-->
Receptor
PDB id Resolution Class Description Source Keywords
2FKW 2.45 Å NON-ENZYME: OTHER STRUCTURE OF LH2 FROM RPS. ACIDOPHILA CRYSTALLIZED IN LIPIDI MESOPHASES RHODOBLASTUS ACIDOPHILUS LIGHT HARVESTING COMPLEX B800-B850 LIPIDIC MESOPHASE CRYSTALLIZATION CUBIC PHASE SPONGE PHASE LDAO RHODOPIN CAROTENOID MEMBRANE PROTEIN PHOTOSYNTHESIS
Ref.: ROOM TO MOVE: CRYSTALLIZING MEMBRANE PROTEINS IN SW LIPIDIC MESOPHASES J.MOL.BIOL. V. 357 1605 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BCL A:1501;
A:1701;
B:1601;
C:1502;
C:1702;
D:1602;
E:1503;
E:1703;
F:1603;
G:1504;
G:1704;
H:1604;
I:1505;
I:1705;
J:1605;
K:1506;
K:1706;
L:1606;
M:1507;
M:1707;
N:1607;
O:1508;
O:1708;
P:1608;
R:1509;
R:1709;
S:1609;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
911.504 C55 H74 Mg N4 O6 CC[C@...
LDA A:1816;
A:1817;
B:1801;
C:1815;
C:1821;
D:1802;
E:1822;
E:1823;
F:1803;
G:1814;
G:1824;
H:1804;
I:1812;
I:1813;
I:1825;
J:1805;
K:1810;
K:1826;
L:1806;
M:1811;
M:1827;
N:1807;
O:1820;
P:1808;
R:1809;
R:1818;
R:1819;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
229.402 C14 H31 N O CCCCC...
RG1 D:1402;
F:1403;
H:1404;
J:1405;
L:1406;
N:1407;
P:1408;
R:1401;
S:1409;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
715.013 C46 H66 O6 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2FKW 2.45 Å NON-ENZYME: OTHER STRUCTURE OF LH2 FROM RPS. ACIDOPHILA CRYSTALLIZED IN LIPIDI MESOPHASES RHODOBLASTUS ACIDOPHILUS LIGHT HARVESTING COMPLEX B800-B850 LIPIDIC MESOPHASE CRYSTALLIZATION CUBIC PHASE SPONGE PHASE LDAO RHODOPIN CAROTENOID MEMBRANE PROTEIN PHOTOSYNTHESIS
Ref.: ROOM TO MOVE: CRYSTALLIZING MEMBRANE PROTEINS IN SW LIPIDIC MESOPHASES J.MOL.BIOL. V. 357 1605 2006
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2FKW - RG1 C46 H66 O6 CC(=C/C=C/....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RG1; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 RG1 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 105
This union binding pocket(no: 1) in the query (biounit: 2fkw.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 3F8C HT1 None
2 5UGW GSH None
3 5M36 9SZ None
4 5CHR 4NC None
5 6CB2 OLC None
6 1J78 OLA None
7 1UO5 PIH None
8 5NM7 GLY None
9 1ZEI CRS None
10 5Y02 HBX None
11 5M37 9SZ None
12 4WGF HX2 None
13 4TV1 36M None
14 4WG0 CHD None
15 1UUY PPI None
16 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO None
17 6BJO DUY None
18 1EYQ NAR None
19 4MGA 27L None
20 4O4Z N2O None
21 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA None
22 1MID LAP None
23 2PEH LYS ARG LYS SER ARG TRP ASP GLU THR PRO None
24 4XCP PLM None
25 2D5X L35 None
26 1RL4 BL5 None
27 5WGQ EST None
28 3KP6 SAL None
29 1L0I PSR None
30 4DR9 BB2 None
31 6EVN PRO PRO GLY PRO ALA GLY PRO PRO GLY None
32 1M48 FRG None
33 5EY0 GTP None
34 3G5K BB2 None
35 6FBA D48 None
36 4TUZ 36J None
37 1XMY ROL 3.77358
38 3G58 988 3.77358
39 1XM4 PIL 3.77358
40 1XMU ROF 3.77358
41 1I0B PEL 4.87805
42 2GWH PCI 5.66038
43 1NU4 MLA 5.66038
44 2BHW NEX 5.66038
45 5X80 SAL 7.31707
46 3X01 AMP 7.31707
47 4COL DTP 7.31707
48 2RH1 CAU 7.54717
49 4OGQ 7PH 7.82123
50 4OGQ 1O2 7.82123
51 3SQP 3J8 9.43396
52 3HW5 AMP 9.43396
53 1YYE 196 9.43396
54 3RMK BML 9.43396
55 4J26 EST 9.43396
56 3HP9 CF1 9.7561
57 5XJ7 87O 11.3208
58 5IM3 DTP 11.3208
59 6MVU K4V 11.3208
60 1XZ3 ICF 12.1951
61 5OLK DTP 12.1951
62 5FUS DAO 13.2075
63 5AZC PGT 13.2075
64 1T0S BML 13.2075
65 4F4S EFO 13.2075
66 1ZPD CIT 13.2075
67 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 14.6341
68 4MRP GSH 14.6341
69 1XX4 BAM 14.6341
70 4DE3 DN8 14.6341
71 2PX6 DH9 14.6341
72 5OCA 9QZ 15.0943
73 2HZL PYR 15.0943
74 1EM6 CP4 15.0943
75 5W7B MYR 16.9811
76 5HCN DAO 16.9811
77 5AEW BNL 17.0732
78 3N7S 3N7 18.8679
79 5LX9 OLB 19.5122
80 1ZED PNP 19.5122
81 5LWY OLB 19.5122
82 3L1N PLM 20.7547
83 3E70 GDP 21.9512
84 4ZGM 32M 21.9512
85 5CX6 CDP 21.9512
86 3GF2 SAL 21.9512
87 2Y69 CHD 24.3902
88 5Z84 CHD 24.3902
89 5W97 CHD 24.3902
90 5ZCO CHD 24.3902
91 5ZCO PEK 24.3902
92 2DYS PGV 24.3902
93 2DYR PGV 24.3902
94 5ZCO PGV 24.3902
95 5Z84 PGV 24.3902
96 6FFI D8B 24.5283
97 3NB0 G6P 26.8293
98 1M2Z BOG 28.5714
99 1GJW GLC 29.2683
100 1R6N 434 32.0755
101 3W5N RAM 32.0755
102 2BCG GER 35.8491
103 6C1R EFD 39.0244
104 5C1M OLC 43.3962
105 5C1M CLR 43.3962
Pocket No.: 2; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 5
This union binding pocket(no: 2) in the query (biounit: 2fkw.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 6A0S NDP None
2 1TV5 N8E None
3 1NF8 BOG None
4 2WG9 OCA None
5 2E9L PLM 11.3208
Pocket No.: 3; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 11
This union binding pocket(no: 3) in the query (biounit: 2fkw.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 5UMW RBF None
2 2Z9I GLY ALA THR VAL None
3 3E3U NVC 7.31707
4 2CIX CEJ 7.54717
5 1NQ7 HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU 13.2075
6 6B2W AG2 17.0732
7 1GEG GLC 17.0732
8 3AI3 SOE 20.7547
9 3TDC 0EU 24.3902
10 5V3Y 5V8 26.8293
11 4V1F BQ1 31.7073
Pocket No.: 4; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 3
This union binding pocket(no: 4) in the query (biounit: 2fkw.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 1C9K 5GP None
2 5WL1 D3D 24.3902
3 5U0L 8YP 29.2683
Pocket No.: 5; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 4
This union binding pocket(no: 5) in the query (biounit: 2fkw.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 3G08 FEE 12.1951
2 4RC8 STE 21.9512
3 5WL1 CUY 24.3902
4 1E4I NFG 36.5854
Pocket No.: 6; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 8
This union binding pocket(no: 6) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 5CYV WCA None
2 1RV1 IMZ None
3 4MG9 27K None
4 3W54 RNB 4.87805
5 4IA6 EIC 13.2075
6 5K53 STE 15.0943
7 5KD8 TNR 16.9811
8 5X13 HC4 24.3902
Pocket No.: 7; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 2
This union binding pocket(no: 7) in the query (biounit: 2fkw.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 5VRH OLB 14.6341
2 1DTL BEP 36.5854
Pocket No.: 8; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 4
This union binding pocket(no: 8) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 4O08 PO6 None
2 3KIF GDL None
3 4RW3 TDA 18.8679
4 6BMS PLM 19.5122
Pocket No.: 9; Query (leader) PDB : 2FKW; Ligand: RG1; Similar sites found with APoc: 2
This union binding pocket(no: 9) in the query (biounit: 2fkw.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 6CGN DA None
2 4DOO DAO 5.66038
APoc FAQ
Feedback