-->
Receptor
PDB id Resolution Class Description Source Keywords
2J3L 2.3 Å EC: 6.1.1.15 PROLYL-TRNA SYNTHETASE FROM ENTEROCOCCUS FAECALIS COMPLEXED WITH A PROLYL-ADENYLATE ANALOGUE ('5'-O-(N-(L-PROLYL)- S ULFAMOYL)ADENOSINE) ENTEROCOCCUS FAECALIS BACTERIAL-TYPE PROLYL-TRNA SYNTHETASE CLASS II AMINOACYL- TSYNTHETASE EDITING TRANSLATION ATP + L-PROLINE + TRNA (PGIVES AMP + PPI + L-PROLYL-TRNA(PRO) LIGASE
Ref.: STRUCTURES OF TWO BACTERIAL PROLYL-TRNA SYNTHETASES AND WITHOUT A CIS-EDITING DOMAIN. STRUCTURE V. 14 1511 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
P5A A:1576;
B:1582;
Valid;
Valid;
none;
none;
submit data
443.435 C15 H21 N7 O7 S c1nc(...
SO4 A:1566;
A:1567;
A:1568;
A:1569;
A:1570;
A:1571;
A:1572;
A:1573;
A:1574;
A:1575;
B:1571;
B:1572;
B:1573;
B:1574;
B:1575;
B:1576;
B:1577;
B:1578;
B:1579;
B:1580;
B:1581;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2J3M 2.3 Å EC: 6.1.1.15 PROLYL-TRNA SYNTHETASE FROM ENTEROCOCCUS FAECALIS COMPLEXED WITH ATP, MANGANESE AND PROLINOL ENTEROCOCCUS FAECALIS BACTERIAL-TYPE PROLYL-TRNA SYNTHETASE CLASS II AMINOACYL- TRNA SYNTHETASE EDITING TRANSLATION ATP + L-PROLINE + TRNA (PRO) GIVES AMP + PPI + L-PROLYL-TRNA(PRO) LIGASE
Ref.: STRUCTURES OF TWO BACTERIAL PROLYL-TRNA SYNTHETASES WITH AND WITHOUT A CIS-EDITING DOMAIN. STRUCTURE V. 14 1511 2006
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 2J3L - P5A C15 H21 N7 O7 S c1nc(c2c(n....
2 2J3M - PRI C5 H9 N O C1C[C@H](N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: P5A; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 P5A 1 1
2 8X1 0.892857 0.94382
3 G5A 0.681319 0.954023
4 VMS 0.663158 0.877778
5 54H 0.663158 0.877778
6 A5A 0.659574 0.897727
7 SSA 0.652632 0.931818
8 52H 0.645833 0.868132
9 DSZ 0.642857 0.910112
10 NSS 0.642857 0.910112
11 53H 0.639175 0.868132
12 5CA 0.639175 0.931818
13 TSB 0.639175 0.88764
14 5AS 0.633333 0.910112
15 LSS 0.626263 0.89011
16 PR8 0.623762 0.853933
17 NVA LMS 0.62 0.901099
18 LEU LMS 0.613861 0.880435
19 KAA 0.607843 0.988506
20 GSU 0.607843 0.931818
21 LMS 0.602273 0.896552
22 8PZ 0.584906 0.910112
23 YSA 0.579439 0.910112
24 SON 0.574468 0.777778
25 4YB 0.558559 0.911111
26 WSA 0.552632 0.920455
27 A 0.549451 0.741573
28 AMP 0.549451 0.741573
29 8Q2 0.547826 0.880435
30 649 0.53913 0.955056
31 CA0 0.536082 0.747253
32 A2D 0.531915 0.744444
33 ABM 0.531915 0.725275
34 AT4 0.525773 0.758242
35 AOC 0.521277 0.666667
36 A12 0.520833 0.758242
37 AP2 0.520833 0.758242
38 BA3 0.520833 0.744444
39 ADX 0.520408 0.853933
40 AU1 0.520408 0.747253
41 5AL 0.519608 0.755556
42 B4P 0.515464 0.744444
43 AP5 0.515464 0.744444
44 ADP 0.515464 0.744444
45 SRA 0.510638 0.766667
46 AN2 0.510204 0.755556
47 GAP 0.509804 0.766667
48 SLU 0.508065 0.858696
49 M33 0.50505 0.736264
50 DAL AMP 0.5 0.736264
51 XYA 0.5 0.681818
52 HEJ 0.5 0.744444
53 5CD 0.5 0.651685
54 RAB 0.5 0.681818
55 ADN 0.5 0.681818
56 50T 0.5 0.717391
57 ATP 0.5 0.744444
58 ACP 0.5 0.747253
59 9ZA 0.495327 0.741935
60 9ZD 0.495327 0.741935
61 SRP 0.495238 0.797753
62 ANP 0.495146 0.747253
63 PRX 0.49505 0.747253
64 APR 0.49505 0.744444
65 AR6 0.49505 0.744444
66 AQP 0.49505 0.744444
67 APC 0.49505 0.758242
68 5FA 0.49505 0.744444
69 3DH 0.494624 0.648352
70 A3R 0.490741 0.820225
71 4AD 0.490741 0.769231
72 A1R 0.490741 0.820225
73 RBY 0.490196 0.758242
74 AGS 0.490196 0.769231
75 ADV 0.490196 0.758242
76 AD9 0.490196 0.728261
77 ADP PO3 0.490196 0.741573
78 SAP 0.490196 0.769231
79 5N5 0.488636 0.681818
80 NB8 0.486486 0.771739
81 TXA 0.486486 0.73913
82 DLL 0.486239 0.755556
83 AHX 0.486239 0.791209
84 ATF 0.485714 0.72043
85 5X8 0.485149 0.696629
86 A4D 0.483146 0.681818
87 3UK 0.481818 0.747253
88 8QN 0.481481 0.755556
89 OOB 0.481481 0.755556
90 TAT 0.480769 0.758242
91 ACQ 0.480769 0.747253
92 T99 0.480769 0.758242
93 DTA 0.478261 0.696629
94 AMO 0.477064 0.777778
95 PAJ 0.477064 0.726316
96 3OD 0.473214 0.747253
97 9K8 0.473214 0.73
98 MTA 0.473118 0.648352
99 00A 0.472727 0.723404
100 MAP 0.472222 0.731183
101 A22 0.472222 0.736264
102 ALF ADP 0.471698 0.694737
103 ADP ALF 0.471698 0.694737
104 A3N 0.469388 0.659341
105 OAD 0.468468 0.747253
106 25A 0.46789 0.744444
107 EP4 0.467391 0.634409
108 6YZ 0.46729 0.747253
109 ADP VO4 0.46729 0.736264
110 VO4 ADP 0.46729 0.736264
111 9SN 0.464912 0.715789
112 GJV 0.464646 0.706522
113 B5V 0.464286 0.73913
114 WAQ 0.464286 0.820225
115 LAD 0.464286 0.842697
116 6RE 0.463918 0.695652
117 ADQ 0.463636 0.747253
118 M2T 0.462366 0.638298
119 LAQ 0.462185 0.804348
120 FA5 0.46087 0.777778
121 B5Y 0.46087 0.731183
122 YAP 0.46087 0.769231
123 PTJ 0.460177 0.715789
124 ME8 0.460177 0.765957
125 BIS 0.460177 0.741935
126 1ZZ 0.460177 0.765957
127 LPA AMP 0.458333 0.784946
128 7MD 0.457627 0.844444
129 ARG AMP 0.457627 0.776596
130 XAH 0.456897 0.844444
131 MYR AMP 0.45614 0.747368
132 ADP BMA 0.455357 0.728261
133 9X8 0.455357 0.75
134 NXX 0.454545 0.73913
135 J7C 0.454545 0.703297
136 5SV 0.454545 0.752688
137 DND 0.454545 0.73913
138 NAX 0.454545 0.755319
139 YLY 0.453846 0.817204
140 TYR AMP 0.452991 0.75
141 AMP DBH 0.452991 0.691489
142 TXE 0.45082 0.76087
143 7C5 0.449153 0.670213
144 B5M 0.448276 0.731183
145 4UU 0.445378 0.731183
146 NEC 0.444444 0.644444
147 DSH 0.444444 0.761364
148 25L 0.443478 0.736264
149 SAH 0.443396 0.719101
150 4UW 0.442623 0.708333
151 6V0 0.442623 0.734043
152 SFG 0.442308 0.704545
153 TAD 0.441667 0.763441
154 4UV 0.440678 0.731183
155 OMR 0.439024 0.757895
156 ZAS 0.438776 0.681319
157 A A 0.438596 0.725275
158 G3A 0.436975 0.715789
159 139 0.436508 0.774194
160 S4M 0.435644 0.723404
161 7MC 0.435484 0.826087
162 FYA 0.434783 0.775281
163 JB6 0.434783 0.8
164 48N 0.434426 0.734043
165 YLP 0.434426 0.826087
166 SA8 0.433962 0.688172
167 G5P 0.433333 0.715789
168 A4P 0.432 0.717172
169 MAO 0.431373 0.734043
170 UP5 0.430894 0.731183
171 TXD 0.430894 0.76087
172 NAI 0.430894 0.723404
173 A3G 0.43 0.727273
174 SAI 0.429907 0.692308
175 DQV 0.429752 0.755556
176 GTA 0.429752 0.693878
177 IOT 0.428571 0.817204
178 3AM 0.428571 0.730337
179 AF3 ADP 3PG 0.427419 0.708333
180 TYM 0.427419 0.777778
181 S7M 0.427273 0.691489
182 SMM 0.427273 0.6875
183 AHZ 0.42623 0.71134
184 SAM 0.425926 0.691489
185 YLA 0.425197 0.826087
186 4TC 0.424 0.734043
187 UPA 0.424 0.741935
188 YLB 0.424 0.826087
189 YLC 0.424 0.824176
190 ATP A A A 0.423729 0.733333
191 A7D 0.423077 0.727273
192 BT5 0.423077 0.797872
193 EEM 0.422018 0.65625
194 CNA 0.421875 0.758242
195 EO7 0.421569 0.857143
196 AR6 AR6 0.421488 0.725275
197 A5D 0.420561 0.696629
198 MHZ 0.419048 0.734043
199 F2R 0.418605 0.787234
200 2AM 0.418367 0.722222
201 A3P 0.417476 0.741573
202 A2P 0.417476 0.730337
203 A6D 0.417391 0.666667
204 AMP NAD 0.415385 0.736264
205 NAD 0.415385 0.755556
206 T5A 0.414062 0.75
207 594 0.413534 0.875
208 0UM 0.412281 0.736264
209 5AD 0.411111 0.602273
210 AYB 0.410853 0.817204
211 SXZ 0.410256 0.709677
212 GA7 0.409836 0.73913
213 AFH 0.409836 0.726316
214 A3S 0.409524 0.715909
215 A3D 0.409091 0.747253
216 7D5 0.408163 0.714286
217 NAJ PZO 0.406015 0.715789
218 OVE 0.405941 0.736264
219 K15 0.405172 0.702128
220 BTX 0.40458 0.806452
221 COD 0.40458 0.819149
222 4TA 0.40458 0.739583
223 6C6 0.40367 0.797753
224 GEK 0.403509 0.733333
225 A3T 0.401869 0.685393
226 AP0 0.401575 0.697917
227 DZD 0.401515 0.782609
228 BS5 0.4 0.88172
229 V3L 0.4 0.744444
230 67D 0.4 0.89011
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2J3M; Ligand: ATP; Similar sites found with APoc: 171
This union binding pocket(no: 1) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 1VBH PEP 1.04895
2 4PQG NAG 1.36986
3 3BJU ATP 1.53551
4 2ZTG A5A 1.57343
5 5BSR AMP 1.66052
6 4L80 OXL 1.72414
7 5W75 SUC 1.78571
8 5YJS SAL 1.79487
9 1SDW IYT 1.91083
10 3VSV XYP 1.92308
11 1E1O LYS 1.98413
12 4L9I 8PR 1.98413
13 4MOB ADP 2.10843
14 2VL1 GLY GLY 2.1097
15 5G48 1FL 2.13904
16 3G2Y GF4 2.28137
17 5FWJ MMK 2.33546
18 1YQT ADP 2.41636
19 5H9Y BGC BGC BGC BGC 2.47748
20 3HXU A5A 2.49433
21 5V59 8X1 2.52632
22 1X54 4AD 2.53456
23 3T4L ZEA 2.59259
24 6E1Q CFA 2.62238
25 1P7T PYR 2.62238
26 4L9Z OXL 2.65487
27 3ACL 3F1 2.7027
28 2XGT NSS 2.75862
29 2CYB TYR 2.78638
30 1LSH PLD 2.82132
31 4YRI 4JH 2.85088
32 1M5W DXP 2.88066
33 2P7Q GG6 3.00752
34 5FUI APY 3.0303
35 3E9I XAH 3.0426
36 5KJW 53C 3.0445
37 4GID 0GH 3.09278
38 3UPY FOM 3.14607
39 4Y24 TD2 3.24675
40 12AS AMP 3.33333
41 5IVE 6E8 3.33333
42 4HIA FMN 3.40909
43 5JJU AMP 3.52941
44 4FE2 AIR 3.52941
45 4D79 ATP 3.62319
46 3LKF PC 3.67893
47 1HXD BTN 3.73832
48 5XQW 8EU 3.79147
49 1QH5 GSH 3.84615
50 1QH5 GBP 3.84615
51 2GK6 ADP 3.84615
52 1G51 AMO 4.02098
53 2HZQ STR 4.02299
54 5EJL C2E 4.03226
55 5VCM UDP 4.05728
56 3A16 PXO 4.28954
57 5F7U GLC GLC 4.37063
58 3QO8 SSA 4.53608
59 3CBC DBS 4.54545
60 4IAW LIZ 4.78723
61 1JQN DCO 4.8951
62 1YFS ALA 4.94624
63 2D6M LBT 5.03145
64 3WV6 GAL GLC 5.06757
65 3IES M24 5.08167
66 3QRC SCR 5.09554
67 6DZN AE3 5.16432
68 3QSB 743 5.19126
69 4YLZ LAT NAG GAL 5.22876
70 5KD6 6C7 5.2506
71 1B09 PC 5.33981
72 2G30 ALA ALA PHE 5.42636
73 4DS0 A2G GAL NAG FUC 5.52147
74 3NEM AMO 5.70776
75 3NEM ATP 5.70776
76 2ART LPA AMP 5.72519
77 2Z77 HE7 5.7554
78 5VM6 9EG 5.83942
79 4Z3E GAL NGA GLA BGC GAL 6.06061
80 4WOE ADP 6.11888
81 2YMZ LAT 6.15385
82 2Y6P CTP 6.41026
83 2Y91 98J 6.41509
84 1N9L FMN 6.42202
85 5LHT TIH 6.46258
86 5DG2 GAL GLC 6.66667
87 3OV6 MK0 6.80101
88 3K8D CTP 6.81818
89 3A5Y KAA 6.95652
90 1QKQ MAN 7.04225
91 6F5W KG1 7.04607
92 4BQO COA 7.05128
93 3HP8 SUC 7.27273
94 2AG4 LP3 7.31707
95 2AG4 OLA 7.31707
96 5LXT GTP 7.31707
97 3G1Z AMP 7.36196
98 2VDF OCT 7.50988
99 2PR5 FMN 7.57576
100 3NZ1 3NY 7.66284
101 2CJA ATP 7.85441
102 3WG3 A2G GAL NAG FUC 7.86517
103 2QHS OCA 8.01688
104 5C9P FUC 8.13648
105 4RLT FSE 8.16327
106 5NM7 GLY 8.27068
107 2QV7 ADP 8.30861
108 5TCI MLI 8.33333
109 2BVE PH5 8.40336
110 2CJ9 SSA 8.42912
111 2Z3U CRR 8.94118
112 2QHV OC9 9.04762
113 5U98 1KX 9.09091
114 3G08 FEE 9.12281
115 1WAP TRP 9.33333
116 3GD8 GOL 9.41704
117 4ZTD ALA GLY ALA GLY ALA 9.48617
118 4H2X G5A 9.53757
119 3MF2 AMP 9.53757
120 4H2W AMP 9.53757
121 4H2W 5GP 9.53757
122 3H0L ADP 9.62343
123 4RF7 ARG 9.96504
124 1SES AHX 9.97625
125 1SES AMP 9.97625
126 4XTX 590 10
127 2HIM ASP 10.0559
128 2HIM ASN 10.0559
129 6GVZ CHO 10.1639
130 1DZK PRZ 10.1911
131 5SVV FMN 10.219
132 5WL1 D3D 10.3333
133 5WL1 CUY 10.3333
134 3ERR AMP 10.6343
135 2YKL NLD 10.6481
136 4RHS SIA SIA GAL 10.6557
137 6GNO XDI 11.1111
138 1B7Y FYA 11.1429
139 6AC9 ANP 11.3514
140 5VAD 91Y 11.4341
141 5VAD PRO 11.4341
142 2ZQO NGA 11.5385
143 3REU ATP 11.5646
144 2Q1A 2KT 11.6041
145 3A5Z KAA 12.0419
146 2J5B TYE 12.069
147 5F6U 5VK 12.1019
148 5HWV MBN 12.3077
149 3EFS BTN 12.4464
150 2HJ4 PNZ 12.4654
151 2QL9 CIT 12.7168
152 3IWD M2T 12.9032
153 1WLE SRP 13.3733
154 2JK0 ASP 13.5385
155 3UH0 TSB 13.913
156 1Y7P RIP 14.7982
157 4HWT 1B2 15.2542
158 5ML3 DL3 15.4362
159 5XIO ANP 15.6627
160 5XIO HFG 15.6627
161 4HWS 1B3 17.0316
162 3HCH RSM 17.8082
163 1I7M CG 17.9104
164 3LQV ADE 17.9487
165 4H2V AMP 18.1818
166 2Z6C FMN 20.155
167 4CS4 ANP 20.438
168 4CS4 AXZ 20.438
169 4RYV ZEA 21.9355
170 6FOF LAT 27.551
171 5H9P TD2 34.8101
Pocket No.: 2; Query (leader) PDB : 2J3M; Ligand: PRI; Similar sites found with APoc: 201
This union binding pocket(no: 2) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 1VBH PEP 1.04895
2 3BJU ATP 1.53551
3 3VYK MMA MAN NAG MAN NAG NAG 1.55039
4 2ZTG A5A 1.57343
5 4WCX MET 1.66667
6 4L80 OXL 1.72414
7 5GLT BGC GAL NAG GAL 1.76056
8 5W75 SUC 1.78571
9 5YJS SAL 1.79487
10 5VKM GAL SIA 1.85185
11 1SDW IYT 1.91083
12 3VSV XYP 1.92308
13 1E1O LYS 1.98413
14 4L9I 8PR 1.98413
15 4MOB ADP 2.10843
16 2VL1 GLY GLY 2.1097
17 5G48 1FL 2.13904
18 3G2Y GF4 2.28137
19 5FWJ MMK 2.33546
20 1YQT ADP 2.41636
21 4Z87 GDP 2.47619
22 3HXU A5A 2.49433
23 5V59 8X1 2.52632
24 1X54 4AD 2.53456
25 3T4L ZEA 2.59259
26 6E1Q CFA 2.62238
27 1P7T PYR 2.62238
28 4L9Z OXL 2.65487
29 4UZI IMD 2.69058
30 3ACL 3F1 2.7027
31 2XGT NSS 2.75862
32 2CYB TYR 2.78638
33 1LSH PLD 2.82132
34 4YRI 4JH 2.85088
35 4GCZ FMN 2.85714
36 1M5W DXP 2.88066
37 2P7Q GG6 3.00752
38 5FUI APY 3.0303
39 3E9I XAH 3.0426
40 5KJW 53C 3.0445
41 5N0L ILE 3.14465
42 3UPY FOM 3.14607
43 4Y24 TD2 3.24675
44 12AS AMP 3.33333
45 2XZ9 PYR 3.39506
46 4HIA FMN 3.40909
47 5JJU AMP 3.52941
48 4FE2 AIR 3.52941
49 3GLC R5P 3.72881
50 1HXD BTN 3.73832
51 1QH5 GSH 3.84615
52 2GK6 ADP 3.84615
53 5MZN ADP 3.84615
54 5T7I LAT NAG GAL 3.87097
55 1G51 AMO 4.02098
56 4QAC KK3 4.02098
57 5VCM UDP 4.05728
58 5N5U 7N8 4.14013
59 5L2R MLA 4.1958
60 3HQP OXL 4.20842
61 5TZO 7V7 4.25532
62 3A16 PXO 4.28954
63 5F7U GLC GLC 4.37063
64 3E85 BSU 4.43038
65 3QO8 SSA 4.53608
66 3CBC DBS 4.54545
67 4WUJ FMN 4.7619
68 4IAW LIZ 4.78723
69 1JQN DCO 4.8951
70 1F9V ADP 4.89914
71 6F1J EDG 4.92308
72 1YFS ALA 4.94624
73 4D1J DGJ 5
74 2D6M LBT 5.03145
75 5NLD LBT 5.03597
76 3WV6 GAL BGC 5.06757
77 3WV6 GAL GLC 5.06757
78 3IES M24 5.08167
79 3QRC SCR 5.09554
80 2WKQ FMN 5.12048
81 3QSB 743 5.19126
82 4YLZ LAT NAG GAL 5.22876
83 1B09 PC 5.33981
84 1UYY BGC BGC 5.34351
85 2W5P CL8 5.36913
86 2G30 ALA ALA PHE 5.42636
87 4DS0 A2G GAL NAG FUC 5.52147
88 1KC7 PPR 5.59441
89 3CH8 PRO GLN PRO VAL ASP SER TRP VAL 5.64103
90 3NEM AMO 5.70776
91 3NEM ATP 5.70776
92 4R38 RBF 5.71429
93 2ART LPA AMP 5.72519
94 5VM6 9EG 5.83942
95 4Z3E GAL NGA GLA BGC GAL 6.06061
96 1B0U ATP 6.10687
97 4WOE ADP 6.11888
98 2YMZ LAT 6.15385
99 2Y91 98J 6.41509
100 1N9L FMN 6.42202
101 5LHT TIH 6.46258
102 5DG2 GAL GLC 6.66667
103 3OV6 MK0 6.80101
104 3K8D CTP 6.81818
105 1OFL NGK GCD 6.86071
106 3A5Y KAA 6.95652
107 5FPE 3TR 6.97674
108 1QKQ MAN 7.04225
109 2AG4 OLA 7.31707
110 2AG4 LP3 7.31707
111 3G1Z AMP 7.36196
112 2VDF OCT 7.50988
113 2PR5 FMN 7.57576
114 3NZ1 3NY 7.66284
115 6GW4 CHO 7.81759
116 2CJA ATP 7.85441
117 2QHS OCA 8.01688
118 3SAO DBH 8.125
119 5C9P FUC 8.13648
120 2QPU QPU 8.14815
121 2QPU QPS 8.14815
122 5NM7 GLY 8.27068
123 2QV7 ADP 8.30861
124 5TCI MLI 8.33333
125 2BVE PH5 8.40336
126 2CJ9 SSA 8.42912
127 5OCG 9R5 8.46561
128 5WS9 OXL 8.63158
129 2Z3U CRR 8.94118
130 2QHV OC9 9.04762
131 5U98 1KX 9.09091
132 3G08 FEE 9.12281
133 6FA4 D1W 9.24856
134 3GD8 GOL 9.41704
135 3MF2 AMP 9.53757
136 4H2X G5A 9.53757
137 4H2W AMP 9.53757
138 4H2W 5GP 9.53757
139 3JQ3 ADP 9.56284
140 3H0L ADP 9.62343
141 2XOM GAL GAL GAL 9.86842
142 4RF7 ARG 9.96504
143 1SES AHX 9.97625
144 1SES AMP 9.97625
145 4XTX 590 10
146 2HIM ASN 10.0559
147 2HIM ASP 10.0559
148 6GVZ CHO 10.1639
149 1DZK PRZ 10.1911
150 5SVV FMN 10.219
151 5WL1 D3D 10.3333
152 5WL1 CUY 10.3333
153 3ERR AMP 10.6343
154 2YKL NLD 10.6481
155 4RHS SIA SIA GAL 10.6557
156 3ZZQ TRP 10.7692
157 6GNO XDI 11.1111
158 1B7Y FYA 11.1429
159 5VAD 91Y 11.4341
160 5VAD PRO 11.4341
161 3REU ATP 11.5646
162 2V0U FMN 11.6438
163 5EFW FMN 11.7241
164 3RZ3 U94 12.0219
165 3A5Z KAA 12.0419
166 2J5B TYE 12.069
167 1MID LAP 12.0879
168 5F6U 5VK 12.1019
169 3ZZS TRP 12.3077
170 5HWV MBN 12.3077
171 4NG2 OHN 12.3894
172 3EFS BTN 12.4464
173 2QL9 CIT 12.7168
174 3IWD M2T 12.9032
175 1WLE SRP 13.3733
176 4LZB URA 13.4454
177 2JK0 ASP 13.5385
178 6GBV FMN 13.6986
179 5DKK FMN 13.7931
180 3UH0 TSB 13.913
181 5VNF VAL THR SER VAL VAL 14.0127
182 4EES FMN 14.7826
183 4HWT 1B2 15.2542
184 2GGX NPJ 15.625
185 5XIO ANP 15.6627
186 5XIO HFG 15.6627
187 2GTF P1R 16.1111
188 4HWS 1B3 17.0316
189 3HCH RSM 17.8082
190 1I7M CG 17.9104
191 3LQV ADE 17.9487
192 4H2V AMP 18.1818
193 2QX0 PH2 19.4969
194 2Z6C FMN 20.155
195 4CS4 ANP 20.438
196 4CS4 AXZ 20.438
197 4RYV ZEA 21.9355
198 6FOF LAT 27.551
199 2Z6D FMN 29.2308
200 5NFB 8VT 31.25
201 5H9P TD2 34.8101
Pocket No.: 3; Query (leader) PDB : 2J3M; Ligand: PRI; Similar sites found with APoc: 33
This union binding pocket(no: 3) in the query (biounit: 2j3m.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 5A3T MMK 1.4553
2 5BSR AMP 1.66052
3 5H9Y BGC BGC BGC BGC 2.47748
4 5LUN OGA 2.84091
5 4GID 0GH 3.09278
6 5IVE 6E8 3.33333
7 3TW1 AHN 3.37553
8 4D79 ATP 3.62319
9 5D9G GLU ASN LEU TYR PHE GLN 3.65854
10 4Z24 FAD 3.67133
11 3LKF PC 3.67893
12 1Q11 TYE 3.76344
13 1QH5 GBP 3.84615
14 1KGI T4A 3.93701
15 2HZQ STR 4.02299
16 6DZN AE3 5.16432
17 3B8I OXL 5.22648
18 2F9W PAU 5.53506
19 2Y6P CTP 6.41026
20 5LIA 6XN 6.46853
21 2JLD AG1 6.66667
22 3HP8 SUC 7.27273
23 5LXT GTP 7.31707
24 3WG3 A2G GAL NAG FUC 7.86517
25 1F5F DHT 9.26829
26 1WAP TRP 9.33333
27 4ZTD ALA GLY ALA GLY ALA 9.48617
28 4XCB AKG 9.57854
29 1TT8 PHB 10.9756
30 2Q1A 2KT 11.6041
31 2HJ4 PNZ 12.4654
32 1Y7P RIP 14.7982
33 5ML3 DL3 15.4362
Pocket No.: 4; Query (leader) PDB : 2J3M; Ligand: ATP; Similar sites found with APoc: 45
This union binding pocket(no: 4) in the query (biounit: 2j3m.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 3VYK MMA MAN NAG MAN NAG NAG 1.55039
2 1H5S TMP 1.70648
3 5GLT BGC GAL NAG GAL 1.76056
4 4UBS DIF 1.78117
5 5VKM GAL SIA 1.85185
6 4CNK MEU 2.55754
7 4UZI IMD 2.69058
8 4GCZ FMN 2.85714
9 3TW1 AHN 3.37553
10 2XZ9 PYR 3.39506
11 3GLC R5P 3.72881
12 5MZN ADP 3.84615
13 5T7I LAT NAG GAL 3.87097
14 2RHQ GAX 4.08163
15 5L2R MLA 4.1958
16 3HQP OXL 4.20842
17 5H9Q TD2 4.51613
18 4WUJ FMN 4.7619
19 4D1J DGJ 5
20 5NLD LBT 5.03597
21 3WV6 GAL BGC 5.06757
22 2WKQ FMN 5.12048
23 4R38 RBF 5.71429
24 6GW4 CHO 7.81759
25 3SAO DBH 8.125
26 5WS9 OXL 8.63158
27 6FA4 D1W 9.24856
28 3JQ3 ADP 9.56284
29 3ZZQ TRP 10.7692
30 3NV3 GAL NAG MAN 10.8696
31 2V0U FMN 11.6438
32 5EFW FMN 11.7241
33 1MID LAP 12.0879
34 3ZZS TRP 12.3077
35 4NG2 OHN 12.3894
36 2BS5 BGC GAL FUC 13.3333
37 4LZB URA 13.4454
38 6GBV FMN 13.6986
39 5DKK FMN 13.7931
40 5VNF VAL THR SER VAL VAL 14.0127
41 4EES FMN 14.7826
42 2GTF P1R 16.1111
43 1A78 TDG 21.6418
44 4K55 H6P 24.1935
45 2Z6D FMN 29.2308
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