23.7288
74 5DJT FMN 23.7288
75 3A51 VDY 23.913
76 4ZGM 32M 24.7059
77 2XFH CL6 24.7059
78 1YOK P6L 24.7059
79 4QO5 NAG 25
80 2E3N 6CM 25
81 5W7B MYR 25.4237
82 2BCG GER 26.5306
83 2J8C U10 26.7857
84 2J8C SPO 26.7857
85 1R6N 434 26.7857
86 2ZCQ B65 27.3973
87 1ZPD CIT 27.6596
88 3VRV YSD 27.6596
89 6EOZ 58K 27.6596
90 6EOZ AKG 27.6596
91 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 27.8912
92 6GKV F2W 28.8136
93 3SQP 3J8 28.8136
94 2HHP FLC 29.7872
95 3F3E LEU 29.7872
96 5GNX BGC 29.7872
97 1TPY 16A 30.3571
98 5HCY 60D 30.4348
99 3CXH SMA 30.4348
100 5DEY 59T 30.5085
101 1LBT T80 31.9149
102 2BP1 FLC 31.9149
103 1PCA CIT 31.9149
104 2C91 TLA 31.9149
105 2A1L PCW 32.1429
106 1SIV PSI 33.9286
107 2XCG XCG 36.1702
108 4OGQ 7PH 38.2353
109 5LX9 OLB 39.2857
110 2A06 SMA 43.4783
111 2D5X L35 45.6522
Pocket No.: 4; Query (leader) PDB : 2DYR; Ligand: PEK; Similar sites found with APoc: 5
This union binding pocket(no: 4) in the query (biounit: 2dyr.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 3GF2 SAL 10.2041
3 1XZ3 ICF 16.4706
4 5MTE BB2 18.3673
5 1Q7E MET 23.4043
Pocket No.: 5; Query (leader) PDB : 2DYR; Ligand: PSC; Similar sites found with APoc: 48
This union binding pocket(no: 5) in the query (biounit: 2dyr.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 1UO5 PIH None
3 4O4Z N2O 8.16327
4 1AUA BOG 8.51064
5 1MID LAP 9.89011
6 3R9V DXC 10.8392
7 2WQ4 SFU 11.5385
8 4GN8 ASO 12.766
9 3KMR EQN 13.5593
10 1RV1 IMZ 13.6986
11 3L1N PLM 13.7615
12 1E4I NFG 14.1176
13 3KAL HGS 14.1176
14 1ZED PNP 14.6789
15 3NJQ NJQ 14.8936
16 3KO0 TFP 14.8936
17 4DDY DN6 15.2941
18 1F6D UDP 16.0714
19 3RV5 DXC 17.3913
20 3E81 SLB 18.3486
21 3NB0 G6P 18.3673
22 5NM7 GLY 19.1781
23 5XJ7 87O 20
24 5UMW RBF 20.339
25 3TL1 JRO 21.1765
26 5EEH P9P 21.7391
27 2HZL PYR 22.9358
28 4MGA 27L 23.2143
29 1Q7E MET 23.4043
30 4XCP PLM 23.4043
31 1OFZ FUC 23.913
32 1R6N 434 26.7857
33 5M37 9SZ 27.1186
34 6GN6 MAL 29.4118
35 3ZXE PGZ 31.9149
36 6BVM EBV 33.8983
37 4URX FK1 33.8983
38 6BVK EAV 33.8983
39 6BVJ EAS 33.8983
40 6BVL EBY 33.8983
41 6D56 FVM 33.8983
42 6BVI EC4 33.8983
43 6D5G FVD 33.8983
44 6D55 FWA 33.8983
45 3HP9 CF1 36.1702
46 4OGQ 7PH 38.2353
47 5OPM DTP 38.9831
48 5LWY OLB 39.2857
Pocket No.: 6; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 153
This union binding pocket(no: 6) in the query (biounit: 2dyr.bio1) has 37 residues
No: Leader PDB Ligand Sequence Similarity
1 2WOR 2AN 7
2 5UGW GSH 7.05882
3 1NTV ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 7.14286
4 4O4Z N2O 8.16327
5 2UXI G50 8.47458
6 3SE5 ANP 8.69565
7 1L6O SER LEU LYS LEU MET THR THR VAL 9.47368
8 2WL9 MBD 10.1695
9 3GF2 SAL 10.2041
10 1UUY PPI 10.5882
11 3R9V DXC 10.8392
12 4RKK GLC GLC GLC GLC GLC GLC 10.8696
13 4I90 CHT 10.8844
14 2VWA PTY 10.8911
15 3B5J 12D 10.9589
16 1SBR VIB 10.9589
17 3F8C HT1 11.7647
18 5IUY BOG 11.7647
19 3G58 988 12.3288
20 1NU4 MLA 12.3711
21 4RHP PEF 12.5
22 4XNV BUR 12.5
23 3BF8 MLA 12.766
24 5URY PAM 12.7753
25 2A3I C0R 12.9412
26 1P72 THM 13.0435
27 2GBB CIT 13.0435
28 3KYQ DPV 13.0653
29 4N6H EJ4 13.2653
30 5UC9 MYR 13.6054
31 3L1N PLM 13.7615
32 5OVV ACE ILE GLU SER THR GLU ILE 13.8211
33 3W9F I3P 14.2857
34 5KAX RHQ 14.2857
35 5B0I BOG 14.2857
36 2O1V ADP 14.2857
37 3E3U NVC 14.2857
38 1ZED PNP 14.6789
39 2PSM BAM 14.876
40 3NJQ NJQ 14.8936
41 2VCN ISZ 14.8936
42 2OZ5 7XY 15.0685
43 5C1M OLC 15.2174
44 5X80 SAL 15.2174
45 5C1M CLR 15.2174
46 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 15.2174
47 5C1M 4VO 15.2174
48 4IHQ ADP 15.2542
49 4DDY DN6 15.2941
50 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 15.3061
51 5Y02 MXN 15.8879
52 4GBD MCF 16.0714
53 5XNA SHV 16.3265
54 5U9J GER 16.3265
55 5TVI MYR 16.4384
56 5TVI O8N 16.4384
57 5MZI FYK 16.4706
58 3LGG CFE 16.5138
59 2AK3 AMP 16.9492
60 1ZGA HMK 17.3469
61 3RV5 DXC 17.3913
62 3THR C2F 17.3913
63 4U00 ADP 17.3913
64 3O01 DXC 17.4312
65 1O6U PLM 17.4312
66 2DUA OXL 17.8082
67 3ZQE DXC 18.3486
68 2CIX CEJ 18.6441
69 2HIM ASN 18.6441
70 1HBK COA 19.1489
71 1XPJ TLA 19.1489
72 3ZJQ NCA 19.1489
73 4UMJ BFQ 19.1489
74 4V3I ASP LEU THR ARG PRO 19.1489
75 5U97 PIT 19.1781
76 1TV5 N8E 19.1781
77 1XMY ROL 19.2661
78 2W3L DRO 19.4444
79 4G86 BNT 19.5652
80 1O72 PC 19.6429
81 6B21 C9V 19.6429
82 5XJ7 87O 20
83 5DNC ASN 20.339
84 4LH7 NMN 20.5479
85 2Q1H AS4 20.7048
86 2BHW NEX 21.1765
87 3W5N RAM 21.1765
88 5GWE GWM 21.1765
89 3AQT RCO 21.2766
90 5OCA 9QZ 21.4286
91 2OKL BB2 21.4286
92 4B1X LAB 21.4286
93 1XW6 GSH 21.4286
94 5V3Y 5V8 21.9178
95 5GQI CTP 22.0183
96 5HZ9 5M8 22.0339
97 1CZA ADP 22.0339
98 2HZL PYR 22.9358
99 5HCN DAO 22.9358
100 1NF8 BOG 23.1884
101 4MGA 27L 23.2143
102 5EE7 5MV 23.2143
103 4TV1 36M 23.2143
104 4MG9 27K 23.2143
105 3UUA 0CZ 23.2143
106 5WGQ EST 23.2143
107 4MGB XDH 23.2143
108 5DX3 EST 23.2143
109 4MGD 27N 23.2143
110 3N7S 3N7 23.4043
111 3GKJ HC3 23.4043
112 4KVL PLM 23.5294
113 5UFS 1TA 23.5294
114 3TKY N7I 23.913
115 2FKW RG1 24.3902
116 4COL DTP 24.7059
117 1X8D RNS 25
118 6CB2 OLC 25.8824
119 5JF2 SF7 26.5306
120 4UBS DIF 27.0588
121 5M37 9SZ 27.1186
122 2XRH NIO 27.6596
123 4WBD CIT 27.6596
124 1Q1Y BB2 28.7671
125 1XVB 3BR 28.8136
126 5UV1 0FV 29.3578
127 3TDC 0EU 29.4118
128 1SJD NPG 29.4118
129 5ET3 60C 30
130 5N26 73M 30.2752
131 5N26 CPT 30.2752
132 4S00 AKR 30.4348
133 5VRH OLB 31.9149
134 4OB6 S2T 32.1429
135 5IM3 DTP 32.2034
136 3P9T TCL 32.8767
137 4URX FK1 33.8983
138 6D59 FVJ 33.8983
139 3RMK BML 33.9286
140 2IBZ UQ6 34.0426
141 5M36 9SZ 34.2105
142 4P6X HCY 34.2466
143 5W6Y TRP 35.5932
144 3HP9 CF1 36.1702
145 4YZ5 SLT 36.1702
146 1W96 S1A 36.1702
147 5FPN KYD 36.7347
148 4OGQ 1O2 38.2353
149 1T0S BML 39.2857
150 5LWY OLA 39.2857
151 5LWY OLB 39.2857
152 2YJD YJD 41.3043
153 4J24 EST 41.3043
154 4J26 EST 50
Pocket No.: 7; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 10
This union binding pocket(no: 7) in the query (biounit: 2dyr.bio1) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 1TIQ COA 5.50459
2 2NPA MMB 13.5593
3 1RV1 IMZ 13.6986
4 5X13 HC4 15.0685
5 5C1M OLC 15.2174
6 4DE3 DN8 15.2941
7 2GJP MAL 16.3265
8 6CGN DA 20.5479
9 4R29 SAM 20.9821
10 2BCG GER 26.5306
Pocket No.: 8; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 14
This union binding pocket(no: 8) in the query (biounit: 2dyr.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 1LNX URI 9.87654
2 4V2O CLQ 12.1951
3 4DOL PLM 12.766
4 5DCH 1YO 15.2941
5 4Q9N 0WE 15.6463
6 4D3S BOG 21.7391
7 3BPX SAL 21.7391
8 5OLK DTP 21.9178
9 2VDY HCY 25.5319
10 5B4B LP5 26.7857
11 3KU0 ADE 28.5714
12 4PEG 5GP 34.7826
13 4OGQ 2WD 38.2353
14 5OM2 DXT 40.678
Pocket No.: 9; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 26
This union binding pocket(no: 9) in the query (biounit: 2dyr.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 3QMK SGN IDS SGN IDS 10.7477
2 3G4G D71 12.7753
3 2RH1 CLR 14.6789
4 3G08 FEE 15.2542
5 5WL1 CUY 16.1616
6 5CSD ACD 17.3469
7 3SFI 3SF 17.8571
8 3L9R L9R 19.3878
9 3L9R L9Q 19.3878
10 1LN1 DLP 19.6429
11 2BHW XAT 21.1765
12 3SCM LGN 21.7391
13 3HUJ AGH 21.7391
14 4F7E 0SH 22.9358
15 1EWF PC1 23.2143
16 4CVZ TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 23.5294
17 1GNI OLA 24.6575
18 5AAV GW5 25
19 2QE4 JJ3 25
20 3G5N PB2 27.5229
21 2AX9 BHM 28.5714
22 3T6E UQ9 30.3571
23 3TJH SER PRO LEU ASP SER LEU TRP TRP ILE 30.5882
24 4WO4 JLS 35.5932
25 3WYJ H78 36.1702
26 2I0G I0G 41.3043
Pocket No.: 10; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 5
This union binding pocket(no: 10) in the query (biounit: 2dyr.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 6GH1 ARG LEU PRO ALA LYS ALA PRO LEU LEU 17.6471
2 4C9G CXT 21.7391
3 5JHD GLY ILE LEU GLY PHE VAL PHE THR LEU 25.5319
4 2Z7I 742 25.8503
5 3T6E MQ9 30.3571
Pocket No.: 11; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 3
This union binding pocket(no: 11) in the query (biounit: 2dyr.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3X01 AMP 16.0714
2 5E58 CPZ 23.4043
3 4WZ8 3W7 35.5932
Pocket No.: 12; Query (leader) PDB : 2DYR; Ligand: PEK; Similar sites found with APoc: 42
This union binding pocket(no: 12) in the query (biounit: 2dyr.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 4RJD TFP 6.06061
2 6CS9 PIO 9.7561
3 1SBR VIB 10.9589
4 4RYV ZEA 13.0435
5 4YRI 4JH 13.0435
6 6BK3 B2S 14.1176
7 1JQY A32 15.2174
8 4RW3 SHV 15.2542
9 4DE3 DN8 15.2941
10 2CBO TH2 15.2941
11 5XQL C2E 16.0714
12 3FJG 3PG 16.3265
13 3K7S R52 16.3265
14 2UW1 GVM 16.9492
15 5X3R 7Y3 17.3469
16 1DTL BEP 17.3913
17 6CS8 F9Y 17.8571
18 4OEV OXL 18.6441
19 1HBK MYR 19.1489
20 4ZJS 4P0 19.1489
21 5IKR ID8 19.1489
22 5JNW 6LJ 19.2661
23 5EY0 GTP 19.2661
24 4G86 BNT 19.5652
25 2XUA SHF 20
26 1U6R IOM 20.4082
27 4LH7 NMN 20.5479
28 4DXJ 0M9 21.7391
29 6BR8 6OU 23.7288
30 1Z5U CMP 23.913
31 1HFU NAG NDG 24.6575
32 4Q86 AMP 24.6575
33 2J0B UDP 25.4237
34 3RLB VIB 28.2609
35 1WNB BTL 29.5918
36 2BP1 FLC 31.9149
37 2C91 TLA 31.9149
38 4G8R 96P 32.2034
39 5CX8 RP3 32.6087
40 1VRP IOM 33.6735
41 4K10 NI9 33.8983
42 4OGQ UMQ 38.2353
Pocket No.: 13; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 65
This union binding pocket(no: 13) in the query (biounit: 2dyr.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 2UXI G50 8.47458
2 1AUA BOG 8.51064
3 1DEK DGP 10.5882
4 3R9V DXC 10.8392
5 4I90 CHT 10.8844
6 5FH7 5XL 10.9589
7 1LEK GLU GLN TYR LYS PHE TYR SER VAL 11.5646
8 5OSW DIU 12.2449
9 3G58 988 12.3288
10 3KDU NKS 13.5593
11 3L1N PLM 13.7615
12 1E4I NFG 14.1176
13 2V5E SCR 14.1176
14 2I74 MAN MAN MAN MAN 14.2857
15 4LHM AZZ 14.6789
16 1ZEI CRS 15.0943
17 5C1M CLR 15.2174
18 3G08 FEE 15.2542
19 5TIV A3P 15.4185
20 2D5Z L35 16.4384
21 3GXO MQA 17.8571
22 3ZQE DXC 18.3486
23 4LY9 1YY 19.1489
24 4LY9 S6P 19.1489
25 4U0S ADP 19.1781
26 1XMY ROL 19.2661
27 3A8H TAY 19.5652
28 4MRP GSH 19.6429
29 3H0A D30 20.1835
30 2XXP DSL 20.5479
31 3AQT RCO 21.2766
32 1I0B PEL 21.4286
33 5EEH P9P 21.7391
34 5V3Y 5V8 21.9178
35 1J78 VDY 22.0339
36 4WGF HX2 22.3529
37 5HCN DAO 22.9358
38 4MGA 27L 23.2143
39 4MG9 27K 23.2143
40 1T27 PCW 23.2143
41 5EK3 5PK 23.4043
42 6BR8 PGV 23.7288
43 1OFZ FUL 23.913
44 5O42 BGC 23.913
45 5O42 NAD 23.913
46 5O42 9JW 23.913
47 4COL DTP 24.7059
48 1XQP 8HG 24.7706
49 3LN0 52B 24.7706
50 2Z7I 742 25.8503
51 5B4B LP5 26.7857
52 5M37 9SZ 27.1186
53 1EM6 CP4 27.1186
54 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 27.8912
55 4MA7 P2Z 28.8136
56 4MNS 2AX 28.8136
57 3SQP 3J8 28.8136
58 1GVE CIT 31.9149
59 5VRH OLB 31.9149
60 2A1L PCW 32.1429
61 3HP9 CF1 36.1702
62 3WYJ H78 36.1702
63 4OGQ 1O2 38.2353
64 4OGQ 2WD 38.2353
65 5LWY OLB 39.2857
Pocket No.: 14; Query (leader) PDB : 2DYR; Ligand: PEK; Similar sites found with APoc: 13
This union binding pocket(no: 14) in the query (biounit: 2dyr.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 3F8C HT1 11.7647
2 3L1N PLM 13.7615
3 4V1F BQ1 15.1163
4 2Q3M MLA 15.2941
5 6B21 C9V 19.6429
6 1TO9 HMH 20.5479
7 2BHW NEX 21.1765
8 5V3Y 5V8 21.9178
9 1NF8 BOG 23.1884
10 4DNJ ANN 28.2609
11 5ET3 60C 30
12 5VRH OLB 31.9149
13 5FPN KYD 36.7347
Pocket No.: 15; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 56
This union binding pocket(no: 15) in the query (biounit: 2dyr.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO4 PIH None
2 3SE5 ANP 8.69565
3 1MID LAP 9.89011
4 3GF2 SAL 10.2041
5 4A38 BZS 10.2041
6 5L7G LYS SER LEU LEU GLN GLN LEU LEU THR GLU 10.9589
7 1RL4 BL5 11.7647
8 1W3R PYR 11.8644
9 4V2O CLQ 12.1951
10 4RHP PEF 12.5
11 4DOL PLM 12.766
12 4JYM KKN 12.9412
13 2GBB CIT 13.0435
14 4HBM 0Y7 13.6986
15 5DQW ADP 14.218
16 5KAX RHQ 14.2857
17 4UCC ZKW 14.2857
18 1TZD ADP 14.2857
19 2RH1 CLR 14.6789
20 3NJQ NJQ 14.8936
21 5CX6 CDP 15.0685
22 2OZ5 7XY 15.0685
23 4RW3 TDA 15.2542
24 2Z9I GLY ALA THR VAL 15.2542
25 5Y02 HBX 15.8879
26 5TVI O8N 16.4384
27 2W9S TOP 16.9492
28 4IA6 EIC 17.8571
29 6CS8 F9Y 17.8571
30 3KXC PLM 19.1489
31 3E70 GDP 19.1781
32 5U97 PIT 19.1781
33 1XM4 PIL 19.2661
34 6B21 C9V 19.6429
35 5IJJ I6P 20.1835
36 3TL1 JRO 21.1765
37 3SDV 911 21.7391
38 3HUJ AGH 21.7391
39 2BHZ MAL 21.9178
40 2Q8G AZX 22.0339
41 2HZL PYR 22.9358
42 4TV1 36M 23.2143
43 3UUA 0CZ 23.2143
44 3AI3 SOE 23.8532
45 1GNI OLA 24.6575
46 1N9L FMN 26.087
47 5ET3 60C 30
48 5N26 CPT 30.2752
49 2BP1 FLC 31.9149
50 4OB6 S2T 32.1429
51 5CX8 TG6 32.6087
52 3P9T TCL 32.8767
53 4URX FK1 33.8983
54 2HW2 RFP 35.5932
55 1HFE CYS 38.8235
56 1T0S BML 39.2857
Pocket No.: 16; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 5
This union binding pocket(no: 16) in the query (biounit: 2dyr.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 3T3Z 9PL 13.6564
2 6H8S FSZ 14.1176
3 2UW1 GVM 16.9492
4 3W54 RNB 18.6441
5 1X8D RNS 25
Pocket No.: 17; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 53
This union binding pocket(no: 17) in the query (biounit: 2dyr.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 5N8V KZZ 2.89855
2 1L0I PSR 6.41026
3 2CB8 MYA 10.7143
4 3KIV ACA 12.6582
5 4RYV ZEA 13.0435
6 2V5E SCR 14.1176
7 2X1L MET 15.0685
8 5CX6 CDP 15.0685
9 2XQO CTR 15.0685
10 4V1F BQ1 15.1163
11 6GL8 F3Q 15.1163
12 5V03 658 15.2542
13 4DE3 DN8 15.2941
14 5WL1 D3D 16.1616
15 3T03 3T0 16.6667
16 2UW1 GVM 16.9492
17 4E70 N7I 17.3469
18 1M48 FRG 17.3913
19 1UCD U5P 17.6471
20 5AEW BNL 17.8082
21 2YLD CMO 18.3486
22 3NB0 G6P 18.3673
23 5K53 STE 18.3673
24 5MTE BB2 18.3673
25 2QQD AG2 18.8679
26 1HBK MYR 19.1489
27 6B4H IHP 19.1781
28 1MT1 AG2 19.2308
29 4MRP GSH 19.6429
30 3B9Z CO2 20.339
31 2YVE MBT 20.4082
32 5A86 D7E 21.0884
33 6GL0 GLC BGC BGC 21.1765
34 2WG9 OCA 21.4286
35 6DIO CIT 22.0183
36 4DW4 U5P 22.0183
37 1J78 VDY 22.0339
38 1IYB 5GP 23.4043
39 4XCP PLM 23.4043
40 6BR9 6OU 23.7288
41 4Q0A 4OA 23.7288
42 4DOO DAO 23.7288
43 4WQ2 3SU 26.0274
44 5F74 AMP 27.1186
45 4DR9 BB2 27.6596
46 2XDQ MGX 29.4118
47 3WFD AXO 29.7872
48 1XX4 BAM 29.7872
49 3G6M CFF 30.4348
50 2E9L PLM 32.1429
51 5CX8 RP3 32.6087
52 4YSX E23 35.1064
53 4OGQ UMQ 38.2353
Pocket No.: 18; Query (leader) PDB : 2DYR; Ligand: TGL; Similar sites found with APoc: 9
This union binding pocket(no: 18) in the query (biounit: 2dyr.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 3D78 NBB 10.7143
2 5NTP 98E 11.0092
3 3FUR Z12 11.1111
4 2OBD PCW 12.2449
5 3WCA FPS 17.8571
6 3QUZ QUV 20
7 3SCM LGN 21.7391
8 2QE4 JJ3 25
9 3VRV YSD 27.6596
Pocket No.: 19; Query (leader) PDB : 2DYR; Ligand: PEK; Similar sites found with APoc: 3
This union binding pocket(no: 19) in the query (biounit: 2dyr.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 3KYQ DPV 13.0653
2 2RH1 CLR 14.6789
3 3OBT SLB 16.0714
Pocket No.: 20; Query (leader) PDB : 2DYR; Ligand: PGV; Similar sites found with APoc: 8
This union binding pocket(no: 20) in the query (biounit: 2dyr.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV 8.10811
2 3CHT 4NB 12.5
3 6BMM OLB 16.0714
4 1XZ3 ICF 16.4706
5 4RC8 STE 17.0213
6 1TV5 A26 19.1781
7 6BMS PLM 19.5652
8 2FR3