Receptor
PDB id Resolution Class Description Source Keywords
2GFT 2.3 Å EC: 3.2.1.89 CRYSTAL STRUCTURE OF THE E263A NUCLEOPHILE MUTANT OF BACILLU LICHENIFORMIS ENDO-BETA-1,4-GALACTANASE IN COMPLEX WITH GAL BACILLUS LICHENIFORMIS BETA-ALPHA-8-BARREL PROTEIN-OLIGOSACCHARIDE COMPLEX NUCLEOINACTIVE MUTANT HYDROLASE
Ref.: OLIGOSACCHARIDE BINDING OF BACILLUS LICHENIFORMIS ENDO-BETA-1,4-GALACTANASE TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:901;
B:902;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
GAL GAL GAL C:1;
D:1;
Valid;
Valid;
none;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UR4 2.2 Å EC: 3.2.1.89 THE STRUCTURE OF ENDO-BETA-1,4-GALACTANASE FROM BACILLUS LIC IN COMPLEX WITH TWO OLIGOSACCHARIDE PRODUCTS. BACILLUS LICHENIFORMIS HYDROLASE BETA-1 4-GALACTANASE GLYCOSIDE HYDROLASE SUBSTSPECIFICITY PECTIN GH-A FAMILY 53 PLANT CELL WALL DEGRA
Ref.: THE STRUCTURE OF ENDO-BETA-1,4-GALACTANASE FROM BAC LICHENIFORMIS IN COMPLEX WITH TWO OLIGOSACCHARIDE P J.MOL.BIOL. V. 341 107 2004
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2GFT - GAL GAL GAL n/a n/a
2 1UR4 - GAL GAL n/a n/a
3 2CCR - GAL GAL GAL n/a n/a
4 1UR0 - GAL GAL GAL n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2GFT - GAL GAL GAL n/a n/a
2 1UR4 - GAL GAL n/a n/a
3 2CCR - GAL GAL GAL n/a n/a
4 1UR0 - GAL GAL GAL n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2GFT - GAL GAL GAL n/a n/a
2 1UR4 - GAL GAL n/a n/a
3 2CCR - GAL GAL GAL n/a n/a
4 1UR0 - GAL GAL GAL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GAL GAL GAL; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: GAL GAL GAL; Similar ligands found: 5
No: Ligand Similarity coefficient
1 GAL GAL GAL 1.0000
2 BGC BGC BGC 0.9033
3 GS1 GS1 BGC 0.8928
4 GLC GLC GLC 0.8638
5 BGC GLC GLC 0.8613
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UR4; Ligand: GAL GAL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1ur4.bio2) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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