Receptor
PDB id Resolution Class Description Source Keywords
2G36 2.5 Å EC: 6.1.1.2 CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1. (TRYPTOPHAN-TRNA LIGASE)(TRPRS) (TM0492) FROM THERMOTOGA MA2 .50 A RESOLUTION THERMOTOGA MARITIMA TM0492 TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHALIGASE)(TRPRS) STRUCTURAL GENOMICS JOINT CENTER FOR STRUCGENOMICS JCSG PROTEIN STRUCTURE INITIATIVE PSI LIGASE
Ref.: STRUCTURE OF A TRYPTOPHANYL-TRNA SYNTHETASE CONTAIN IRON-SULFUR CLUSTER. ACTA CRYSTALLOGR.,SECT.F V. 66 1326 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SF4 A:400;
Part of Protein;
none;
submit data
351.64 Fe4 S4 [S]12...
TRP A:401;
Valid;
none;
submit data
204.225 C11 H12 N2 O2 c1ccc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2G36 2.5 Å EC: 6.1.1.2 CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1. (TRYPTOPHAN-TRNA LIGASE)(TRPRS) (TM0492) FROM THERMOTOGA MA2 .50 A RESOLUTION THERMOTOGA MARITIMA TM0492 TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHALIGASE)(TRPRS) STRUCTURAL GENOMICS JOINT CENTER FOR STRUCGENOMICS JCSG PROTEIN STRUCTURE INITIATIVE PSI LIGASE
Ref.: STRUCTURE OF A TRYPTOPHANYL-TRNA SYNTHETASE CONTAIN IRON-SULFUR CLUSTER. ACTA CRYSTALLOGR.,SECT.F V. 66 1326 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 2G36 - TRP C11 H12 N2 O2 c1ccc2c(c1....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 2G36 - TRP C11 H12 N2 O2 c1ccc2c(c1....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1YI8 - TRP C11 H12 N2 O2 c1ccc2c(c1....
2 2A4M Kd = 30 uM TRP C11 H12 N2 O2 c1ccc2c(c1....
3 1YID Kd = 10 uM ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
4 2G36 - TRP C11 H12 N2 O2 c1ccc2c(c1....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: TRP; Similar ligands found: 29
No: Ligand ECFP6 Tc MDL keys Tc
1 DTR 1 1
2 TRP 1 1
3 LTN 0.765957 0.777778
4 TR7 0.666667 0.833333
5 3IL 0.666667 0.75
6 4Z9 0.666667 0.75
7 FT6 0.561404 0.888889
8 IAC 0.538462 0.787879
9 TSR 0.529412 0.722222
10 IOP 0.518519 0.764706
11 R59 0.515152 0.72093
12 R38 0.515152 0.72093
13 3IB 0.491228 0.742857
14 ITW 0.491228 0.694444
15 IAD 0.484375 0.738095
16 TRP GLY 0.476923 0.704545
17 TSS 0.471698 0.666667
18 CTE 0.467742 0.888889
19 DTE 0.467742 0.888889
20 IAV 0.461538 0.738095
21 IAG 0.459016 0.738095
22 LYS TRP 0.432432 0.673913
23 78U 0.42623 0.794118
24 0ZN 0.421687 0.673913
25 4OG 0.416667 0.8
26 X95 0.411765 0.680851
27 LSW 0.411765 0.680851
28 ASP TRP ASN 0.405063 0.673913
29 GLU ASP ASN ASP TRP ASN 0.405063 0.673913
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2G36; Ligand: TRP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2g36.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2G36; Ligand: TRP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2g36.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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