Receptor
PDB id Resolution Class Description Source Keywords
2FUT 2.3 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF HEPARINASE II COMPLEXED WITH A DISACCHA PRODUCT PEDOBACTER HEPARINUS ALPHA PLUS BETA SUGAR BINDING PROTEIN
Ref.: CRYSTAL STRUCTURE OF HEPARINASE II FROM PEDOBACTER AND ITS COMPLEX WITH A DISACCHARIDE PRODUCT. J.BIOL.CHEM. V. 281 15525 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZN A:1;
B:2;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
65.409 Zn [Zn+2...
SGN UAP C:1;
D:1;
 Valid;
Valid;
 none;
none;
 submit data
575.454 n/a S(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3E7J 2.1 Å EC: 3.-.-.- HEPARINASEII H202A/Y257A DOUBLE MUTANT COMPLEXED WITH A HEPA SULFATE TETRASACCHARIDE SUBSTRATE PEDOBACTER HEPARINUS ALPHA AND BETA LYASE ALPHA6/ALPHA6 INCOMPLETE TOROID SUGARPROTEIN LYASE
Ref.: CATALYTIC MECHANISM OF HEPARINASE II INVESTIGATED B SITE-DIRECTED MUTAGENESIS AND THE CRYSTAL STRUCTURE SUBSTRATE. J.BIOL.CHEM. V. 285 20051 2010
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 3E80 - NDG GCD n/a n/a
2 2FUT - SGN UAP n/a n/a
3 3E7J - NAG GCU NAG GCD n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 3E80 - NDG GCD n/a n/a
2 2FUT - SGN UAP n/a n/a
3 3E7J - NAG GCU NAG GCD n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 3E80 - NDG GCD n/a n/a
2 2FUT - SGN UAP n/a n/a
3 3E7J - NAG GCU NAG GCD n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SGN UAP; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 SGN UAP 1 1
2 SGN IDU 0.611111 0.924242
3 SGN IDS SGN UAP 0.482456 0.925373
4 SGN IDS SGN IDS SGN UAP 0.482456 0.925373
5 SGN IDS SGN IDS 0.476636 0.895522
6 SGN IDS SGN IDS SGN 0.464912 0.925373
7 GNS UAP 0.458333 0.925373
Similar Ligands (3D)
Ligand no: 1; Ligand: SGN UAP; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3E7J; Ligand: NAG GCU NAG GCD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3e7j.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3E7J; Ligand: NAG GCU NAG GCD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3e7j.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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