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Receptor
PDB id Resolution Class Description Source Keywords
2GSD 1.95 Å EC: 1.2.1.43 NAD-DEPENDENT FORMATE DEHYDROGENASE FROM BACTERIUM MORAXELLA COMPLEX WITH NAD AND AZIDE MORAXELLA SP. OXIDOREDUCTASE (ALDEHYDE (D)NAD+(A)) OXIDOREDUCTASE
Ref.: STRUCTURES OF THE APO AND HOLO FORMS OF FORMATE DEHYDROGENASE FROM THE BACTERIUM MORAXELLA SP. C-1: UNDERSTANDING THE MECHANISM OF THE CLOSURE OF THE INTERDOMAIN CLEFT. ACTA CRYSTALLOGR.,SECT.D V. 65 1315 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AZI A:403;
Invalid;
none;
submit data
42.02 N3 [N-]=...
NAD A:402;
Valid;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2GSD 1.95 Å EC: 1.2.1.43 NAD-DEPENDENT FORMATE DEHYDROGENASE FROM BACTERIUM MORAXELLA COMPLEX WITH NAD AND AZIDE MORAXELLA SP. OXIDOREDUCTASE (ALDEHYDE (D)NAD+(A)) OXIDOREDUCTASE
Ref.: STRUCTURES OF THE APO AND HOLO FORMS OF FORMATE DEHYDROGENASE FROM THE BACTERIUM MORAXELLA SP. C-1: UNDERSTANDING THE MECHANISM OF THE CLOSURE OF THE INTERDOMAIN CLEFT. ACTA CRYSTALLOGR.,SECT.D V. 65 1315 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2GSD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4XYE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 4XYB - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
3 2GSD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 2NAD Ki = 0.1 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4XYE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 4XYB - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
3 5DN9 Kd = 92 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 2GSD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 2NAD Ki = 0.1 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAD; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NHD 0.821429 0.972222
3 NAP 0.811966 0.986111
4 NFD 0.791304 0.946667
5 NXX 0.765766 0.972603
6 DND 0.765766 0.972603
7 AMP NAD 0.74359 0.972222
8 ZID 0.737705 0.986111
9 NAQ 0.729508 0.934211
10 NAE 0.721311 0.959459
11 NA0 0.712 0.972603
12 TAP 0.704 0.921053
13 NDE 0.689922 0.972603
14 NAJ 0.683333 0.972222
15 NDC 0.679389 0.934211
16 NDO 0.674603 0.958904
17 N01 0.656 0.972222
18 CNA 0.642276 0.972603
19 NBP 0.621212 0.922078
20 8ID 0.609756 0.922078
21 A2D 0.576923 0.958333
22 ADP 0.575472 0.931507
23 NGD 0.574803 0.922078
24 BA3 0.566038 0.958333
25 M33 0.564815 0.918919
26 ADP PO3 0.563636 0.957747
27 B4P 0.560748 0.958333
28 AP5 0.560748 0.958333
29 AN2 0.555556 0.918919
30 AT4 0.555556 0.894737
31 GAP 0.553571 0.932432
32 OOB 0.551724 0.972222
33 CA0 0.550459 0.932432
34 9JJ 0.546053 0.898734
35 HEJ 0.545455 0.931507
36 ACP 0.545455 0.906667
37 ATP 0.545455 0.931507
38 DQV 0.544 0.972222
39 ADP ALF 0.54386 0.883117
40 ALF ADP 0.54386 0.883117
41 DAL AMP 0.543103 0.945205
42 APR 0.540541 0.931507
43 AQP 0.540541 0.931507
44 AR6 0.540541 0.931507
45 5FA 0.540541 0.931507
46 ADP VO4 0.53913 0.945205
47 VO4 ADP 0.53913 0.945205
48 AD9 0.535714 0.906667
49 SAP 0.535714 0.883117
50 AGS 0.535714 0.883117
51 WAQ 0.533333 0.896104
52 ABM 0.53271 0.905405
53 DLL 0.529412 0.972222
54 00A 0.529412 0.921053
55 ACQ 0.526316 0.906667
56 NJP 0.526316 0.959459
57 ANP 0.526316 0.906667
58 OAD 0.525 0.932432
59 ADX 0.522523 0.839506
60 5AL 0.521739 0.945205
61 A1R 0.521008 0.871795
62 9SN 0.520325 0.909091
63 A 0.518868 0.930556
64 AMP 0.518868 0.930556
65 50T 0.517857 0.893333
66 ATF 0.517241 0.894737
67 1ZZ 0.516393 0.851852
68 3OD 0.516393 0.932432
69 SON 0.513514 0.92
70 PRX 0.513274 0.881579
71 6YZ 0.512821 0.906667
72 SRP 0.512821 0.92
73 9X8 0.512397 0.883117
74 ADP BMA 0.512397 0.932432
75 3UK 0.512397 0.958904
76 MYR AMP 0.512195 0.851852
77 NAJ PZO 0.510949 0.909091
78 NMN 0.509434 0.875
79 A3R 0.508333 0.871795
80 B5V 0.508197 0.945946
81 AMP DBH 0.507937 0.906667
82 A22 0.504202 0.945205
83 ATP A A A 0.504 0.971831
84 B5M 0.504 0.933333
85 FA5 0.504 0.945946
86 8QN 0.5 0.945205
87 NAX 0.496183 0.886076
88 TYR AMP 0.496063 0.933333
89 PR8 0.495935 0.8625
90 AMO 0.495868 0.92
91 ADQ 0.495868 0.932432
92 4AD 0.495868 0.933333
93 PAJ 0.495868 0.873418
94 A12 0.495495 0.894737
95 AP2 0.495495 0.894737
96 AHZ 0.492308 0.851852
97 YAP 0.492063 0.933333
98 FYA 0.491935 0.918919
99 AHX 0.491803 0.884615
100 4UU 0.488372 0.933333
101 5SV 0.487603 0.8375
102 TAT 0.487179 0.894737
103 T99 0.487179 0.894737
104 APC 0.486957 0.894737
105 SRA 0.486239 0.881579
106 6V0 0.484848 0.909091
107 NAI 0.484848 0.921053
108 GTA 0.484615 0.898734
109 A A 0.483871 0.958333
110 LAD 0.483871 0.873418
111 AU1 0.482456 0.906667
112 F2R 0.481752 0.831325
113 OMR 0.481203 0.841463
114 TXE 0.481203 0.921053
115 AF3 ADP 3PG 0.481203 0.873418
116 LAQ 0.480916 0.851852
117 G3A 0.48062 0.909091
118 B5Y 0.480315 0.933333
119 NB8 0.48 0.884615
120 TXA 0.48 0.92
121 BIS 0.48 0.871795
122 ME8 0.48 0.851852
123 PTJ 0.48 0.884615
124 139 0.477941 0.886076
125 LPA AMP 0.477273 0.851852
126 AFH 0.476923 0.873418
127 AR6 AR6 0.476923 0.958333
128 G5P 0.476923 0.909091
129 ARG AMP 0.476923 0.841463
130 25L 0.47619 0.945205
131 NAJ PYZ 0.475524 0.864198
132 25A 0.47541 0.958333
133 9ZA 0.47541 0.896104
134 9ZD 0.47541 0.896104
135 DZD 0.47482 0.897436
136 TXD 0.473684 0.921053
137 4UV 0.472868 0.933333
138 TYM 0.470149 0.945946
139 RBY 0.470085 0.894737
140 ADV 0.470085 0.894737
141 4TA 0.467626 0.864198
142 48N 0.466165 0.884615
143 XAH 0.465116 0.851852
144 4UW 0.462687 0.897436
145 M24 0.461538 0.886076
146 80F 0.460993 0.853659
147 IOT 0.459854 0.821429
148 T5A 0.456522 0.853659
149 EAD 0.455782 0.886076
150 MAP 0.455285 0.883117
151 GA7 0.454545 0.894737
152 BT5 0.453901 0.821429
153 A4P 0.452555 0.833333
154 UP5 0.451852 0.933333
155 PAP 0.445378 0.917808
156 4TC 0.445255 0.909091
157 AP0 0.445255 0.884615
158 YLP 0.444444 0.831325
159 P1H 0.443709 0.864198
160 AOC 0.442478 0.810811
161 Z5A 0.439189 0.833333
162 LMS 0.4375 0.817073
163 2A5 0.436975 0.857143
164 A G 0.43662 0.921053
165 G A A A 0.43662 0.909091
166 COD 0.43662 0.802326
167 ADJ 0.435714 0.841463
168 YLB 0.434783 0.831325
169 YLC 0.434783 0.851852
170 U A G G 0.433566 0.921053
171 ATR 0.433333 0.90411
172 7MD 0.432836 0.851852
173 8X1 0.432 0.764045
174 G5A 0.429752 0.790698
175 PO4 PO4 A A A A PO4 0.429688 0.943662
176 TAD 0.42963 0.873418
177 5AS 0.42735 0.770115
178 BTX 0.426573 0.831325
179 YLA 0.425532 0.831325
180 DSZ 0.425197 0.790698
181 NCN 0.424779 0.805556
182 UPA 0.42446 0.921053
183 8PZ 0.424242 0.811765
184 VMS 0.424 0.8
185 54H 0.424 0.8
186 9K8 0.423077 0.744444
187 N0B 0.422819 0.853659
188 6AD 0.422764 0.85
189 AYB 0.422535 0.821429
190 7D3 0.422414 0.844156
191 YLY 0.421769 0.821429
192 TSB 0.420635 0.809524
193 ODP 0.41958 0.922078
194 AV2 0.419355 0.855263
195 FB0 0.419355 0.775281
196 A5A 0.419355 0.819277
197 NNR 0.419048 0.739726
198 A A A 0.418605 0.918919
199 U A 0.417808 0.946667
200 649 0.417266 0.775281
201 NMN AMP PO4 0.416667 0.933333
202 SSA 0.416 0.790698
203 P5A 0.415385 0.755556
204 LSS 0.414062 0.772727
205 A2R 0.412698 0.918919
206 52H 0.412698 0.790698
207 JB6 0.412214 0.896104
208 5N5 0.411215 0.783784
209 YSA 0.410448 0.811765
210 53H 0.409449 0.790698
211 5CA 0.409449 0.790698
212 ITT 0.408333 0.878378
213 7D4 0.408333 0.844156
214 NA7 0.407692 0.894737
215 LEU LMS 0.407692 0.784091
216 5CD 0.407407 0.794521
217 0WD 0.406897 0.909091
218 A3P 0.40678 0.930556
219 HFD 0.406504 0.883117
220 AVV 0.40625 0.860759
221 RAB 0.40566 0.808219
222 XYA 0.40566 0.808219
223 ADN 0.40566 0.808219
224 FDA 0.405063 0.823529
225 GSU 0.40458 0.790698
226 7MC 0.404255 0.831325
227 NSS 0.403101 0.811765
228 6FA 0.402516 0.853659
229 PPS 0.4 0.817073
230 NVA LMS 0.4 0.784091
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2GSD; Ligand: NAD; Similar sites found with APoc: 821
This union binding pocket(no: 1) in the query (biounit: 2gsd.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 1VQW FAD 0.995025
2 2GVC FAD 0.995025
3 2GV8 FAD 0.995025
4 1CDO NAD 1.06952
5 2GZ3 NAP 1.0929
6 1KEV NDP 1.1396
7 4Z0H NAD 1.1976
8 3SSO SAH 1.24378
9 5WZE PRO 1.24378
10 4MOP 2H5 1.24378
11 3CTY FAD 1.25392
12 4E13 NAD 1.41343
13 3TWO NDP 1.43678
14 5YU3 NAD 1.45349
15 5YU3 PRO 1.45349
16 1VKO NAD 1.49254
17 1UWK NAD 1.49254
18 1UWK URO 1.49254
19 4J36 1HR 1.49254
20 5GSN NAP 1.49254
21 5GSN FAD 1.49254
22 2D3N GLC GLC GLC 1.49254
23 4J36 FAD 1.49254
24 3WXL ADP 1.49254
25 5GSN MMZ 1.49254
26 2VVL FAD 1.49254
27 2VVM FAD 1.49254
28 1X87 NAD 1.49254
29 3A2Q ACA ACA 1.49254
30 5HV7 RBL 1.49254
31 2PZM NAD 1.51515
32 2PZM UDP 1.51515
33 2BKA NDP 1.65289
34 1LC3 NAD 1.70068
35 1YKF NAP 1.70455
36 1WPQ NAD 1.7192
37 2CDU ADP 1.74129
38 1MUU NAD 1.74129
39 2IXB NAD 1.74129
40 1VJT NAD 1.74129
41 1V8B NAD 1.74129
42 6C4M NAP 1.74129
43 2IXB A2G 1.74129
44 1MV8 NAD 1.74129
45 5OD2 GLC 1.74129
46 4X1B MLI 1.74129
47 5G3U ITW 1.74129
48 5G3U FDA 1.74129
49 5BVA FAD 1.74129
50 3AXB PRO 1.74129
51 2CDU FAD 1.74129
52 4QDF 30Q 1.77665
53 1Z82 NDP 1.79104
54 4NTC FAD 1.79104
55 4PLG NAI 1.79641
56 4PLG OXM 1.79641
57 6A0S HSE 1.80723
58 6A0S NDP 1.80723
59 3NGL NAP 1.81159
60 6BWL NAD 1.82927
61 1GZ6 NAI 1.88088
62 1GR0 NAD 1.90736
63 1OAA OAA 1.9305
64 5LD5 NAD 1.95531
65 1BXG NAD 1.96629
66 1BW9 NAD 1.96629
67 3RJ5 NAD 1.9685
68 1C1X NAD 1.97183
69 2IZ1 ATR 1.99005
70 3GD4 NAD 1.99005
71 1H82 GZZ 1.99005
72 1H82 FAD 1.99005
73 4UZI IMD 1.99005
74 1QMG APX 1.99005
75 4OOE FOM 1.99005
76 4OOE NDP 1.99005
77 6C4N NAP 1.99005
78 2RGJ FAD 1.99005
79 1O0S NAI 1.99005
80 5TUF FAD 1.99005
81 3FG2 FAD 1.99005
82 4BV6 FAD 1.99005
83 6C4T NA7 2
84 1X7D ORN 2
85 1X7D NAD 2
86 5W3K 9TY 2.05882
87 5W3K NDP 2.05882
88 5OCM NAP 2.06186
89 1WP4 NDP 2.07612
90 2C29 NAP 2.07715
91 3KLJ FAD 2.07792
92 4GKV NAD 2.08333
93 4MDH NAD 2.09581
94 5MDH NAD 2.1021
95 4KOA NDP 2.1021
96 4RVU NDP 2.10843
97 6GAS FAD 2.1148
98 6BQ6 TER 2.1148
99 2HJR APR 2.13415
100 1D1T NAD 2.14477
101 1TB4 PEJ 2.15633
102 5GWT NAD 2.15827
103 5GWT SIN 2.15827
104 4O0L NDP 2.18182
105 1EBF NAD 2.23464
106 1PJS NAD 2.23881
107 6A3J NAI 2.23881
108 3S5W FAD 2.23881
109 3S5W NAP 2.23881
110 3L9W GSH 2.23881
111 6A3J SOE 2.23881
112 4QS9 BGC 2.23881
113 3O8M GLC 2.23881
114 3O8M BGC 2.23881
115 4FWE FAD 2.23881
116 4OPC PGT 2.23881
117 4OPC FDA 2.23881
118 2JHP SAH 2.23881
119 5BUK FAD 2.23881
120 5JWC FAD 2.23881
121 3L9W AMP 2.23881
122 1IT7 GUN 2.23881
123 2NPX NAD 2.23881
124 4Z24 FAD 2.23881
125 5HSA FAS 2.23881
126 3ULK NDP 2.24033
127 5FI3 NAP 2.2409
128 2IMI GSH 2.26244
129 1HYH NAD 2.26537
130 5AYV NAP 2.26537
131 5AYV KPL 2.26537
132 1I36 NAP 2.27273
133 1OC2 TDX 2.29885
134 1OC2 NAD 2.29885
135 1O6Z NAD 2.31023
136 3OFK SAH 2.31481
137 6AA8 NAD 2.31788
138 4JJF FE9 2.32558
139 4JJF N2I 2.32558
140 1VI2 NAD 2.33333
141 4MP8 MLI 2.35988
142 4MP8 NAD 2.35988
143 4FN4 NAD 2.3622
144 5DOZ NDP 2.36686
145 1E3I CXF 2.39362
146 3A06 FOM 2.39362
147 3A06 NDP 2.39362
148 4RQU NAD 2.4
149 4PLT NAI 2.41692
150 4PLT OXM 2.41692
151 4URF NAD 2.41935
152 1NPD NAD 2.43056
153 3HB5 NAP 2.44648
154 1C3V NDP 2.44898
155 5BJX NAD 2.45902
156 5BJX UDP 2.45902
157 1RP0 AHZ 2.46479
158 3ABI NAD 2.46575
159 1T26 NAI 2.48447
160 1T26 GBD 2.48447
161 6F3N NAD 2.48756
162 6F3N ADN 2.48756
163 4XQC NAD 2.48756
164 1LVL NAD 2.48756
165 4XQC 13D 2.48756
166 5Y77 FAD 2.48756
167 3V1U NAD 2.48756
168 5OC1 FAD 2.48756
169 1Q0H NDP 2.48756
170 1Q0H FOM 2.48756
171 4EIP FAD 2.48756
172 3E1T FAD 2.48756
173 2G5C NAD 2.4911
174 3ZV6 NAD 2.4911
175 3ZV6 4HB 2.4911
176 1KEW NAD 2.49307
177 3CIF NAD 2.50696
178 3CIF G3H 2.50696
179 1K3T BRZ 2.50696
180 3OA2 NAD 2.51572
181 2ZB4 5OP 2.52101
182 2QRK AMP 2.53807
183 3H5N ATP 2.54958
184 2I3G NAP 2.55682
185 5X68 FAD 2.55754
186 4CNK FAD 2.55754
187 3GFB NAD 2.57143
188 4TSK NDP 2.57143
189 1L7E NAI 2.60417
190 1LK7 DER 2.62009
191 1IY8 NAD 2.62172
192 5C9P FUC 2.62467
193 1LLU NAD 2.63158
194 4JNA FAD 2.64706
195 4DCM SAM 2.66667
196 2FZW NAD 2.68097
197 1DSS NAD 2.7027
198 1HDG NAD 2.71084
199 1I2B UPG 2.72277
200 1I2B USQ 2.72277
201 1I2B NAD 2.72277
202 1LDM NAD 2.73556
203 5M67 NAD 2.73632
204 5M67 ADE 2.73632
205 5M67 3D1 2.73632
206 1RM0 D6P 2.73632
207 1GZ4 ATP 2.73632
208 1RM0 NAI 2.73632
209 4RF7 ARG 2.73632
210 1YY5 FAD 2.73632
211 1RSG FAD 2.73632
212 1BZL GCG 2.73632
213 5MBX SP5 2.73632
214 5MBX FAD 2.73632
215 1BZL FAD 2.73632
216 6HQD SRT 2.73632
217 4U8P UDP 2.73632
218 4U8P FDA 2.73632
219 4M52 FAD 2.73632
220 5VN0 FAD 2.73632
221 5VN0 NAI 2.73632
222 3SQP FAD 2.73632
223 4EMI NAD 2.73632
224 1O8B ABF 2.73973
225 5Z75 NAD 2.75229
226 5GZ6 NDP 2.76074
227 5GZ6 7C3 2.76074
228 3JYN NDP 2.76923
229 1GY8 NAD 2.77078
230 2XZ9 PYR 2.77778
231 3K7M FAD 2.78422
232 4DPL NAP 2.78552
233 1H2B NAJ 2.78552
234 1WVG APR 2.78552
235 1LUA NAP 2.78746
236 1ZQ9 SAM 2.80702
237 5A96 GTP 2.81124
238 1HDR NAD 2.86885
239 3H9E NAD 2.89017
240 5A1T NAI 2.93255
241 5A1T OXM 2.93255
242 4YT4 FE9 2.93333
243 5JE8 NAD 2.98013
244 3OJO NAD 2.98507
245 1OBB NAD 2.98507
246 5TOW ADN 2.98507
247 5TOW NAI 2.98507
248 5J5Z FAD 2.98507
249 5U8U FAD 2.98507
250 2IID FAD 2.98507
251 2IID PHE 2.98507
252 5MZI FAD 2.98507
253 5MZI FYK 2.98507
254 1U8X NAD 2.98507
255 1REO FAD 2.98507
256 1SQF SAM 2.98507
257 1D4D FAD 2.98507
258 1GPE FAD 2.98507
259 5TS5 FAD 2.98507
260 2CDC XYP 3.00546
261 2CDC XYS 3.00546
262 2CDC NAP 3.00546
263 1YQD NAP 3.00546
264 2Y6Q FAD 3.01508
265 2Y6Q I7T 3.01508
266 4YAC NAI 3.0303
267 1GAD NAD 3.0303
268 3AB1 FAD 3.05556
269 1NU4 MLA 3.09278
270 5K4W THR 3.11526
271 5K4W NAI 3.11526
272 3ICC NAP 3.13725
273 5G4L NDP 3.14685
274 3NYC IAR 3.14961
275 3NYC FAD 3.14961
276 2D2I NAP 3.15789
277 4O1M NAD 3.1746
278 3GGO NAI 3.18471
279 3GGO ENO 3.18471
280 5CAE SIN 3.19489
281 5CAE COA 3.19489
282 2YY7 NAD 3.20513
283 2YYY NAP 3.207
284 1U3U BNF 3.20856
285 1U3U NAD 3.20856
286 1ICV NIO 3.22581
287 5U5N NAD 3.22581
288 5FH7 5XL 3.22581
289 2NVK NAP 3.23383
290 1LJ8 NAD 3.23383
291 1UP7 NAD 3.23383
292 1M2W NAD 3.23383
293 2WPF FAD 3.23383
294 2WPF WPF 3.23383
295 5JCM FAD 3.23383
296 5JCM NAD 3.23383
297 5JCM ISD 3.23383
298 2NVK FAD 3.23383
299 2WIC GNP 3.23383
300 5A04 BGC 3.24484
301 5A04 NDP 3.24484
302 1UDB NAD 3.25444
303 1UDB UFG 3.25444
304 1RM4 NDP 3.2641
305 5TTJ FAD 3.26531
306 1XHC FAD 3.26975
307 1NFS DED 3.27869
308 3CMC NAD 3.29341
309 2VYN NAD 3.29341
310 1YKJ PHB 3.29949
311 1YKJ FAD 3.29949
312 1YJQ NAP 3.30033
313 2DM6 IMN 3.3033
314 2DM6 NAP 3.3033
315 9LDT NAD 3.31325
316 9LDB NAD 3.31325
317 5VKT NAP 3.31492
318 5MIT FAD 3.36391
319 5MIT NAP 3.36391
320 5JY6 NAD 3.37079
321 2GDZ NAD 3.37079
322 5NM7 GLY 3.38346
323 2JK0 ASP 3.38462
324 1RYI GOA 3.40314
325 1RYI FAD 3.40314
326 5O9F 9ON 3.40909
327 5O9F NAD 3.40909
328 4OSP NAP 3.42205
329 2EV9 SKM 3.42205
330 2EV9 NAP 3.42205
331 3H8V ATP 3.42466
332 2PK3 A2R 3.42679
333 2PT9 S4M 3.42679
334 1F06 NDP 3.4375
335 1F06 2NP 3.4375
336 1LTH NAD 3.44828
337 4R5M NAP 3.45745
338 4R5M 4NO 3.45745
339 1JJ7 ADP 3.46154
340 3P13 RIP 3.47222
341 1LDN NAD 3.48101
342 6F3M NAD 3.48259
343 5YB7 FAD 3.48259
344 5YB7 ORN 3.48259
345 4B63 NAP 3.48259
346 4B63 ORN 3.48259
347 4B63 FAD 3.48259
348 2WET FAD 3.48259
349 4EDF UPG 3.48259
350 2QA1 FAD 3.48259
351 1F8F NAD 3.50404
352 1P1C SAH 3.51759
353 5X20 NAD 3.52564
354 4NTD FAD 3.52941
355 3B20 NAD 3.53982
356 1GUZ NAD 3.54839
357 5NII FAD 3.55987
358 4Y9D NAI 3.60656
359 1BDB NAD 3.61011
360 1V6A TRE 3.61446
361 5V6F MAN BMA MAN 3.62319
362 1CER NAD 3.62538
363 4QED NAP 3.62903
364 1KYQ NAD 3.64964
365 3Q3C NAD 3.67893
366 1NYT NAP 3.69004
367 3WBZ ATP 3.69004
368 2Q7V FAD 3.69231
369 2VUT NAD 3.69318
370 5UR0 NAD 3.72493
371 1OMO NAD 3.72671
372 5D4V SAH 3.73134
373 1FWV SGA MAG FUC 3.73134
374 1Z45 NAD 3.73134
375 3G5S FAD 3.73134
376 1QO8 FAD 3.73134
377 3UOY FAD 3.73134
378 3UOY NAP 3.73134
379 1CZA GLC 3.73134
380 2JHF NAD 3.74332
381 1EZ4 NAD 3.77358
382 3B1F NAD 3.7931
383 2ZFZ ARG 3.79747
384 3QJ4 FAD 3.80117
385 4J7U NAP 3.81944
386 4J7U YTZ 3.81944
387 4YSX FAD 3.84615
388 1NFQ NAI 3.84615
389 2I7C AAT 3.88693
390 1EJ0 SAM 3.88889
391 3HAD NAD 3.8961
392 5KVS NAP 3.8961
393 3UWB BB2 3.8961
394 1Z6Z NAP 3.90071
395 2Q1W NAD 3.9039
396 1DIG NAP 3.92157
397 1DIG L37 3.92157
398 5YAP NAI 3.94737
399 5YAP 8S0 3.94737
400 2CVQ NDP 3.97554
401 1DLJ NAI 3.9801
402 1DLJ UGA 3.9801
403 5MSO NAP 3.9801
404 2YG3 FAD 3.9801
405 2AQJ FAD 3.9801
406 2AQJ TRP 3.9801
407 1XF1 CIT 3.9801
408 4D7E FAD 3.9801
409 5BSZ THM 4
410 2EWM NAD 4.01606
411 4W6Z 8ID 4.03458
412 4RF2 NAP 4.04412
413 3A4V PYR 4.10095
414 3A4V NAD 4.10095
415 5XG5 A2G 4.13793
416 1R6D DAU 4.1543
417 1R6D NAD 4.1543
418 4USQ FAD 4.15512
419 4B7X NAP 4.16667
420 5KKA 6V0 4.16667
421 3KO8 NAD 4.16667
422 3H4V NAP 4.16667
423 3H4V DVP 4.16667
424 4KWI 1TJ 4.18251
425 4IDC NDP 4.21687
426 4IDC 1XX 4.21687
427 3LZW FAD 4.21687
428 1J0X NAD 4.21687
429 3LZW NAP 4.21687
430 1BXK NAD 4.22535
431 1KOL NAD 4.22886
432 4A0S NAP 4.22886
433 1PN0 FAD 4.22886
434 4ISS TAR 4.22886
435 2XVE FAD 4.22886
436 1PN0 IPH 4.22886
437 4Y1B NAP 4.22886
438 2VHW NAI 4.24403
439 3ZNN FAD 4.32277
440 3ZNN 4WL 4.32277
441 2OKL BB2 4.32432
442 5ZZ6 NAD 4.32692
443 5ZZ6 ADP 4.32692
444 2RH4 EMO 4.33213
445 2B4R NAD 4.34783
446 2B4R AES 4.34783
447 4L8V NAP 4.45104
448 5EES NAP 4.45344
449 2JAH NDP 4.45344
450 2JAP NDP 4.45344
451 3AJ4 SEP 4.46429
452 3MA0 XYP 4.47284
453 2HK9 ATR 4.47761
454 5ZI2 ADP 4.47761
455 5ZI2 NAD 4.47761
456 3UCL NAP 4.47761
457 2HK9 NAP 4.47761
458 1MO9 KPC 4.47761
459 1MO9 FAD 4.47761
460 3UCL FAD 4.47761
461 3UCL CYH 4.47761
462 3AYI HCI 4.47761
463 3AYI FAD 4.47761
464 1O94 ADP 4.47761
465 1DJN ADP 4.47761
466 2GMH FAD 4.47761
467 1Q9I FAD 4.47761
468 1Q9I TEO 4.47761
469 1J0I GLC GLC GLC 4.47761
470 3O9Z AKG 4.48718
471 3O9Z NAD 4.48718
472 2CVZ NDP 4.49827
473 4ZVV GN0 4.51807
474 4ZVV NAD 4.51807
475 4HXY NDP 4.56621
476 4DID GDP 4.60526
477 1P31 EPU 4.63158
478 3ENV ABF 4.68085
479 1ZH8 NAP 4.70588
480 1SAY PYR 4.70914
481 4RL4 PPV 4.71698
482 3ORF NAD 4.72637
483 3ETG GLU 4.72637
484 3ETG GTP 4.72637
485 3ETG NDP 4.72637
486 5THQ NDP 4.77941
487 4XZ3 COA 4.78261
488 1G8S MET 4.78261
489 1YS4 NAP 4.80226
490 3QWI NAP 4.81482
491 3QWI CUE 4.81482
492 1OXV ANP 4.81586
493 4DMG SAM 4.83461
494 1ZBQ NAD 4.89297
495 6ER9 FAD 4.97512
496 6ER9 NAP 4.97512
497 5Z2L NDP 4.97512
498 3WLE NAD 4.98534
499 3WMX NAD 5.02793
500 3A28 NAD 5.03876
501 4NBW NAD 5.05837
502 3SJ7 NDP 5.15873
503 5T9E NAP 5.16605
504 2F9W PAU 5.16605
505 1Z0N BCD 5.20833
506 3FPZ AHZ 5.21472
507 1NVM NAD 5.21739
508 3K5I AIR 5.22388
509 1V59 NAD 5.22388
510 3OND NAD 5.22388
511 3OND ADN 5.22388
512 1FEC FAD 5.22388
513 4U7W NDP 5.22388
514 1V59 FAD 5.22388
515 5MQ6 NDP 5.22388
516 2YVF NAD 5.22388
517 2YVF FAD 5.22388
518 1E1M FAD 5.22388
519 1E1M NAP 5.22388
520 5BRT CH9 5.22388
521 5UAV NDP 5.2795
522 5UAV TFB 5.2795
523 4KGM ATP 5.30612
524 3DAG FEG 5.30726
525 5J60 FAD 5.3125
526 3V1Y NAD 5.34125
527 1U7T NAD 5.36398
528 5JBX MLI 5.36398
529 4LSJ LSJ 5.42636
530 1FK8 NAD 5.44747
531 2Q0L NAP 5.46624
532 3T31 DCQ 5.47264
533 3T31 FAD 5.47264
534 2RAB NAD 5.47264
535 2FR1 NDP 5.47264
536 3LAD FAD 5.47264
537 1ORR NAD 5.4755
538 5T9F NAP 5.53506
539 5T9F TYR 5.53506
540 3WBF NAP 5.57377
541 3WBF API 5.57377
542 1U1I NAD 5.61225
543 1P0F NAP 5.63003
544 1A5Z NAD 5.64263
545 4XB2 NDP 5.67164
546 4XB2 HSE 5.67164
547 3U4C NDP 5.69395
548 2ZJ1 ARJ 5.72139
549 2ZJ1 NAD 5.72139
550 4REP FAD 5.72139
551 2BD0 NAP 5.7377
552 2OOR NAD 5.74713
553 5Y8L HUI 5.76271
554 5Y8L NAD 5.76271
555 1B8U NAD 5.77508
556 1B8U OAA 5.77508
557 4JK3 NAD 5.79151
558 5YEC ATP 5.88235
559 2WSB NAD 5.90551
560 4XDY NAI 5.91716
561 5X9D 80F 5.92105
562 4JBI NDP 5.94595
563 4TM3 FAD 5.97015
564 1DFO FFO 5.97015
565 3RFV 15L 5.99251
566 3RFV NAI 5.99251
567 2CUL FAD 6.03448
568 1XG5 NAP 6.09319
569 1SOW NAD 6.09756
570 3QV1 NAD 6.09756
571 5KVA SAM 6.11511
572 1E3W NAD 6.13027
573 1E6W NAD 6.15385
574 4D79 ATP 6.15942
575 4J4H NAI 6.17761
576 4J4H 1J1 6.17761
577 4RDH AMP 6.21891
578 4RDI ATP 6.21891
579 1PS9 NAP 6.21891
580 1UA4 GLC 6.21891
581 1UA4 BGC 6.21891
582 5JCA FAD 6.21891
583 5JCA NDP 6.21891
584 1PS9 FAD 6.21891
585 3IHG FAD 6.21891
586 1F8G NAD 6.25
587 1SB8 NAD 6.25
588 1SB8 UD2 6.25
589 4BVA NDP 6.26866
590 4B4U NAP 6.27063
591 6CEP OXM 6.28743
592 6CEP NAD 6.28743
593 1W8D NAP 6.29139
594 1W6U NAP 6.29139
595 1W73 NAP 6.29139
596 1X0P FAD 6.29371
597 1J5P NAD 6.32411
598 4TXI FAD 6.34146
599 1M0S CIT 6.39269
600 1NM5 NAD 6.40394
601 3AD8 NAD 6.40394
602 2YVJ NAI 6.42202
603 2HIM ASP 6.42458
604 2B5W NAP 6.44258
605 3VPH NAD 6.45161
606 3VPH OXM 6.45161
607 4YCA NDP 6.46258
608 1DRV A3D 6.46766
609 2NU8 COA 6.59722
610 3JQ7 NAP 6.59722
611 2Q1S NAI 6.6313
612 2DT5 NAD 6.63507
613 2ZI8 SDT 6.66667
614 4ITU NAI 6.69145
615 5E4R NAP 6.71642
616 5DP2 NAP 6.72515
617 5Z2F NAP 6.79245
618 5O4J PJL 6.93431
619 5O4J SAH 6.93431
620 5O4J 9KH 6.93431
621 2HMT NAI 6.94444
622 5TC4 NAD 6.96203
623 2IVD FAD 6.96517
624 3AFN NAP 6.97674
625 5ODQ FAD 7.02341
626 3NJ4 NAD 7.12644
627 3NJ4 AFX 7.12644
628 4ZCC NAI 7.14286
629 4ZCC FAD 7.14286
630 5XVH NAP 7.18954
631 5OJL TXP 7.21393
632 1NVT NAP 7.31707
633 1AE1 NAP 7.32601
634 4Q9N NAI 7.38255
635 1SZO CAX 7.393
636 4GLL NAD 7.4184
637 1UXG FUM 7.44337
638 1UXG NAD 7.44337
639 1VM6 NAD 7.45614
640 5OVL NAP 7.46269
641 1N9G NAP 7.51295
642 1H5Q NAP 7.54717
643 2AG8 NAP 7.60456
644 1JA9 NDP 7.66423
645 1E5Q NDP 7.71144
646 4J1Q NDP 7.71144
647 1U1J MET 7.71144
648 5N2I NAP 7.75862
649 4OM8 NAD 7.76699
650 2BRY FAD 7.84708
651 4XDZ NDP 7.87172
652 3ICS ADP 7.9602
653 3ICT ADP 7.9602
654 4K5S FAD 7.9602
655 1WDK NAD 7.9602
656 4K5S PM0 7.9602
657 2E5V FAD 7.9602
658 4WAS NAP 7.96703
659 1C0I BE2 7.98898
660 1C0I FAD 7.98898
661 4R1S NAP 8.01187
662 1O5I NAD 8.03213
663 6AYI C3G 8.0402
664 3CH6 NAP 8.04196
665 3CH6 311 8.04196
666 1VBO MAN MAN MAN 8.05369
667 4D3F NAP 8.06452
668 3WGT FAD 8.06916
669 3WGT QSC 8.06916
670 1XSE NDP 8.13559
671 5TWB FAD 8.13953
672 2Z49 AMG 8.20895
673 5GT9 NAP 8.36502
674 1GV0 NAD 8.3871
675 3C1O NAP 8.41121
676 2GN4 UD1 8.43023
677 2GN4 NDP 8.43023
678 4PIV NDP 8.45771
679 4CJX NAP 8.46395
680 1LSS NAD 8.57143
681 4II2 ATP 8.58896
682 1GEG NAD 8.59375
683 1PR9 NAP 8.60656
684 3D3W NAP 8.60656
685 4K26 NDP 8.69565
686 2Z3Y F2N 8.70647
687 2FWP CIT 8.74317
688 1G0N PHH 8.83392
689 1G0N NDP 8.83392
690 3WQQ NDP 8.95522
691 3WQQ IB3 8.95522
692 4KP7 1UQ 8.95522
693 4KP7 NAP 8.95522
694 2BGM NAJ 8.99281
695 4YRY NAD 9.05797
696 1PZG A3D 9.06344
697 2DTX BMA 9.09091
698 1YB5 NAP 9.11681
699 1NV8 MEQ 9.15493
700 4NBT NAD 9.16667
701 3W6X HZP 9.17031
702 4YKG NAD 9.20398
703 4YKG FAD 9.20398
704 1R37 NAD 9.2219
705 2X6T NAP 9.2437
706 2A92 NAI 9.34579
707 2F5Z FAD 9.375
708 2DKN NAI 9.41177
709 1JAY NAP 9.43396
710 2R4J FAD 9.45274
711 2R4J 13P 9.45274
712 1X14 NAD 9.47631
713 1RKX NAD 9.52381
714 1VL0 NAI 9.58904
715 3LU1 NAD 9.61539
716 5NLM IOS 9.70149
717 5T2U NAP 9.70149
718 3NUG NAD 9.7166
719 2PV7 NAD 9.73154
720 4UP3 NDP 9.87261
721 3L4S NAD 10.119
722 3L4S 3PG 10.119
723 2VT3 ATP 10.2326
724 4ZRN UPG 10.2564
725 4ZRN NAD 10.2564
726 2Q46 NAP 10.2767
727 1P77 ATR 10.2941
728 2DFV NAD 10.3746
729 1PL6 NAD 10.3933
730 1PL6 572 10.3933
731 2JL1 NAP 10.453
732 5U5G NAP 10.5085
733 1EQ2 NAP 10.6452
734 6F9Q NAD 10.6618
735 5TUK FAD 10.6965
736 3TN7 NJP 10.8949
737 1EK6 NAI 10.9195
738 1EK6 UPG 10.9195
739 3WV8 ATP 11.0092
740 2XYQ SAH 11.0345
741 2ZB3 NDP 11.0482
742 5EIN NAP 11.1111
743 2GAG NAD 11.1111
744 4NBU NAI 11.2
745 1MXH NAP 11.2319
746 1MXH DHF 11.2319
747 1HYE NAP 11.5016
748 1KJ8 GAR 11.509
749 5OVK NDP 11.7188
750 5H81 NAP 12.3393
751 3JQA NAP 12.5
752 5JDI NAP 12.5
753 3BMO NAP 12.5
754 5JDC NAP 12.5
755 3JQ9 NAP 12.5
756 3JQG NAP 12.5
757 3BMQ NAP 12.5
758 4CME NAP 12.5
759 4CM8 NAP 12.5
760 4CM4 NAP 12.5
761 3JQF NAP 12.5
762 4CMI NAP 12.5
763 5JCJ NAP 12.5
764 3JQB NAP 12.5
765 4CLR NAP 12.5
766 5K6A NAP 12.5
767 4CM9 NAP 12.5
768 3JQ8 NAP 12.5
769 3BMN NAP 12.5
770 4CLO NAP 12.5
771 5IDB BMA 12.6761
772 2DC1 NAD 12.7119
773 4AP3 FAD 12.9353
774 4AP3 NAP 12.9353
775 1ZEM NAD 12.9771
776 3QWB NDP 13.1737
777 1GQ2 NAP 13.1841
778 1CF2 NAP 13.3531
779 4D04 NAP 13.4328
780 4D04 FAD 13.4328
781 2WD7 NAP 13.4328
782 2VZ0 NAP 13.4328
783 2VZ0 D64 13.4328
784 5BSH PRO 14.0794
785 6DNT NAD 14.5349
786 1UJ5 5RP 14.5374
787 2F1K NAP 14.6953
788 2XOC ADE 14.9425
789 1Y8Q ATP 15.0289
790 2ZAT NAP 16.1538
791 5WQP NAP 16.2393
792 4CQM NAP 16.4751
793 5NUF NAD 17.4699
794 1JNR FAD 18
795 5NUE NAD 18.3735
796 5L95 AMP 18.75
797 3B1J NAD 24
798 4GUT FAD 25.8065
799 4GUS FAD 25.8065
800 4HSU FAD 25.8065
801 2VOH CIT 26.9231
802 4WGF HX2 28.7805
803 2AHR NAP 29.3436
804 1EDO NAP 29.918
805 2O4C NAD 30.5263
806 2GCG NDP 32.4242
807 1SC6 NAD 32.5871
808 4ZGS NAD 33.4197
809 1J49 NAD 33.9339
810 3BAZ NAP 34.5345
811 5Z21 NAI 34.6369
812 6BII NAP 36.036
813 1HKU NAD 36.5922
814 5Z20 NAI 38.5507
815 5AOV NAP 41.369
816 3KB6 NAD 41.9162
817 4E5N NAD 42.1212
818 5OFW 9TW 42.6009
819 5N6C NAD 45
820 2DBZ NAP 45.2096
821 5N53 8NB 48.7179
Pocket No.: 2; Query (leader) PDB : 2GSD; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2gsd.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
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